ID:

dsi_25085

Coordinate:

3r:10485467-10485674 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-28.8	-28.4	-28.4

Flybase annnotation

five_prime_UTR [3r_10485711_10485791_+]; exon [3r_10485711_10485952_+]; Antisense to five_prime_UTR [3r_10485397_10485436_-]; Antisense to exon [3r_10484526_10485436_-]

No Repeatable elements found

Sense Strand Reads

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------############## GATTCAACTTTAAAAACAAAACGAGCGTGTTTATCACGTTTTTAGAGATGGCAAGTGTAGCCAACAGGTCGCACTATCGGCAAAACTATTGGCAACTATATTGAAGAGGGAAAAACTGAAAACTACCTTTATAACTAATTACTTTAAAAAAATATATGAATTAAAGCAAATATTCTAATGTGCTTAAAAGGAAAATATCTGAAATTTATTTAGCTTTATGTTCCTTAAATTCATTATTAATCTATTATACAACACTAGGAATTATTTGCACACGCGTTCGATCGATACTGTCATCTATAACACAGTTG ************************************************...(((((.(((((.((((((......))))....)).)))))...........(((((................)))))....................((((.(((((((.(((((.((......)).)))))..((((((.(((.(((((.....)))))...))).)))))).))))))))))).............)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs
....................................................................................................TTGAAGAGGGAAAAA.................................................................................................................................................................................................	15	0	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................CACACGCGTTCGATCGATACTG..................	22	0	1	1.00	1	1	0	0	0	0
..........................................................................................................................................................................TATTCTAAGGCGCTTGAAAG......................................................................................................................	20	3	6	0.17	1	0	0	0	1	0
....................................................................................................................................................................................TGCTTAAAAGGAAAAAA...............................................................................................................	17	1	9	0.11	1	0	0	1	0	0
...................................................................................................ATTGAAAAGGGACAAACGGAAA...........................................................................................................................................................................................	22	3	10	0.10	1	0	0	0	0	1
.................................................................................................ATATTGAAGACGGAA....................................................................................................................................................................................................	15	1	17	0.06	1	0	0	1	0	0
.........................................TTAGATATGGCAAGTGA..........................................................................................................................................................................................................................................................	17	2	20	0.05	1	0	0	1	0	0

Anti-sense strand reads

####################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CTAAGTTGAAATTTTTGTTTTGCTCGCACAAATAGTGCAAAAATCTCTACCGTTCACATCGGTTGTCCAGCGTGATAGCCGTTTTGATAACCGTTGATATAACTTCTCCCTTTTTGACTTTTGATGGAAATATTGATTAATGAAATTTTTTTATATACTTAATTTCGTTTATAAGATTACACGAATTTTCCTTTTATAGACTTTAAATAAATCGAAATACAAGGAATTTAAGTAATAATTAGATAATATGTTGTGATCCTTAATAAACGTGTGCGCAAGCTAGCTATGACAGTAGATATTGTGTCAAC ************************************************...(((((.(((((.((((((......))))....)).)))))...........(((((................)))))....................((((.(((((((.(((((.((......)).)))))..((((((.(((.(((((.....)))))...))).)))))).))))))))))).............)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR902008 ovaries	M023 head	SRR553487 NRT_0-2 hours eggs
..........ATTTTTGTTTTGCTCGCA........................................................................................................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0
......................................AAAAATCTATACCGTTCAC...........................................................................................................................................................................................................................................................	19	1	2	0.50	1	0	0	1	0	0	0	0
...................................................................................................TATCTTCTCTCTTTTTGACT.............................................................................................................................................................................................	20	2	2	0.50	1	0	1	0	0	0	0	0
..................................................................................................ATATCCTCTCTCTTTTTGACT.............................................................................................................................................................................................	21	3	5	0.40	2	0	1	0	0	1	0	0
....................................................................................................................................TTGAGTAATGAAAGTTTTTTA...........................................................................................................................................................	21	2	4	0.25	1	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................ACAAGGAAGTTAAGTAAG........................................................................	18	2	19	0.05	1	0	0	0	0	0	1	0
....................................GCAGAAATATCTACCGATC.............................................................................................................................................................................................................................................................	19	3	19	0.05	1	0	0	0	0	0	1	0
................................................................................................................................................................................TGACACGAATTTCCCTTT..................................................................................................................	18	2	20	0.05	1	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................TGATAGTAGATGTTGTTTC...	19	3	20	0.05	1	0	0	0	0	0	0	1

Generated: 04/24/2015 at 10:43 AM