ID:

dsi_25070

 Coordinate:

3r:17708461-17708610 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.8 -34.7 -34.6

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
XDMRUnknownUnknown-

Sense Strand Reads

AAGCGAAAGCTGCGAAATATCGATGTATGTTTCGAACTATCGATTTTGAGGTTAGCATGAGTAATCGATACATTGGTGGGTAACTCTGCTAGAGCGGGGCCATTTCACGAGTGCCTGGTGTACTCGCTAGCAATATCAGAACATTGTGGCAACTCCACTACTTGCGCGGGCAATTCAAATTCAAACCAATACTAAACACACCTTTCACTTTTAAACGGATTTTGTAAAATTAATTTTTGGCCAAATTTCC
**************************************************((((((..(((((((((...((((.(((((...((((((....))))))....))))).))))..)))).)))))))))))..............((((.....))))...((((....))))...........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
.........................................................................................................................................AGAACATTGTGGCAACTC............................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0
..............................................................................................CGGGGCCCTTTCACG............................................................................................................................................. 15 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................CTGGTGTAGTCGCTAGC....................................................................................................................... 17 1 1 1.00 1 0 0 1 0 0 0 0
..................................................................................................................................................................................................................TTAAACGGATTTTGTAAAATTAATT............... 25 0 14 0.57 8 2 5 0 0 0 1 0
...................................................................................................................................................................................................................TAAACGGATTTTGTAAAATTAATTTT............. 26 0 13 0.38 5 0 3 0 0 0 2 0
...................................................................................................................................................................................................................TAAACGGATTTTGTAAAATTAATTTTT............ 27 0 12 0.33 4 1 0 0 0 1 2 0
...................................................................ATCCATTGGTGGGCAAGTCTG.................................................................................................................................................................. 21 3 5 0.20 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................AAACGGATTTTGTAAAATTAATTTTT............ 26 0 12 0.17 2 0 2 0 0 0 0 0
...........................................................................................................................................................................AATTCAAATTCAGACCTAAACT......................................................... 22 3 6 0.17 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................TTTAAACGGATTTTGTAAAATTAATT............... 26 0 14 0.14 2 0 2 0 0 0 0 0
...................................................................................................................................................................................................................TAAACGGATTTTGTAAAATTAATT............... 24 0 14 0.14 2 0 2 0 0 0 0 0
........................................................................................................................................................................................................................GGATTTTGTAAAATTAATTTTTGGC......... 25 0 8 0.13 1 0 1 0 0 0 0 0
............................................................................................................................................................................................................TCACTTTGAAACGGATTTTGTAAAATT................... 27 1 10 0.10 1 0 0 0 0 1 0 0
.................................................................................................................................................GTTGCAACTCCTCTACTTGA..................................................................................... 20 3 10 0.10 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................TTTCACTTTTAAACGGATTTTGTAAA...................... 26 0 11 0.09 1 0 0 0 0 0 0 1
........................................................................................................................................................................................................................GGATTTTGTAAAATTAATTTTTGGCGA....... 27 1 11 0.09 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................................CTTTCACTTTTAAACGGATTTTGTAAAA..................... 28 0 11 0.09 1 0 1 0 0 0 0 0
..........................................................................................................................................................................................................TTTCACTTTTAAACGGATTTTGTA........................ 24 0 11 0.09 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................TTAAACGGATTTTGTAAAATTAATTTT............. 27 0 13 0.08 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................................AAACGGATTTTGTAAAATTAATTTT............. 25 0 13 0.08 1 0 1 0 0 0 0 0
.....................................................................................................................GTGAACTCGCTAGCGAT.................................................................................................................... 17 2 13 0.08 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................................TAAACGGATTTTGTAAAATGAATTTT............. 26 1 14 0.07 1 0 1 0 0 0 0 0
...................................................................................................................................................................................................................TAAACGGATTTTGTAAAATTAATTT.............. 25 0 14 0.07 1 0 1 0 0 0 0 0
...............................................................................TTAACTCTTCTGGAGCGGG........................................................................................................................................................ 19 3 14 0.07 1 0 0 1 0 0 0 0
................................................................................................................................................................................................................TTTGAAACGGATTTTGTAAAATTAATT............... 27 1 14 0.07 1 0 0 0 0 1 0 0
................................................................................................................................................................................................................TTTTAAACGGATTTTGTAAAATT................... 23 0 15 0.07 1 0 0 0 0 1 0 0
..................................................................................................................................................................................................................TTCAACGGATTTAGTAAAATTATT................ 24 3 17 0.06 1 0 0 0 0 1 0 0
......................................................................................TGCTAGAACAGGTCCATTT................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTTTGTAAAATTAATTTTTGGCC........ 23 0 20 0.05 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................................GGATTTTGGAAAATTAATTTTTGGC......... 25 1 20 0.05 1 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................GATTTTGTAAAATTAATTTTTGGC......... 24 0 20 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

TTCGCTTTCGACGCTTTATAGCTACATACAAAGCTTGATAGCTAAAACTCCAATCGTACTCATTAGCTATGTAACCACCCATTGAGACGATCTCGCCCCGGTAAAGTGCTCACGGACCACATGAGCGATCGTTATAGTCTTGTAACACCGTTGAGGTGATGAACGCGCCCGTTAAGTTTAAGTTTGGTTATGATTTGTGTGGAAAGTGAAAATTTGCCTAAAACATTTTAATTAAAAACCGGTTTAAAGG
**************************************************((((((..(((((((((...((((.(((((...((((((....))))))....))))).))))..)))).)))))))))))..............((((.....))))...((((....))))...........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR902008
ovaries
 M024
male body		 M053
female body
..........................................................................................................................GAGCGATCGTTATAGTCT.............................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TGTGGAAAGTGAAAATT.................................... 17 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0
..........................TACAAAGGTTGATAGC................................................................................................................................................................................................................ 16 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AAGTGAAAATTTGCCTAAAACATTTT..................... 26 0 11 0.45 5 0 1 0 4 0 0 0 0 0 0
......................................................................................................................................................................................................GTGGAAAGTGAAAATTTG.................................. 18 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AGTGAAAATTTGCCTAAAACATTTT..................... 25 0 11 0.27 3 0 3 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TGAGGTTGGTTAAGATTTGTGT.................................................. 22 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AAAACATTTTAATTAAAAACCGGT....... 24 0 20 0.20 4 0 0 0 2 2 0 0 0 0 0
.......................................................................................................................................................................................................................................TTAAAAACCGGTTTAAA.. 17 0 20 0.15 3 0 0 0 0 2 1 0 0 0 0
...............................AGCTTGATAGTTCAAACT......................................................................................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................TTGCCTAAAACATTTTAATTAAAAACCGGT....... 30 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CTAAAACATTTTAATTAAAAACCGGTTT..... 28 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0
........................................................................................................................................................................................................GGAAAGTGAAAATTTGCCTAAAACATTTT..................... 29 0 10 0.10 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TAAAACATTTTAATTAAAAACCGGTT...... 26 0 20 0.10 2 0 0 0 0 0 0 1 0 1 0
.........................................................................................................................................................................................................................CTAAAACATTTTAATTAAAAACCGGTT...... 27 0 20 0.10 2 0 0 0 0 0 2 0 0 0 0
......................................................................................................AAAGTGCTCAGGTACCAC.................................................................................................................................. 18 2 10 0.10 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TAAAACATTTTAATTAAAAACCGGTTT..... 27 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0
...........................................................................................................................................................................................................AAGTGAAAATTTGCCTAAAACATT....................... 24 0 11 0.09 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AAGTGAAACTTTGCCTAAAACATTTT..................... 26 1 11 0.09 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................ATGGAAAGTGAAAATTT................................... 17 1 17 0.06 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................TTGGAAAGTGAAAATT.................................... 16 1 19 0.05 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................CTAAAACATTTTAATTAAAAACCGGT....... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................................AAGTTAAAGTTTGGT.............................................................. 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................AAGGAAAGTGAAAATTTGCCT............................... 21 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................AAAACATTTTAATTAAAAACCGGTTTAAA.. 29 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................ATTTTAATTAAAAACCGGTT...... 20 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................ATTTTAATTAAAAACCGGTTTAAA.. 24 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Generated: 04/24/2015 at 02:14 AM