ID:

dsi_25069

Coordinate:

3l:15931367-15931431 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-13.3	-12.7

Flybase annnotation

CDS [3l_15931355_15931366_+]; five_prime_UTR [3l_15931298_15931354_+]; exon [3l_15931298_15931366_+]; exon [3l_15931432_15931938_+]; CDS [3l_15931432_15931893_+]; intron [3l_15931367_15931431_+]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------################################################## GCAATCACAGCATACCCCCCAAAAAAACCAATCCAAAGATGTTCAAATTCGTGAGTTGTCTAGGAGATGGAAGCCGAGTGCTGGGAGTCCTCTAACCCATTATCCTCCTCCACAGGTCGCCTTCTTCGCCTGCCTGGCTGTGGCCGCCGCTGCCCCCGGTCTGAT ************************************************.....((((..(((((((((.....(((.(((...))).)))....))))....)))))..))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	M024 male body	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis
...............................................................................................CCCATTATCCTCCTCCACAG..................................................	20	0	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................GTCGCCGAGGCTGCCCCCGGT.....	21	3	2	0.50	1	1	0	0	0	0	0	0
......................................ATGTTAAAAGTCGTGAGTCG...........................................................................................................	20	3	4	0.25	1	0	1	0	0	0	0	0
...........................................................................................CTAACCCGTTTTCCTGCTCCA.....................................................	21	3	6	0.17	1	0	0	1	0	0	0	0
....................................................GAGTTGTCGAGGAGA..................................................................................................	15	1	8	0.13	1	0	0	0	1	0	0	0
.....TACAGCATACCATCCAAAAA............................................................................................................................................	20	3	15	0.07	1	0	0	0	0	1	0	0
..................................................................................GGCAGTGCTCTAACCC...................................................................	16	2	20	0.05	1	0	0	1	0	0	0	0
............................CAGTCCGACGATGTTCAAA......................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1
...............................................................................................................................GCCTGCCTGACTGTG.......................	15	1	20	0.05	1	0	0	0	0	0	1	0

Anti-sense strand reads

CGTTAGTGTCGTATGGGGGGTTTTTTTGGTTAGGTTTCTACAAGTTTAAGCACTCAACAGATCCTCTACCTTCGGCTCACGACCCTCAGGAGATTGGGTAATAGGAGGAGGTGTCCAGCGGAAGAAGCGGACGGACCGACACCGGCGGCGACGGGGGCCAGACTA ************************************************.....((((..(((((((((.....(((.(((...))).)))....))))....)))))..))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	SRR902008 ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries
.......................TTATGGTTAGGTTACTACATGTT.......................................................................................................................	23	3	1	2.00	2	2	0	0	0	0
...........................................................................................TTTTGGGTAATAGGAGGCGGT.....................................................	21	3	4	0.25	1	0	1	0	0	0
.............................................................................................TTGGGTAGTAGGGGGAGGT.....................................................	19	2	5	0.20	1	0	0	1	0	0
.......................TTATGGTTAGGTTACTACATGT........................................................................................................................	22	3	7	0.14	1	1	0	0	0	0
...........................................................................................................GGGGTCTCCGGCGGAAGAA.......................................	19	3	14	0.07	1	0	0	0	1	0
..........................................................................................AGATTGGGTAATTGGTG..........................................................	17	2	16	0.06	1	0	0	0	1	0
....................................................................CCTTCGGCTCTCGACCA................................................................................	17	2	16	0.06	1	0	0	0	0	1

Generated: 04/23/2015 at 10:56 PM