ID:

dsi_2506

Coordinate:

3r:4686766-4686915 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-19.1	-19.1	-19.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CAAGTCAAAGGGCAAAGATGAAATTTTAGAGGAATTTGGTAAACTTACAGGTAAATTGACAAAAACAAAATTAACCAAAACTGTATTTTAAATTACCAACACTGGAGCTGCTATCCGCCACTCCGCAATCGGCACTAAATTGTAAACAAAAATCCAATTGGCTAAACCAACAAAGAACATTGGCTAATTGCAGGGACCAAGATTAGTTTACTAGGCTAGGTAGAAAGGGTCGTAGGGTTTTCTTTTTTTT ************************************************..............................(((............((.....(((((..((.....))..))))).....))......................(((((((((((..............)))))))))))))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	O002 Head	SRR553485 Chicharo_3 day-old ovaries	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
...........................................................................................................................................................................................................................GTAGAGAGGGTGGTAGGGTTA..........	21	3	1	1.00	1	0	0	0	1	0	0	0
.........................TTAGAGGAATTTGGTAAACTTACAGG.......................................................................................................................................................................................................	26	0	1	1.00	1	0	0	1	0	0	0	0
.......................................................................................................GGAGCTGCTATCCGCCACTCCGC............................................................................................................................	23	0	1	1.00	1	0	1	0	0	0	0	0
......................ATTTTAGAGGAATTTGGT..................................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0
........................................AAACTTACAGGTAAATTGAC..............................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0
...........GCAAAGATGAAAGTTTA..............................................................................................................................................................................................................................	17	1	5	0.20	1	0	0	0	0	1	0	0
...................GAAATTTGAGAGGAGTT......................................................................................................................................................................................................................	17	2	20	0.10	2	0	0	0	0	0	2	0
..................................TTTGGTAAAGTCACAGG.......................................................................................................................................................................................................	17	2	18	0.06	1	0	0	0	0	0	0	1
...................GAATTTTTAGAGGAGTT......................................................................................................................................................................................................................	17	2	20	0.05	1	0	0	0	0	0	1	0

Anti-sense strand reads

GTTCAGTTTCCCGTTTCTACTTTAAAATCTCCTTAAACCATTTGAATGTCCATTTAACTGTTTTTGTTTTAATTGGTTTTGACATAAAATTTAATGGTTGTGACCTCGACGATAGGCGGTGAGGCGTTAGCCGTGATTTAACATTTGTTTTTAGGTTAACCGATTTGGTTGTTTCTTGTAACCGATTAACGTCCCTGGTTCTAATCAAATGATCCGATCCATCTTTCCCAGCATCCCAAAAGAAAAAAAA ************************************************..............................(((............((.....(((((..((.....))..))))).....))......................(((((((((((..............)))))))))))))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	M024 male body	SRR553486 Makindu_3 day-old ovaries	O002 Head	M053 female body
.................................................................................................................AGGCGGTGAGGCCTAAGCC......................................................................................................................	19	2	2	1.00	2	1	1	0	0	0	0	0
............................................................TTTTTGTTTTAATTGG..............................................................................................................................................................................	16	0	1	1.00	1	0	0	1	0	0	0	0
...............................................................................................................AGAGGCGGTGAGGCCTAAGCC......................................................................................................................	21	3	3	0.67	2	2	0	0	0	0	0	0
.................................................................................................................AGGCGGTGAGGCCTAAGC.......................................................................................................................	18	2	6	0.67	4	1	3	0	0	0	0	0
................................................................................................................................................................CGAGTTGGTTGATTCTTG........................................................................	18	2	4	0.25	1	0	0	0	1	0	0	0
................................................................................................................................................................CGATGTGGTTGATTCTTG........................................................................	18	2	4	0.25	1	0	0	0	1	0	0	0
.................................................................................................................AGGCGGTGAGGCCTAAGCCC.....................................................................................................................	20	3	9	0.22	2	0	0	0	0	2	0	0
..................................................................TTTTAATTGGCTTTGAC.......................................................................................................................................................................	17	1	5	0.20	1	0	1	0	0	0	0	0
.......................................................................................AGTTTAATGGTTCTGACC.................................................................................................................................................	18	2	8	0.13	1	0	0	0	0	0	1	0
........................................TTTGAATGTCAATTTA..................................................................................................................................................................................................	16	1	11	0.09	1	0	1	0	0	0	0	0
..................................................................................................................GGCGGAGAGGCCTTAGC.......................................................................................................................	17	2	20	0.05	1	0	0	1	0	0	0	0
...............................................................................................................................................................CCGATTGGGTTGTTGTTTGT.......................................................................	20	3	20	0.05	1	0	0	0	1	0	0	0
........................................................................................................................................................AGTCTAACCGATTTGGTTC...............................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1

Generated: 04/24/2015 at 10:23 AM