ID:

dsi_25054

 Coordinate:

4:633445-633786 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-35.8 -35.4 -35.4

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ATGCCAAGGCGTCTGCGACGACGAGGGCTACCCTAAGTGCGCAAAGAACGGCAAGTTGATTCGGAAGCTAAAGGCCCGAGGGTCAGAGCAGAACAGTTGCTCGGATACCCTCTGCCTGATTTAACAGCGTATGTATACCAAACGCTGCCCGCAGAGCTGAGCACTAAGCAACGAACACCGAACAAAAAATATGTGGTCGGTGGCGGTGGAGGGACAGTGTTGCTTTGCAGTGACGTTTACGGGTACTGATACCGATAGTGATACGGGTCACACTCCGATTTGCCATTGTGTCGCATTGCCCTAGCCAATCAGGCGCAGACGTTTCTGACCATCCTCCCTATTTAAATTTTTAACAGCTCGATTGGATTGACTGCTGTTATGGCACAACTTCTGAGGGTGCGCGAGGTGAACCATTTCATAAATAAACGAAAGCCCATGGCTA
**********************************************************************************************...(((((((.....((((((.........((((((.((.....)).))))))...)))))))))))))((...((.((..(((((((((.......)))..)))))).)).))...))..*********************************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 GSM343915
embryo
 O001
Testis
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
...............................................................................................................................................................................................TGTGGTCGGTGGCGGTGGAGGGAC................................................................................................................................................................................................................................... 24 0 1 3.00 3 2 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................................................TGGCACAACTTCTGAGGGTGC.......................................... 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
..............................................................................................AGTTGCTCGGATACCCTC.......................................................................................................................................................................................................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.......GGCGTCTGCGACGACGAGGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
................................................CGGCAAGTTGATTCGGAAGC...................................................................................................................................................................................................................................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..............................................................................................AGTTGCTCGGATACCCTCTGC....................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................ACTCCGATTTGCCATTGTGTC...................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
........................................................TGATTCGGAAGCTAAAGG................................................................................................................................................................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..........................................................ATTCGGAAGCTAAAGGCC.............................................................................................................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........GTCTGCGACGACGAGGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................AACAGCTTGATTGGATGGAC....................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................GATTCCGAATCTAAAGGCC.............................................................................................................................................................................................................................................................................................................................................................................. 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................GCGCAAAGAACGGCAAGTTGG............................................................................................................................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................ACTAAGCAACGAACACCGAACAAAA............................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................GTCAGAGCGGAACAGTTGTTT.................................................................................................................................................................................................................................................................................................................................................... 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................AGTTGCTCGGATACCCTCTGCC...................................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................ACAGTTGCTCGGATACCCTCT......................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................GTGGTCGGTGGCGGTGGAGGGAC................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................AACAGTTGCTCGGATACC............................................................................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................TTGCTCGGATACCCTCTGCCT..................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................CTAGCCAATCAGGCGCAGACG......................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........GTCTGCGACGACGAGGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................GTTTGGACACCCTCTGCCTGA................................................................................................................................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................GGGTACGGAGACCGATA......................................................................................................................................................................................... 17 2 8 0.25 2 0 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................TTCCGACGATCCTCCTTATTT................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................................................................................................................................................................................................................TGAACCATTCCGTAAAAAAA................ 20 3 15 0.13 2 0 0 0 0 0 0 0 0 0 2
...............................................................................................................................................................................................................................................................................................................................................................TACAGCTGGCTTGGATTGAC....................................................................... 20 3 9 0.11 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................TGATAACGCTAGTGATATGG................................................................................................................................................................................ 20 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................ACCGACAGTGGTACGAGTC............................................................................................................................................................................. 19 3 11 0.09 1 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................................................................................................CATTGTGTCGCATGG................................................................................................................................................ 15 1 12 0.08 1 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................................................................................................................................................................................ATTGGATTGACTTCTGAT................................................................ 18 2 16 0.06 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................CTTTTCCCACCATCCTCCCT....................................................................................................... 20 3 19 0.05 1 0 0 0 0 1 0 0 0 0 0
.........CGTCTGCAACGACGGG................................................................................................................................................................................................................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................GGGGCAGAGTTGCTTTG....................................................................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

TACGGTTCCGCAGACGCTGCTGCTCCCGATGGGATTCACGCGTTTCTTGCCGTTCAACTAAGCCTTCGATTTCCGGGCTCCCAGTCTCGTCTTGTCAACGAGCCTATGGGAGACGGACTAAATTGTCGCATACATATGGTTTGCGACGGGCGTCTCGACTCGTGATTCGTTGCTTGTGGCTTGTTTTTTATACACCAGCCACCGCCACCTCCCTGTCACAACGAAACGTCACTGCAAATGCCCATGACTATGGCTATCACTATGCCCAGTGTGAGGCTAAACGGTAACACAGCGTAACGGGATCGGTTAGTCCGCGTCTGCAAAGACTGGTAGGAGGGATAAATTTAAAAATTGTCGAGCTAACCTAACTGACGACAATACCGTGTTGAAGACTCCCACGCGCTCCACTTGGTAAAGTATTTATTTGCTTTCGGGTACCGAT
***********************************************************************************************************************************************************************************************************************************...(((((((.....((((((.........((((((.((.....)).))))))...)))))))))))))((...((.((..(((((((((.......)))..)))))).)).))...))..********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 O001
Testis
 O002
Head
.............................................................................................................................................................................................................................................................................TGTGAGGCTAAACGGTAACACAGC..................................................................................................................................................... 24 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................CTCGTGATTCGTTGCTTGTGGCTTGT.................................................................................................................................................................................................................................................................. 26 0 1 2.00 2 0 0 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAAAGTATTTATTTGCTTTCGGGT...... 27 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................CGTGATTCGTTGCTTGTGGCTTGT.................................................................................................................................................................................................................................................................. 24 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0
..........................................................................GGGCTCCCAGTCTCGTCTTGT........................................................................................................................................................................................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0
..............................................................................................................................................................CTCGTGATTCGTTGCTTGTGGCTTT................................................................................................................................................................................................................................................................... 25 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................GGCAGGATGGATAAATTTCA.............................................................................................. 20 3 5 1.20 6 0 3 0 1 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GCCACCTCCCTGTCACAACGAAACGTCA................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TGCGACGGGCGTCTCGACTCGTGAT.................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................CAGTGTGAGGCTAAACGGTAA........................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................TAGTCCGCGTCTGCAAAGACTGGT............................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................CCCCAGTCTCGTCTTGTC.......................................................................................................................................................................................................................................................................................................................................................... 18 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................CGATGGGATTCACGCGTTTCTTGCCGTT.................................................................................................................................................................................................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................ATGGGAGACGGACTAAATTGTCGCAT....................................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................ATGCCCGTGACCATGGCTATCACTAT................................................................................................................................................................................... 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................GCAGGATGGATAAATTTCAAA............................................................................................ 21 3 3 1.00 3 0 0 0 0 0 2 0 0 0 0 1 0 0
..................................................................CGATTTCCGGGCTCCCAGTCTCGTCTT............................................................................................................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................ATGGCTATCACTATGCCCAGTGTGA........................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................CTCGTGATTCGTTGCTTGGGGCTTT................................................................................................................................................................................................................................................................... 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................CGACTCGTGATTCGTTGCTTGTGGC...................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................CGTGATTCGTTGCTTGCGGCTTGTT................................................................................................................................................................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................GGGCGTCTCGACTCGTGATTCGTTGCT............................................................................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................ATGCCCAGTGTGAGGCTAAACGGTA............................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TGGGAGACGGACTAAATTGTCGCAT....................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CGGGCGTCTCGACTCGTGATTCGTTGCT............................................................................................................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................................CTGACGACAATACCGTGTTGAAGACT................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TTGCGACGGGCGTCTCGACTCGTGAT.................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CCCAGTCTCGTCTTGTCAACGAGCC.................................................................................................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................................................CAATACCGTGTTGAAGA.................................................. 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................TGGTAGGAGGGATAAATTTAAAAAT.......................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................GTCCGGGCTCCCAGTCTCGTCTTGT........................................................................................................................................................................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................CTGGTAGGAGGGATAAATTT................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................GCTGCTCCCGATGGGATTCACGCG................................................................................................................................................................................................................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................TGTGAGGCTAAACGGTAACACAGCGT................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................CTAAACGGTAACACAGCGTAACGGGAT........................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................CTCGTCTTGTCAACGAGCCTA................................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................ACGCGTTTCTTGCCGTTCAACTAAGCCT......................................................................................................................................................................................................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................AGGAGGGATAAATTTAAAAATTGT....................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TGTCAACGAGCCTATGGGAGACGGA..................................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................TGTCGAGCTAACCTAACTGACGACA................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................GGCAGGATGGATAAATTTCAAA............................................................................................ 22 3 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................GGTAGGATGGATAAATTT................................................................................................ 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TGGGAGACGGACTAAATTGTCGCA........................................................................................................................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................ATACATATGGTTTGCGACGGGCGT................................................................................................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................TAGGAGGGATAAATTTAAAAA........................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................CCCCTGTCACAACGAAACGTCACT................................................................................................................................................................................................................. 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................GTGATTCGTTGCTTGTGGCTTGTTTTT.............................................................................................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TTTGCGACGGGCGTC................................................................................................................................................................................................................................................................................................ 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................CGTGATTCGTTGCTTGTGGCTTGTTT................................................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................TTGCGACGGGCGTCTCGACTCGT....................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................GACTCGTGATTCGTTGCTTGTGGCT..................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................CGGGATCGGTTAGTCCGCGT............................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CTCGACTCGTGATTCGTTGCTTGTGGCT..................................................................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................CCAGTGTGAGGCTAAACGGT............................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................AGGATGGATAAATTTC............................................................................................... 16 2 20 0.85 17 0 17 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................AGGATGGATAAATTTCAA............................................................................................. 18 2 7 0.57 4 0 2 0 1 0 0 0 1 0 0 0 0 0
................................................................................................................AAGGACTAAATTTTCGTATACAT................................................................................................................................................................................................................................................................................................................... 23 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................GGCAGGATGGATAAATTTCAA............................................................................................. 21 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................AAGCCTTGGATTTCC................................................................................................................................................................................................................................................................................................................................................................................ 15 1 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................GATTCGTTGCTTGCGG....................................................................................................................................................................................................................................................................... 16 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CCGATCAACTAAGCCGTCCA..................................................................................................................................................................................................................................................................................................................................................................................... 20 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................GGCAGGATGGATAAATTT................................................................................................ 18 2 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................GCAGGATGGATAAATTTCA.............................................................................................. 19 3 16 0.25 4 0 0 0 0 2 1 0 0 0 0 1 0 0
........................................................................................................................................................................................................................................................................................................................................GGCAGGATGGATAAATT................................................................................................. 17 2 8 0.25 2 0 2 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................CAGTGGAAGGCTGAACGGTA............................................................................................................................................................ 20 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................CGAGTCGTGAGTCGTTGC............................................................................................................................................................................................................................................................................. 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................AGGATGGATAAATTT................................................................................................ 15 1 19 0.21 4 0 3 0 0 0 0 1 0 0 0 0 0 0
.........................................................................CGGGCTCCCAGTCTGGTT............................................................................................................................................................................................................................................................................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................AGGATGGATAAATTTCAAACT.......................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................AGGATGGATAAATTTCA.............................................................................................. 17 2 20 0.20 4 0 1 0 0 0 0 1 0 0 2 0 0 0
.........................................................................................................................................................................................................................................................................................................................................GCAGGATGGATAAATTTCAA............................................................................................. 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................AATAAGGCTTGGATTTCCG............................................................................................................................................................................................................................................................................................................................................................................... 19 3 12 0.17 2 0 0 0 0 0 0 0 0 0 2 0 0 0
........................................................................CCGGGCTCCAAGTCT................................................................................................................................................................................................................................................................................................................................................................... 15 1 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................GCCGATCAACGAAGCCGTC....................................................................................................................................................................................................................................................................................................................................................................................... 19 3 19 0.16 3 0 0 0 0 0 0 0 0 0 0 0 2 1
............................................................................................................................................................................................................................................................................................................................................GGATGGATAAATTTCAA............................................................................................. 17 2 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................GATTCGTTGGTTGTG........................................................................................................................................................................................................................................................................ 15 1 14 0.14 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................GATTCGTTGGTTGTGG....................................................................................................................................................................................................................................................................... 16 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CCGATCAACGAAGCCTT........................................................................................................................................................................................................................................................................................................................................................................................ 17 2 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................GGCAGGATGGATAAAT.................................................................................................. 16 2 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.................................................CCGATCAACTAAGCCGTCC...................................................................................................................................................................................................................................................................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................GCAGGATGGATAAATTT................................................................................................ 17 2 12 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................TAAGGCTTGGATTTCCG............................................................................................................................................................................................................................................................................................................................................................................... 17 2 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................................................................................................................................AGGATGGATAAATTTCAAAC........................................................................................... 20 3 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................GTGATTCGTTGGTTG.......................................................................................................................................................................................................................................................................... 15 1 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................TGACCAGTGTGAGGTTA................................................................................................................................................................... 17 2 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............ACCCTGCTGATCCCGA............................................................................................................................................................................................................................................................................................................................................................................................................................. 16 2 18 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................GAATCCACTCGTTTCTTGC........................................................................................................................................................................................................................................................................................................................................................................................................ 19 3 18 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................CGTTGCTAGTGGCATG................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................................................................................................................................TAGGAGGGTTAAATGT................................................................................................ 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................CAGGATGGATAAATTTCAA............................................................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................CAAAGAGTGGTAGCGGGGA....................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................AGGCTTGGATTTCCGTGC............................................................................................................................................................................................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................................................................................................................................GTAGGAGAGGTAACTTTAA.............................................................................................. 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................ACGGGTTGCGACGGGC................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 4:633395-633836 - dsi_25054 AT---------GCCAAGGCGTCTGCGACGACGAGGGCTACCCTAAGTGCGCAAAGAACGGCAAGTTGATTCGGAAGCTAAAGGCCC---GAGGGTCAGAGCAGAACAG--------TTGCTCGGATACCC----TCTGCCTGATTTAACAG------CGTATGTATACCAAACGCTGCC-CGCAGAGC-------------------------------------TGAGCACTAAGCAACGAACACCGAACAAAA-AAT---------ATGTGGTCGGT------------------GGCGGTGGAGGGACA--GTGTTGCTTTGCAGTGACGTTTACGGGTACTGATACCGATAGTGATACGGGTCACACTCCGATTTG-CCATTGTGT----------------------------CGCATT-----G---CCCTAGCCAATCAGGCGCAG--AC---GTTTCT--GACC--ATCCTCCCTAT--TTAAA-TT-TTTAACAGCT--CGATTGGATTGACT------GCTGTTATGGCACAACTTCTGAGGGTGCGCGAGGTGAACCATTTCATAAATAAACGAAAG--CCCATGGCTA
droSec2 scaffold_30:532774-533215 - AT---------GCCAAGGCGTCTGCGACGACGAGGGCTACCCTAAGTGCGCAAAGAACGGCAAGTTGATTCGGAAGCTAAAGGCCC---GAGGGTCAGAGCAGAACAG--------TTGCTCGGATACCC----TCTGCCTGATTTAACAG------CGTATGTATACCAAACGCTGCC-CGCAGAGC-------------------------------------TGAGCACTAAGCAACGAACACCGAACAAAA-AAT---------ATGTGGTCGGT------------------GGCGGTGGAGGGACA--GTGTTGCTTTGCAGTGACGTTTACGGGTACTGATACCGATAGTGATACGGGTCACACTCCGATTTG-CCATTGTGT----------------------------CGCATT-----G---CCCTAGCCAATCAGGCGCAG--AC---GTTTCT--GACC--ATCCTCCCTAT--TTAAA-TT-TTTAACAGCT--CGATTGGATTGACT------GCTGTTATGGCACAACTTCTGAGGGTGCGCGAGGTGAACCATTTGATAAATAAACGAAAG--CCCATGGCTA
dm3 chr4:827497-827939 - AT---------GCCAAGGCGTCTGCGAAGACGAGGGCTACCCTAAGTGCGCAAAGAACGGCAAGTTGATTCGGAAGCTAGAGCCCC---GAGGGTCAGAGCGGAACAG--------TTGTTTGGACACCC----TCTGCCTGATTTCACAG------CGTATGTATACAAAACGCTGCC-CGCAGAAC-------------------------------------TGAGCACTAAGCAACGAACACCGAACAAAAAAAT---------ATTTGGTCGGT------------------GGCGTTAGAGGGACA--GTGTTGCTGTGCAGTGACGTTTACGGGCACTGATACCGATAGTGATACAGGTCACATTCCGATTTG-CCATTGTGT----------------------------CGCATT-----G---CCCTAGCCAATCAGGCGCAG--AC---GTTTCT--GACC--ATCCTCCCTAT--TGAAA-TT-TTTAACAGCT--CGATTGGATTGACA------GCTGTAATGGCACAACTTCTCTGGATGCGCGAGGTGAACCACCTGATAAATTAACGAAAG--CTCATGGCTA
droEre2 scaffold_4512:440657-441064 + AT---------GCCATGGCGTCTGCGACGACGAGAGCTACTCTAAGTGCGCACAGAACGACAAGTGGATTCGGAAGT------------------TAGAGCAGAACAG--------TTGCTTGGATAC------ACTGCCCGATTTCACAG------CGTATGTATACCGAACGCTGCC-CGCAGA---------------------------------------------------------------ACAAAA-------CAGACAAACTGGTCGGT------------------GGCGGTGGAGGGACG--GTGTGGATATGCAGTGACGTTTACGGGTACTGATACCGATAGTGATACGCGTCACACTCCGATTTG-CCATTGTGT----------------------------CGCATT-----G---CTCTAGCCAATCAGGCGCAG--AT---GTTTCG--GGCC--ATCCTCCCTAT--TAAAA-TTTTTCAATTGCT--CGACAGGATTGATGGCACA-ACTGTAATGGCACAACTCCTGGGGATGCGCAAGGTGAACCACCTGATATATTTAGAAACA--CCCATGGCTA
droYak3 4:891373-891783 - AT---------GCCAAGGCGTCTGCGACGACGAGGGCTACCCTAAGAGCGCAAGGAATGACAAGTAGATTCGGATGTTAAAGCACC---GAGGGTCACAGCAGAACAG--------TT--ACGGATAC------CCTGCCCGATTTCACAG------CGTATGTATACCGAACGCTGTC-CGGAGAAC---------------------------------------------------------------AAAA-------CAGACA-----GACAGA------------------AAAGGTGGAGGGACA--GTGTTTCTATGCAGTGACGTTTACGGGTACTGATACCGATAGTGATACGCGTCACACTCCGATTTG-CCATTGTGT----------------------------CGCATT-----G---CTCTGGCCAATCAGGCGCAG--AT---GTTTCG--GGCC--ATCCTACCTAG--TACAA-TTTTACAACTGCT--CGACATGATTGACT------GCTGCAATGGCACAACTCCTGAGGATGCGCGAGGTGAACCACCTGATATATTTACGAACA--CCCATAGTTA
droEug1 scf7180000408984:387477-387870 + AT---------G-----------------------GCGAGCATAAGTGGACAGAGTACGGCATGTGGATTCGGA-------ATCCC---GAGAAGCAGAGCAGCACGG--------TCTTTTAAATAC------TCTGTCAGAATAAATAG------CCAATGTAAAACGAACACTGACAGTGAGAGCAGGGAG-----------------------------------CATTGAGA-------ACAGGGCAAGG-------CTGCCAGCCTAGTCGGT------------------AGCGGTGAAGCAACA--TTGTCGCTTGGCTGTGACTTGTACGGGCACTGATACCGATACG-----------------GATTTG-CCATTGTGT----------------------------CGCATT-----G---CGCTGGCCAATCAGGCACAG--AC---TTTTTG--GGCC--ATCCTCCCTAT--TTACA-TTTTTCCACTGCT--CTATAGCATTGACTT-----GCTGTAATGGCACAACTCTTGACGATGCGCGAGGTGAGCCACCTACCTAATTTATCAGGA--CCCATAGTGC
droBia1 scf7180000301495:742965-743407 - ATGCAGCAGATGCCAAGGCGGTGGCGACGA----GGCGAGCGTAAGTGCACAGAG-ACGGCAGGTGGAATCGCG-------GGCCC---GAGAGGCAAAACAGCACGTTCGTTTGG--ATTTGGATAC------CCTGTCCGAATGGATAG------CCCATGTATGCCGAACGCTGCCTCGGAGAGCAGCGAG-----------------------------------CTCTGAGTG------------------------------------TCGGTGGATGTGGACGTGGAGGTGGAGGTGGAGGAACG--CTGTCGCTTGGCAGTGACGTTTACGGGTACTGATACCGATACGGATACGCGTCACGCTGCGATTTG-CTATTGTGT----------------------------CGCGTC-----G---CCCTGGCCAATCAGGCACAG--AC---CTTTCG--GGCC--ATCCTCCCTAT--TTAAA-TT-TTGAACTGCT--CGACAGGATTGACTT-GCTTGCTGTAATGGCACAACTCTTGACGATGCGCGAGGTGAGCCACCTGCTACATTTACCAAGA--GCCATAGCTA
droTak1 scf7180000414739:6707-7168 + AT---------GCCAAGGCG---GCGACGACGAGGGCCAGCGTAAGTGCACAGAGTACGGCAAGTGGAGT-------------CCC---GAGGG-CAGAGCAGAACCGTCATTTGG--ATTTGGATAC------CCTGCCGGAATGGATGG------CCAATGTGTGCCGAATGCTGCCTCTGAGAGCGGCGAGCACTGACAAC---------------------CGAGCACTGAGCACCGAGCTTTGAGCAAAG-------CAGGCAACGTGGTCGGTGGAGGT------GGAGGTGGAGGTGGAGGAACA--CTGGCGCTTGGCAGTGACGTTTACGGGTACTGATACCGATACGGATACGCGTCACGCTGCGATTTG-CTATTGTGT----------------------------CGCATT-----G---CCCTGGCCAATCAGGCGCAG--AC---CTTTCG--GGCC--ATCCTCCTTAT--TTAAA-TT-TTCAACTGCT--CGACAAGACTGACTT-----GCTGTAATGGCACAACTCTTGACGATGCGCGAGGTGAGCCACCTGCTGTATTTACCAAGA--TTCAAAGCTA
droEle1 scf7180000491238:387285-387763 + AT---------GCCAAGGCG-----------GAGGGCGGACGTAAGAGCTCTGAGTACGGCAAGTGGAATCAAAATCGAA-ATCCC---GAGGG---------------CGTTTGG--ACTTGGATACCCATACCCTGCCCGAATGAATACCCATACCCACTGTGTCCCGAGTGCTGGCTCTGAGAGCAGTGAGCAGTGAGCAGTGAGCATTGAGCAGTGAGCAGTGAGCATTGAGCAGTGGGCACTGAGCATAAGCATAGCCAAGCAACCTGGTCGTA------------------GGCGGTGGAAGAAGA--GGGTCGCTTGGCAGTGACGTTTACGGGTGCTGATACCGATACGGACACGCGTCACGCTGCGATTTG-CCATTGTGT----------------------------CGCATT-----G---CCCTGGCCAATCAGGCGCAG--AC---CTTTCG--GGCC--ATCCTCCCTGT--TTAAA-TTGTTGAACTGCT--CGACAGGATTGACTT-----GCTGTAATGGCACAACTGTTGACGATGCGCGAGGTGAGCCACCTGCTATATTTATCAAGA--TCTGTGGC--
droRho1 scf7180000779685:46364-46798 + AT---------ACCAAGGCG---GCGACGAAGAGGGCGAGCATAAGTGCACTGAGGACGGCAAGTGAAGTCGAAATCGGA-ATCCC---GAGGG---------------CGTCTGG--ACTTGGATAC------CCTGCCCGAATGGATAC------CCAATGTGTGCCGAATGCTGGCACTGAGAGCAGTGA-----------------------------------GCGTTGAGCATTGGGCACTGAGCATAA-------CAAGCAACCTGGTCGAA------------------GGTGGTGGAGGAACA--GGGTCGCTTGGTAGTGACGGTTGCGGGTTCTGATACCGATACGGACACGCGTCACGCTGCGATTTG-CCATTGTGT----------------------------CGCATC-----G---CCCTGGCCAATCAGGCGCAG--AC---CTTTCG--GGCC--ATCCTCCCTAT--TTAAA-TTGTTCAACTGCT--CGACAGGATTGACTT-----GCTGTAATGGCACAACTGTTGACGATGCGCGAGGTGAGCCACCTGCTATATTTATCAAGA--TCTATAGTTA
droFic1 scf7180000454040:408965-409398 - AT----------CCAAGTCGGCGGTGACGA------CGACCGTAAGTGCACAGGGTGCAGCAAGTGAAATCGAA-------GTCCCATAGAGGGT--------------CGTTTGGTCGTTTGGAGAC------CCTGGCCGAATGAACAA------CCAATTTTTACCGAGTGCT----CTGAGAGCAGCGAT-------------------------------GGGACTCTGAGCACTGAGCACTGAGCAAA--------CTAGCAAACTGGTTGGC------------------GTCGGTGGAGGAACACAGTGTCGCTTGGCAGTGACGTTTATGGGTACTGATACTGATACGGATACGCGTCACGCTGCGATTTG-CCATTGTGT----------------------------CGCATC-----G---CTCTGGCCAATCAGGCGCAG--AC---CTTTCG--GGCC--AACCTCCCTGT--TTAAA-CATTTTTACGGCT--CGACAGGATTGACTG-----GCTGTTATGGCAGAACTGTTGACGATGCGCGAGGTGAGCCACCTGCTATATTTACCAAGATATCTATAGCTA
droKik1 scf7180000302766:70405-70594 + TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGTTACGGATACCGATACGGATACGGATACGGATACGGGATACAC-GCGATTTGTCCATTGTCT-------------------------CATCGCACTTCGTTGGCTCTCTGGCCAATCAGGCGCAGTGACTGATTTTCTGGGGCCACATCCCCCTTATGTTTAACATT-TTG---TGCTGGCAGCAAGATTGACTT-ACT-TGTGTAATGGCGCAAC--------------------------------------------------------
droAna3 scaffold_13767:1399195-1399247 + AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----AATGTAATGGCACAACTATTGACGATGCGCGAGGTGAGCCACATGATAAA----------------------
droBip1 scf7180000396485:16662-16704 - AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----AATGTAATGGCACAAATATTGACGATGCGAGAGGTGAGCC--------------------------------
dp5 Unknown_group_43:79914-80038 + AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCACACGGATACGCGTCTCGTTGCGATTTG-TCATTGTGTAAGGCAAGAAAAGGTGTCTGTTCCGCAACGCAGT-----G---CCTCAGCCAATCAGGCAAAA--AA-CATTTTTT--GGCC--ATCCCACTCAT--TT---------------------------------------------------------------------------------------------------------------
droPer2 scaffold_103:147741-147865 + AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCACACGGATACGCGTCTCGTTGCGATTTG-TCATTGTGTAAGGCAAGAAAAGGTGTCTGTTCCGCAACGCAGT-----G---CCTCAGCCAATCAGGCAAAA--AA-CATTTTTT--GGCC--ATCCCACTCAT--TT---------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12855:1999079-1999119 - GC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGACGTTAAAAGTTTAATAAATAAATGAATC--CCCATGG---

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AT---------GCCAAGGCGTCTGCGACGACGAGGGCTACCCTAAGTGCGCAAAGAACGGCAAGTTGATTCGGAAGCTAAAGGCCC---GAGGGTCAGAGCAGAACAG--------TTGCTCGGATACCC----TCTGCCTGATTTAACAG------CGTATGTATACCAAACGCTGCC-CGCAGAGC-------------------------------------TGAGCACTAAGCAACGAACACCGAACAAAA-AAT---------ATGTGGTCGGT------------------GGCGGTGGAGGGACA--GTGTTGCTTTGCAGTGACGTTTACGGGTACTGATACCGATAGTGATACGGGTCACACTCCGATTTG-CCATTGTGT----------------------------CGCATT-----G---CCCTAGCCAATCAGGCGCAG--AC---GTTTCT--GACC--ATCCTCCCTAT--TTAAA-TT-TTTAACAGCT--CGATTGGATTGACT------GCTGTTATGGCACAACTTCTGAGGGTGCGCGAGGTGAACCATTTCATAAATAAACGAAAG--CCCATGGCTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................TGTGGTCGGT------------------GGCGGTGGAGGGAC.................................................................................................................................................................................................................................................................................................2413.00321000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCACAACTTCTGAGGGTGC............................................2112.00200000000200000000
..........................................................................................................AG--------TTGCTCGGATACCC----TC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000000000000000
................GGCGTCTGCGACGACGAGGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00220000000000000000
.........................................................CGGCAAGTTGATTCGGAAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00220000000000000000
..........................................................................................................AG--------TTGCTCGGATACCC----TCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................ACTCCGATTTG-CCATTGTGT----------------------------C.....................................................................................................................................................................................2111.00100000000000100000
.................................................................TGATTCGGAAGCTAAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
...................................................................ATTCGGAAGCTAAAGGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
...................GTCTGCGACGACGAGGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
...............................................GCGCAAAGAACGGCAAGTTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
......................................................................................................................................................................................................................................ACTAAGCAACGAACACCGAACAAAA-........................................................................................................................................................................................................................................................................................................................................................2511.00110000000000000000
..........................................................................................................AG--------TTGCTCGGATACCC----TCTGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
........................................................................................................ACAG--------TTGCTCGGATACCC----TCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000100000000000
..............................................................................................................................................................................................................................................................................GTGGTCGGT------------------GGCGGTGGAGGGAC.................................................................................................................................................................................................................................................................................................2311.00110000000000000000
.......................................................................................................AACAG--------TTGCTCGGATACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
....................................................................................................................TTGCTCGGATACCC----TCTGCCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGCCAATCAGGCGCAG--AC---G...........................................................................................................................................2111.00100000000001000000
...................GTCTGCGACGACGAGGGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
droSec2
AT---------GCCAAGGCGTCTGCGACGACGAGGGCTACCCTAAGTGCGCAAAGAACGGCAAGTTGATTCGGAAGCTAAAGGCCC---GAGGGTCAGAGCAGAACAG--------TTGCTCGGATACCC----TCTGCCTGATTTAACAG------CGTATGTATACCAAACGCTGCC-CGCAGAGC-------------------------------------TGAGCACTAAGCAACGAACACCGAACAAAA-AAT---------ATGTGGTCGGT------------------GGCGGTGGAGGGACA--GTGTTGCTTTGCAGTGACGTTTACGGGTACTGATACCGATAGTGATACGGGTCACACTCCGATTTG-CCATTGTGT----------------------------CGCATT-----G---CCCTAGCCAATCAGGCGCAG--AC---GTTTCT--GACC--ATCCTCCCTAT--TTAAA-TT-TTTAACAGCT--CGATTGGATTGACT------GCTGTTATGGCACAACTTCTGAGGGTGCGCGAGGTGAACCATTTGATAAATAAACGAAAG--CCCATGGCTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTTAACAGCT--CGATTGGAT...................................................................................2011.0010001
...............................................................................................................................................................................................................................................................................................................................................................................................ATTGTGT----------------------------CGCATT-----G---CCCTAGCCAA.............................................................................................................................................................2411.0010001
.............................................................................................................................................................................................................................................................................TGTGGTCGGT------------------GGCGGTGGAGGGA..................................................................................................................................................................................................................................................................................................2311.0010001
.................................................................................................................................................................................................................................................................................................................................TTTGCAGTGACGTTTACGGGTACTGA.............................................................................................................................................................................................................................................................2611.0010001
................................................................TTGATTCGGAAGCTAAAGGCCT---T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001
............................................................................................................................................................................................................................................................................ATGTGGTCGGT------------------GGCGGTGGAGGGAC.................................................................................................................................................................................................................................................................................................2511.0010001
............................................................................................................................................................................................................................................................................ATGTGGTCGGT------------------GGCGGTGGAGGGA..................................................................................................................................................................................................................................................................................................2411.0010001
dm3
AT---------GCCAAGGCGTCTGCGAAGACGAGGGCTACCCTAAGTGCGCAAAGAACGGCAAGTTGATTCGGAAGCTAGAGCCCC---GAGGGTCAGAGCGGAACAG--------TTGTTTGGACACCC----TCTGCCTGATTTCACAG------CGTATGTATACAAAACGCTGCC-CGCAGAAC-------------------------------------TGAGCACTAAGCAACGAACACCGAACAAAAAAAT---------ATTTGGTCGGT------------------GGCGTTAGAGGGACA--GTGTTGCTGTGCAGTGACGTTTACGGGCACTGATACCGATAGTGATACAGGTCACATTCCGATTTG-CCATTGTGT----------------------------CGCATT-----G---CCCTAGCCAATCAGGCGCAG--AC---GTTTCT--GACC--ATCCTCCCTAT--TGAAA-TT-TTTAACAGCT--CGATTGGATTGACA------GCTGTAATGGCACAACTTCTCTGGATGCGCGAGGTGAACCACCTGATAAATTAACGAAAG--CTCATGGCTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................AGCTAGAGCCCC---GAGGGTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21163.006300000000000000000000000000000000000000000000001000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003120001100304200000000000000000000000000000000000150000060000000001100000300000000000000000000000000000000000000000000000000000000000000000000002000000001000000310000000000000000622000000
...............................................................................................................................................................................................................................................................................................................AGAGGGACA--GTGTTGCTGTGC..................................................................................................................................................................................................................................................................................21153.0053000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000301001000000000000000000000000000000000000000014000000000000001000000011100000000020000000000000000000000000000000000000000000000000000000000011200000101000000040000000000000002331000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCT--CGATTGGATTGACA------G.......................................................................21150.005000000000000000000000000000000000000000000200000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110180000200000100000000000000000000000000000000000000000000000001000000000000100000000000000000000000000000000000000000000000000000000020000000002000000015000000420000000000000001221000000
........................................................................GAAGCTAGAGCCCC---GAGGGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21142.004200000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600100004000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000016200010010000000120000000000000001001000000
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......................................................................................................................................................................................................................................................................................T------------------GGCGTTAGAGGGACA--GTGTTGC.......................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
droEre2
AT---------GCCATGGCGTCTGCGACGACGAGAGCTACTCTAAGTGCGCACAGAACGACAAGTGGATTCGGAAGT------------------TAGAGCAGAACAG--------TTGCTTGGATAC------ACTGCCCGATTTCACAG------CGTATGTATACCGAACGCTGCC-CGCAGA---------------------------------------------------------------ACAAAA-------CAGACAAACTGGTCGGT------------------GGCGGTGGAGGGACG--GTGTGGATATGCAGTGACGTTTACGGGTACTGATACCGATAGTGATACGCGTCACACTCCGATTTG-CCATTGTGT----------------------------CGCATT-----G---CTCTAGCCAATCAGGCGCAG--AT---GTTTCG--GGCC--ATCCTCCCTAT--TAAAA-TTTTTCAATTGCT--CGACAGGATTGATGGCACA-ACTGTAATGGCACAACTCCTGGGGATGCGCAAGGTGAACCACCTGATATATTTAGAAACA--CCCATGGCTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................TATGCAGTGACGTTTACGGGTACTGA.............................................................................................................................................................................................................................................................2611.0010000100
.......................................................AACGACAAGTGGATTCGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
........................................................................................................................................................................................................................................................................................................................................TGACGTTTACGGGTACTGATACCGATA.....................................................................................................................................................................................................................................................2711.0011000000
...........................................................ACAAGTGGATTCGGAAGT------------------TAGAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
......................TGCGACGACGAGAGCTACTCTAAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001000
droYak3
AT---------GCCAAGGCGTCTGCGACGACGAGGGCTACCCTAAGAGCGCAAGGAATGACAAGTAGATTCGGATGTTAAAGCACC---GAGGGTCACAGCAGAACAG--------TT--ACGGATAC------CCTGCCCGATTTCACAG------CGTATGTATACCGAACGCTGTC-CGGAGAAC---------------------------------------------------------------AAAA-------CAGACA-----GACAGA------------------AAAGGTGGAGGGACA--GTGTTTCTATGCAGTGACGTTTACGGGTACTGATACCGATAGTGATACGCGTCACACTCCGATTTG-CCATTGTGT----------------------------CGCATT-----G---CTCTGGCCAATCAGGCGCAG--AT---GTTTCG--GGCC--ATCCTACCTAG--TACAA-TTTTACAACTGCT--CGACATGATTGACT------GCTGCAATGGCACAACTCCTGAGGATGCGCGAGGTGAACCACCTGATATATTTACGAACA--CCCATAGTTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................GAGGGCTACCCTAAGAGCGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
..............................................................AGTAGATTCGGATGTTAAAGCACC---...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
...................GTCTGCGACGACGAGGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000
...........................................................ACAAGTAGATTCGGATGTTAAAGCAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
....................................................................................................................................................CAG------CGTATGTATACCGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000
droEug1
AT---------G-----------------------GCGAGCATAAGTGGACAGAGTACGGCATGTGGATTCGGA-------ATCCC---GAGAAGCAGAGCAGCACGG--------TCTTTTAAATAC------TCTGTCAGAATAAATAG------CCAATGTAAAACGAACACTGACAGTGAGAGCAGGGAG-----------------------------------CATTGAGA-------ACAGGGCAAGG-------CTGCCAGCCTAGTCGGT------------------AGCGGTGAAGCAACA--TTGTCGCTTGGCTGTGACTTGTACGGGCACTGATACCGATACG-----------------GATTTG-CCATTGTGT----------------------------CGCATT-----G---CGCTGGCCAATCAGGCACAG--AC---TTTTTG--GGCC--ATCCTCCCTAT--TTACA-TTTTTCCACTGCT--CTATAGCATTGACTT-----GCTGTAATGGCACAACTCTTGACGATGCGCGAGGTGAGCCACCTACCTAATTTATCAGGA--CCCATAGTGCSizeHit CountTotal NormTotal
No Reads
droBia1
ATGCAGCAGATGCCAAGGCGGTGGCGACGA----GGCGAGCGTAAGTGCACAGAG-ACGGCAGGTGGAATCGCG-------GGCCC---GAGAGGCAAAACAGCACGTTCGTTTGG--ATTTGGATAC------CCTGTCCGAATGGATAG------CCCATGTATGCCGAACGCTGCCTCGGAGAGCAGCGAG-----------------------------------CTCTGAGTG------------------------------------TCGGTGGATGTGGACGTGGAGGTGGAGGTGGAGGAACG--CTGTCGCTTGGCAGTGACGTTTACGGGTACTGATACCGATACGGATACGCGTCACGCTGCGATTTG-CTATTGTGT----------------------------CGCGTC-----G---CCCTGGCCAATCAGGCACAG--AC---CTTTCG--GGCC--ATCCTCCCTAT--TTAAA-TT-TTGAACTGCT--CGACAGGATTGACTT-GCTTGCTGTAATGGCACAACTCTTGACGATGCGCGAGGTGAGCCACCTGCTACATTTACCAAGA--GCCATAGCTASizeHit CountTotal NormTotal
No Reads
droTak1
AT---------GCCAAGGCG---GCGACGACGAGGGCCAGCGTAAGTGCACAGAGTACGGCAAGTGGAGT-------------CCC---GAGGG-CAGAGCAGAACCGTCATTTGG--ATTTGGATAC------CCTGCCGGAATGGATGG------CCAATGTGTGCCGAATGCTGCCTCTGAGAGCGGCGAGCACTGACAAC---------------------CGAGCACTGAGCACCGAGCTTTGAGCAAAG-------CAGGCAACGTGGTCGGTGGAGGT------GGAGGTGGAGGTGGAGGAACA--CTGGCGCTTGGCAGTGACGTTTACGGGTACTGATACCGATACGGATACGCGTCACGCTGCGATTTG-CTATTGTGT----------------------------CGCATT-----G---CCCTGGCCAATCAGGCGCAG--AC---CTTTCG--GGCC--ATCCTCCTTAT--TTAAA-TT-TTCAACTGCT--CGACAAGACTGACTT-----GCTGTAATGGCACAACTCTTGACGATGCGCGAGGTGAGCCACCTGCTGTATTTACCAAGA--TTCAAAGCTASizeHit CountTotal NormTotal
No Reads
droEle1
AT---------GCCAAGGCG-----------GAGGGCGGACGTAAGAGCTCTGAGTACGGCAAGTGGAATCAAAATCGAA-ATCCC---GAGGG---------------CGTTTGG--ACTTGGATACCCATACCCTGCCCGAATGAATACCCATACCCACTGTGTCCCGAGTGCTGGCTCTGAGAGCAGTGAGCAGTGAGCAGTGAGCATTGAGCAGTGAGCAGTGAGCATTGAGCAGTGGGCACTGAGCATAAGCATAGCCAAGCAACCTGGTCGTA------------------GGCGGTGGAAGAAGA--GGGTCGCTTGGCAGTGACGTTTACGGGTGCTGATACCGATACGGACACGCGTCACGCTGCGATTTG-CCATTGTGT----------------------------CGCATT-----G---CCCTGGCCAATCAGGCGCAG--AC---CTTTCG--GGCC--ATCCTCCCTGT--TTAAA-TTGTTGAACTGCT--CGACAGGATTGACTT-----GCTGTAATGGCACAACTGTTGACGATGCGCGAGGTGAGCCACCTGCTATATTTATCAAGA--TCTGTGGC--SizeHit CountTotal NormTotal
No Reads
droRho1
AT---------ACCAAGGCG---GCGACGAAGAGGGCGAGCATAAGTGCACTGAGGACGGCAAGTGAAGTCGAAATCGGA-ATCCC---GAGGG---------------CGTCTGG--ACTTGGATAC------CCTGCCCGAATGGATAC------CCAATGTGTGCCGAATGCTGGCACTGAGAGCAGTGA-----------------------------------GCGTTGAGCATTGGGCACTGAGCATAA-------CAAGCAACCTGGTCGAA------------------GGTGGTGGAGGAACA--GGGTCGCTTGGTAGTGACGGTTGCGGGTTCTGATACCGATACGGACACGCGTCACGCTGCGATTTG-CCATTGTGT----------------------------CGCATC-----G---CCCTGGCCAATCAGGCGCAG--AC---CTTTCG--GGCC--ATCCTCCCTAT--TTAAA-TTGTTCAACTGCT--CGACAGGATTGACTT-----GCTGTAATGGCACAACTGTTGACGATGCGCGAGGTGAGCCACCTGCTATATTTATCAAGA--TCTATAGTTASizeHit CountTotal NormTotal
No Reads
droFic1
AT----------CCAAGTCGGCGGTGACGA------CGACCGTAAGTGCACAGGGTGCAGCAAGTGAAATCGAA-------GTCCCATAGAGGGT--------------CGTTTGGTCGTTTGGAGAC------CCTGGCCGAATGAACAA------CCAATTTTTACCGAGTGCT----CTGAGAGCAGCGAT-------------------------------GGGACTCTGAGCACTGAGCACTGAGCAAA--------CTAGCAAACTGGTTGGC------------------GTCGGTGGAGGAACACAGTGTCGCTTGGCAGTGACGTTTATGGGTACTGATACTGATACGGATACGCGTCACGCTGCGATTTG-CCATTGTGT----------------------------CGCATC-----G---CTCTGGCCAATCAGGCGCAG--AC---CTTTCG--GGCC--AACCTCCCTGT--TTAAA-CATTTTTACGGCT--CGACAGGATTGACTG-----GCTGTTATGGCAGAACTGTTGACGATGCGCGAGGTGAGCCACCTGCTATATTTACCAAGATATCTATAGCTASizeHit CountTotal NormTotal
No Reads
droKik1
TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGTTACGGATACCGATACGGATACGGATACGGATACGGGATACAC-GCGATTTGTCCATTGTCT-------------------------CATCGCACTTCGTTGGCTCTCTGGCCAATCAGGCGCAGTGACTGATTTTCTGGGGCCACATCCCCCTTATGTTTAACATT-TTG---TGCTGGCAGCAAGATTGACTT-ACT-TGTGTAATGGCGCAAC--------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----AATGTAATGGCACAACTATTGACGATGCGCGAGGTGAGCCACATGATAAA----------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----AATGTAATGGCACAAATATTGACGATGCGAGAGGTGAGCC--------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCACACGGATACGCGTCTCGTTGCGATTTG-TCATTGTGTAAGGCAAGAAAAGGTGTCTGTTCCGCAACGCAGT-----G---CCTCAGCCAATCAGGCAAAA--AA-CATTTTTT--GGCC--ATCCCACTCAT--TT---------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................ATTTG-TCATTGTGTAAGGC.............................................................................................................................................................................................................1912.0020000000002
..................................................................................................................................................................................................................................................................................................................................................................ACGGATACGCGTCTCGTTGC..................................................................................................................................................................................................................................2011.0010100000000
droPer2
AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCACACGGATACGCGTCTCGTTGCGATTTG-TCATTGTGTAAGGCAAGAAAAGGTGTCTGTTCCGCAACGCAGT-----G---CCTCAGCCAATCAGGCAAAA--AA-CATTTTTT--GGCC--ATCCCACTCAT--TT---------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................CGATTTG-TCATTGTGTAAGGC.............................................................................................................................................................................................................2111.001000001
droVir3
GC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGACGTTAAAAGTTTAATAAATAAATGAATC--CCCATGG---SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads

Generated: 05/19/2015 at 02:34 AM