ID:

dsi_25053

 Coordinate:

3l:7207621-7207692 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-9.1 -8.9 -8.8 -8.8

Flybase annnotation

CDS [3l_7207203_7207620_-]; exon [3l_7207146_7207620_-]; CDS [3l_7207693_7207757_-]; exon [3l_7207693_7207860_-]; intron [3l_7207621_7207692_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------##################################################
CCCATGCTAAAACACTGGGACCCCAGCATGAAGCACAACGATATGGAGCGGTAGGGACCAGGCACTGGCCAGCAAAACACAAAGTTCGATCCCACATGTAACTCTTATTGTTGTTAACACAGATGGATTTGCGTATATCCCGCCTACATCAATAGGAAAAAGACCCGCCAGG
**************************************************..............(((........((((...((((..((.....))..)))).....)))).......)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 SRR902009
testis
 M024
male body		 M023
head
............................TGAAGCACAACGATATGGAGCGATGGA..................................................................................................................... 27 3 1 6.00 6 3 3 0 0 0 0 0 0 0
............................TGAAGCACAACGATATGGAGCGATGG...................................................................................................................... 26 2 1 2.00 2 0 1 0 1 0 0 0 0 0
...............TGGGACCCCAGCATGAAGCACAACGAT.................................................................................................................................. 27 0 1 2.00 2 1 0 0 0 1 0 0 0 0
...ATGCTAAAACACTGGGACCCCAGCAA............................................................................................................................................... 26 1 1 1.00 1 0 0 0 0 0 0 1 0 0
...............................AGCACAACGATATGGAGCGATGGA..................................................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................GTTAACACAGATGGATTTGCG....................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................TGTGCGTATATCCCGCCTACATCAAT................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................................TATGGAGCGGTAGGGACCACT.............................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................TATCCCGCCTACATCAATAGGAAAAAGA......... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........................AGCATGAAGCACAACGATATGGAGCGA......................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...............TGGGACCCCAGCATGAAGCACAACGA................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0
....TGCTAAAACACTGGGACCCCAGCATGA............................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................CGTATATCCCGCCTACATCA..................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...............................................................................CAAAGTTCGATCCCACATGTA........................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................TGGAGCGGTAGGGACCAGGCACTGGC....................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................AGTTCGATCCCACATGTAACT..................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.CCATGCTAGAACGCGGGGA........................................................................................................................................................ 19 3 2 0.50 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................GATGGATTTGAGTATATTC................................ 19 2 3 0.33 1 0 0 0 0 0 0 0 1 0
...............................................................................................................TGTTAACACAGGTGGAC............................................ 17 2 8 0.13 1 1 0 0 0 0 0 0 0 0
........................................................................................................................AGATGGATTTCCGTA..................................... 15 1 8 0.13 1 0 1 0 0 0 0 0 0 0
................................................CGGCAGAGACGAGGCACTGG........................................................................................................ 20 3 9 0.11 1 1 0 0 0 0 0 0 0 0
..................................................................................AGTTCGATCCCCCACG.......................................................................... 16 2 13 0.08 1 1 0 0 0 0 0 0 0 0
........................................ATAGGGAGCCGTAGGG.................................................................................................................... 16 2 18 0.06 1 0 0 0 0 1 0 0 0 0
...................................................................................................................................................ATCAATACGAAAAAGA......... 16 1 20 0.05 1 1 0 0 0 0 0 0 0 0
.CCATGCTAGAACACGGTG......................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GGGTACGATTTTGTGACCCTGGGGTCGTACTTCGTGTTGCTATACCTCGCCATCCCTGGTCCGTGACCGGTCGTTTTGTGTTTCAAGCTAGGGTGTACATTGAGAATAACAACAATTGTGTCTACCTAAACGCATATAGGGCGGATGTAGTTATCCTTTTTCTGGGCGGTCC
**************************************************..............(((........((((...((((..((.....))..)))).....)))).......)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR902009
testis
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
......................................................................................................................................TATAGGGCGGATGTAGTTATC................. 21 0 1 1.00 1 0 0 1 0 0 0 0
.....................GGGTCGTACTTCGTGTTGCTA.................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0
........................TCGTACTTCGTGTTGCTA.................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0
.............................CTTCGTGTTGCTATACCTCG........................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0
.................................................................................TTCAAGCTAGGGTGTACATTG...................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................CTTATAGGGAGGATGTAG...................... 18 2 4 0.25 1 0 0 0 0 1 0 0
........................................................................................................................................TAGTGCCGATGTAGTTA................... 17 2 7 0.14 1 0 1 0 0 0 0 0
.................................................................................................................................ACGCAGATAGGGCTGA........................... 16 2 20 0.10 2 0 2 0 0 0 0 0
..................................................................................TCAAGCCAGGATGTAC.......................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1
....................................................................................AGGCTATGGTGGACATTG...................................................................... 18 3 20 0.05 1 0 0 0 0 0 1 0

Generated: 04/23/2015 at 08:38 PM