ID:

dsi_25048

 Coordinate:

3r:15780633-15781073 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.8

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

CGGAAAAACGTAAAAGGCAAAGGCGGATGAAGCAGCGCAAAAGGGGAAGCGTAAGCAGGCGCTAAATATTTAAAAAATATATATTAAAAACTTTGCGCTTCGCTTCGGTAACATATGTATGTAAATCTAATCAGAGTGTGCCTGTGTGTGTAATTGTTCAAAATATAACCGCGAGCAACAACAACAACAACAAGAAAAGCAGCTGAGCCCGAAAAGTAAAAACCCACAATAAAGTCCCAGAATCAATTCAGGATCCACTACAAGAACAACAACAGCAAAAACCACTGTCGCGTCTCCAAATGAAACAATAATTGAATAATTGAATTACCCAATATAACGAAGAAAAAAGCAAAGGAAAGCGAATAACGAGTAAAAGTTAAAAAGTTGAAAAAGTTTAAAACATATTGTAAAGCCGTACTGCGTAAGCCAGTCAGCGCTTAAAGTACCATATATAGTTGTTCTTATCTATACCCACACTCAATTAATTGCAGCTGAATGCACGACTCCTTGCAGAAAGGTGAATATATTTCAAACTAGTCAT
***********************************************************************************************************************************************************************************************************************..................((((..(((....))).)))).......................************************************************************************************************************************************************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 M024
male body		 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
.........GTAAAAGGCAAAGGCGGATGAAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GTAAAAACCCACAATAAAGTCCCAGA............................................................................................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................CCACTACAAGAACAACAACAGCA........................................................................................................................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................AAATCTAATCAGAGTGTGCCTGTGTGT........................................................................................................................................................................................................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTGCAGCTGAATGCACGACTCC.................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................CAACAACAGCAAAAACCACT............................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................AAAAACTTTGCGCTTCGCTTCGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGTAAAGCCGTACTGCGTAAGCC................................................................................................................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GTGCCTGTGTGTGTAATTGTTCAAAAT......................................................................................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................................................................TAAAACATATTGTAAAGCCGT............................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAACATATTGTAAAGCCGTAC........................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTGCAGCTGAATGCACGACTCCT................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGTACTGCGTAAGCCAGTCAGCGCTT...................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AACTTTGCGCTTCGCTTCGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................ACCCACAATAAAGTCC................................................................................................................................................................................................................................................................................................................ 16 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGTAAAGCCGTACTGCGTAA.................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGCCGTACTGCGTA..................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................ATCTAATCAGAGTGTGCCTGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................TAATCAGAGTGTGCCTGTGTGTGTAATT.................................................................................................................................................................................................................................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACGACTCCTTGCAGAAAGAAGGA................... 26 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACGACTCCTTGCAGAAAGAAGG.................... 25 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................................AAAGTTAAAATGTTAACAAAGTTTA................................................................................................................................................ 25 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGTCAGCGCTTAAAGTACCATAT.......................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACGACTCCTTGCAGAAAGAAGGAT.................. 26 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAATTAATTGCAGCTGAATGCAC........................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............AAAGGCAAAGGCGGATGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................CCCAGAATCAATTCAGGATCCACTACA....................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................AGAAAAGCAGCTGAGCCC........................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........GTAAAAGGCAAAGGCGGATGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTGCAGCTGAATGCACGA...................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................AAACTTTGCGCTTCGCTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................AGCGCAAAAGGGGAAGCGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................AAAGGAAAGCGAATAACGA............................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................GTATGTAAATCTAATCAGAGTGTGCC............................................................................................................................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAATATATTTCAA......... 16 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAATATATTTCAATGTAGA... 22 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................GAAATCTAATTAGAGTGTGCGT.............................................................................................................................................................................................................................................................................................................................................................................................................. 22 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................AGAGTCAATTCAGGA................................................................................................................................................................................................................................................................................................ 15 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AACAAAAAAAGCGGCTGCGCC............................................................................................................................................................................................................................................................................................................................................ 21 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................AAAAAAGCAAAGGAAA....................................................................................................................................................................................... 16 0 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................AGAGAATCAATTCAGG................................................................................................................................................................................................................................................................................................. 16 2 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................GGTATGCGAATAACGAG........................................................................................................................................................................... 17 2 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGGACTACTTGCAGAAA......................... 20 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................................................................................................................................................................................................................TAAACCCGTACGGCGCAA.................................................................................................................... 18 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................................................AATACAGTCCGAGGATCAA....................................................................................................................................................................................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................TGTGTGTGTGATTGTTAAAA........................................................................................................................................................................................................................................................................................................................................................................................... 20 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................CAAAAACATCAAGAAAAGC..................................................................................................................................................................................................................................................................................................................................................... 19 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................GAGGATGCGTAAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GCCTTTTTGCATTTTCCGTTTCCGCCTACTTCGTCGCGTTTTCCCCTTCGCATTCGTCCGCGATTTATAAATTTTTTATATATAATTTTTGAAACGCGAAGCGAAGCCATTGTATACATACATTTAGATTAGTCTCACACGGACACACACATTAACAAGTTTTATATTGGCGCTCGTTGTTGTTGTTGTTGTTCTTTTCGTCGACTCGGGCTTTTCATTTTTGGGTGTTATTTCAGGGTCTTAGTTAAGTCCTAGGTGATGTTCTTGTTGTTGTCGTTTTTGGTGACAGCGCAGAGGTTTACTTTGTTATTAACTTATTAACTTAATGGGTTATATTGCTTCTTTTTTCGTTTCCTTTCGCTTATTGCTCATTTTCAATTTTTCAACTTTTTCAAATTTTGTATAACATTTCGGCATGACGCATTCGGTCAGTCGCGAATTTCATGGTATATATCAACAAGAATAGATATGGGTGTGAGTTAATTAACGTCGACTTACGTGCTGAGGAACGTCTTTCCACTTATATAAAGTTTGATCAGTA
************************************************************************************************************************************************************************************************************************************************************************..................((((..(((....))).)))).......................*********************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 O002
Head
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 M025
embryo
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
.....................................................................................................................................................................................................................................................................TTCTTGTTGTTGTCGCTTTTCGT................................................................................................................................................................................................................................................................. 23 2 2 2.50 5 0 5 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................TCTTGTTGTTGTCGCTTTTCGT................................................................................................................................................................................................................................................................. 22 2 2 1.50 3 0 3 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TCGTCGACTCGGGCTTTTC..................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GTTATTTCAGGGTGTTAGCTGA..................................................................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................TCAGGGTCTTAGTTAAGTCCT................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................TCAGGGTCTTAGTTAAGTCCTA............................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................TTATTGCTTCTTTTTTCGTTT............................................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................................................TTAGTTAAGTCCTAGGTGATG........................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................CTTCGTCGCGTTTTCCCCTTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTCGCAAGTTTCATGGTA............................................................................................ 20 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TTCATTTTTGGGTGTTATTTC................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................................................................................CATGACGCATTCGGTCAGT............................................................................................................ 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................................................................AACATTTCGGCATGACGCATT.................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................TGTTCTTGTTGTTGTCGTTTT..................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................................TCGCTTGTTGCTCGTTTTCAA................................................................................................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCGGTCAGTCGCGAATTT................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................................TCATTTTCAATTTGACAACTTTGT..................................................................................................................................................... 24 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................................TCATTTTCAATTTTTCAATTTT....................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................ACGGACACACACATTAAC................................................................................................................................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TTATTTCAGGGTCTTAGTTAA..................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TTATTTCAAGGTCTTGTTTAAGT................................................................................................................................................................................................................................................................................................... 23 3 4 0.50 2 0 2 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................CTGGTTGTTGTTGTTGTTGTTCT.......................................................................................................................................................................................................................................................................................................................................................... 23 1 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................AAGCGAAGTTATTGGATACATA..................................................................................................................................................................................................................................................................................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................ACGTCTAAATTTTTTATATATAATTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTCGCAAGTTTCATGGTAC........................................................................................... 21 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................TTGCTTCTTCTTCCGTTTCCGT........................................................................................................................................................................................ 22 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................ATCTCAAGGGGTTATATTGC.......................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................AAGCGAAGTTATTGGATACA....................................................................................................................................................................................................................................................................................................................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCGAATTTTTTATAACATT................................................................................................................................... 23 3 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................AGCGAAGTTATTGGATACA....................................................................................................................................................................................................................................................................................................................................................................................................................................... 19 3 18 0.11 2 0 0 0 0 0 2 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................................CCGCTTGTTGCTCGTTTTCAA................................................................................................................................................................... 21 3 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................CTTTTTGGGGAGAGCGCAG....................................................................................................................................................................................................................................................... 19 3 14 0.07 1 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................CGTTGTTGTTGTTGTTGTTC........................................................................................................................................................................................................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................CAGAGCCATTGTATACGT...................................................................................................................................................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................................TCAGTTTTGGGTATTAT...................................................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................CAAGTTTTATATAGGCA................................................................................................................................................................................................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
....................................................................................................................................................................................................................................................................................................AGAGGTTTACATTGTTT........................................................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................CGTTGTTGTTGTTGTTGT............................................................................................................................................................................................................................................................................................................................................................. 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:15780583-15781123 - dsi_25048 -CGGAAAAACGTAA-AAGGCAAAGGC-GGATGAA-----GCA--------------------------------------------------GCGCAAAAGGGGAAGC-----GTAAGCAGGC--GCTAAA---T--------ATTT---------AAAAAA------TATATA----TT--AAAAACTTTGCGCTTCGCT--------------------------------------------------TCGGTA-----------------------------------A-CAT-ATGTATGTAAATCTAATC-AGAGTGTGCC---------------TGTGTGTG-------------TAATTGTTC--AAAATATAACCG------CG-------------------------------------AGCAACAACAACA---ACAACAA---------------GAAAAGCAGCTGAG-------------------CCCGAAAAGTAAAA--A-CCCACA--ATAA--------AGTCCCAGAATC-A-------ATTCAGGATCCACTACAA---------GAACAACAACA----------GCAAAAACCACTGTCGCGTCTCCAAA-----TGAAACAATAATTGAA-TAAT-TGAAT-------------------------------------------TACCCAA--------------------------TA----TAACGAAG-AAA---AA---------------AGC--AA-AGG-AAAGCGAATA----ACGAGTAA--A------------------A-GTTAAAAAGTTGAAAAAGTTTAAA-AC-----------------------------AT------------------------ATT-GTAAAGCCG--TACTG---------CGTAAGCCAGT---------------------------CAGCGCTT-AAAGTAC-------------------------CATA-TATAGTTGTTCTTAT------CTATA--CCCACACTCAA----TTAATTGCAGCTGAATGCACGACTCCTTGCAGAAAGGTGAATATATTTC-AAACTAGTC-------AT
droSec2 scaffold_0:16649809-16650342 - -CGGAAAAACGTAA-AAGGCAAAGGC-GGATGAA-----GCA--------------------------------------------------GCGCAAAAGGGGAAGC-----GTAAGCAGGC--GCTAAA---T--------ATTT---------TAAAAA------TATATA----TT--AAAAACTTTGCGCTTCGCT--------------------------------------------------TCGGTA-----------------------------------A-CAT-ATGTATGTAAATCTAATC-AGAGTGTGCC---------------TGTGTGTG-------------TAATTGTTC--AAAATAAAACCT------CG-------------------------------------AGCAACAACAACA---AGA---A------------------AAGCAGCTGAG-------------------CCCGAAAAGTAAAA--A-CCCACA--ATAA--------AGTCCCAGAATC-A-------ATTCAGGATCCACTACAA---------GAACAACAACA----------GCAAAAACCACTGTCGCGTCTCCAAA-----TGAAACAATAATTGAA-TAAT-TGAAT-------------------------------------------TACCCAA---------------------------A----TAACGAAG-AAA---AA---------------AGC--AA-AGG-AAAGCGAATA----ACGAGTAA--A------------------A-GTTAAAAAGTTGAAAAAGTTTAAA-AC-----------------------------AT------------------------ATT-GTAAAGCCG--TACTG---------CGTAAGCCAGT---------------------------CAGCGCTT-AAAGTAC-------------------------CATA-TATAGTTCTTCTTAT------CTATA--CCCACACTCAA----TTAATTGCAGCTGAATGCACGACTCCTTGCAGAAAGGTGAATATATTTC-AAACTAGTC-------AT
dm3 chr3R:5245291-5245793 + -CGGAAAAACGTAA-AAAGCAAAGGC-GGATGAA-----GCA--------------------------------------------------GTGCAAAAGGGAAGGC-----GTAAGCAGGC--GCTAAA---T--------ATTT---------TGAAAA------TATATA----TT--AAAAACTTTGCGCTTCGCT--------------------------------------------------TCGGTA-----------------------------------A-CAT-A----------------------TGTG-----------------TGTGTGTG-------------TAATTGTTC--TAAATTAAACCG------CG-------------------------------------AGCAACAACAGCA---ACAACAG------------------AAGCAGCTGAG-------------------CCCGAAAAGTAAAA------------------------AGTCCC-AAAATAA-------ATTCAGGATCCACTACAA---------CAACAACTACA----------GCAAAAACCACTGTCGCGTCTCGAAA-----TGAAACAATAATTGAA-TAAT-TGAAT-------------------------------------------TACCCAA---------------------------A----TAACGAAG-AAA---AA---------------AGC--AA-AGG-AAAGCGCATA----ACGAGTAA--A------------------A-GTTAAAAAGTCAAAAAAGTTTAAA-AC-----------------------------AT------------------------ATT-GTAAAGCCG--TACTG---------CGTAAGCCAGT---------------------------CAGCGCTT-AAAGTAC-------------------------CATA-TATAGGTGTTCTTAT------CTATA--CCCACACTCAA----TTAATTGCAGCTGAATGCACGACTCCTTGCAGAAAGGTGAATATATTTC-AAACTAGTC-------AT
droEre2 scaffold_4770:16357890-16358444 - -CGGAAAAACGGAA-AAGGCAAAGGC-GGATGAA-----GCA--------------------------------------------------GCGCAAAAGGGGAAGC-----GTAAGCAGGC--GCTAAA---T--------ATTT---------TTAAAA------TATATACATATA--AAGAACTTTGCGCTTCGCT--------------------------------------------------TCGGTA-----------------------------------A-TAT-TT------------------GTATGTGCC---------------TGTGTGTG-------------TAATTGTTA--TAAATAAAAACG------CC-------------------------------------AGCAACAACAACA---ACAACAACAGCAGCAACAGCAACAAAAGCAGCTGAG-------------------CCCGAAATGTAAAA--AACCCACA--ATAA--------ATTAACAGAATC-A-------ATTCAGGATCCACTACAACAACAACAACAACAACAACA----------GCAAAAACCACTGTCGCGTCTCCAAA-----TGAAACAATAATTGAA-TAAT-TGAAT-------------------------------------------TACGCAA---------------------------A----TAACGAAG-AAA----A---------------AGC--AAAAGGAAAAGCGAAAA----ACGAGTAA--A------------------A-ATTAAAAAGT-AATCAAGTTTAAA-AC-----------------------------TA------------------------ATTCGTAAAGCTGTGTGCTG---------CGTAAGCCAGT---------------------------CAGCGCTT-AAAGTAC-------------------------CATA-TATAGTTGTTCTTAT------CTATA--CCCACACTCAA----TTAATTGCAGCTGAATGCACGACTCCTTGCAGAAAGGTGAATATATTTC-AAACTAGTC-------AT
droYak3 3R:9292400-9292931 + -CGGAAAAACGGAA-AAGGCAAAGGC-GGATGAA-----GCA--------------------------------------------------GCGCAAAAGGGGAAGC-----CAAAGCAGGC--GCTAAA---T--------ATTT---------TCAAAA------TATATA----TTT-AAAAACTTTGCGCTTCGCT--------------------------------------------------TCGGTA-----------------------------------A-TAT-TTGTATGCAAATCTAATC-AGAGTGTGCC---------------TGTGTGTG-------------TAATTGTTA--TAAATCAAAACG------AG-------------------------------------AGCAACAACAGCA---ACAACAA------------------TAGCAGCTTAG-------------------CCCGAAAAGTAAAA--A-ACCACA--TTAA--------AGTAACAGAATT-A-------ATTCAGGATCCACTA------------------CAACA----------GCAAAAACCACTGTCGCGTCTCCAAA-----TGAAACAATAATTGAA-TAAT-TGAAT-------------------------------------------TACGCAA---------------------------A----TAACTAAG-AAAA--AA---------------ATC--AA-AGGAAAAGCGAATA----ACGAGTAA--A------------------AAGT--AAAAGT-AAAAAAGTTTAAA-AC-----------------------------AA------------------------ATTCGTAAAGCCGTGTACTG---------AGTAAGCCAGT---------------------------CAGCGCTT-AAAGTAC-------------------------CATA-TATAGTTGTTCTTAT------CTATA--CCCACACTCAA----TTAATTGCAGCTGAATGCACGACTCCTTGCAGAAAGGTGAATATATTTC-AAACTAGTC-------AT
droEug1 scf7180000407136:454225-454790 - -CGGAAAAACGGAT-AAGGCAAAGGC-GGATGAA-----GCA--------------------------------------------------GCGCAAAAGG-AAGGC-----GTAAGCAGGC--GCTATA---A--------ATTAACAAAAAAATAAAAATAAATTTACATA----TAAAAAAAACTTTGCGCTTAGCT--------------------------------------------------TCG--------------------------AAATTCGCGGAAG-TAAT---------AATCTAATC-AGAGTGTGCC---------------TGTGTGTA-------------T--TTGTTT--AAAA----AACC------CA-------------------------------------AGCAGCAGCAGCA---GCAACAACAGCAACAACAACAGCAAAAGCAGCAGAACAA------------------CAAAAAGTAAAGAAA-CCCGTT--ATAAATA--AAAAACCCC-TAATCAA-------ATTCAGGATCCACTACAA------------CAACAACA----------ACAAAAACCACTGTCGCGTCTCCAAA-----TGAAACAATAATTGAA-TAAT-TGAAT-------------------------------------------TATCCA----------------------------A----TAACGAAA-TTAAAGAA---------------ATC------------------AACG-ACGAGTATAAAAA-G--TTGAAAAAC--------------------------AAA-AC-----------------------------AA------------------------A-----------------TA---------AGTAAGCCAGTCG-AGGAGATAT--ATAGCCGCAAAATCAGCGTTT-AAAATAC-------------------------CATA-TATAGTTGTTCTTAT------CTATA--CCCACACTCAA----TTAATTGCAGCTGAATGCACGACTCCTTGCAGAAAGGTGAATATATTTCAAAACTAGTC-------AT
droBia1 scf7180000302402:7980649-7981139 + -CGGAAAAACGGAA-AAGGCAAAGGC-GGATGAA-----GCA--------------------------------------------------GCGCAAGGGGAGAGGC-----GTAAGCAGGC--GCTAAAA--A--------ATTT---------TTAAAA------TATATT--TCTT--AGAAACTTTGCGCTCAGCT--------------------------------------------------TCC--------------------------A-ACTCGCGGAAAATTTC---------GATCTAATC-GGAGAGTGCC---------------TGTGTGTG-------------T--TTGTTT--AA------AAGC------CA-------------------------------------AGCAACAACAACA---ACA---A------------------AAGCAGCAGAACAACAAA--------A---------------------ACCATA--ATCA-------AAACACC-TAACCGA-------ATCCAGGATCCACTACAA---------------CAACA----------ACAACAACCACTGTCGCGTCTCCAAA-----TGAAACAATAATTGAA-TAAT-TGAAA-------------------------------------------TACCCA----------------------------A----TAAAGAAG-AA---------------------------------------AATA----ACGAGTAA--AAA-----------------------------------GTTTAAGCAA--------------------------------------------------------------------------A---------AGTAAGCCAGTCG-AGGAGATAT-TGTATCCGCACA-TCAGCGTTT-AAAGTAC-------------------------CATA-CATAGTTGTTCTTAT------CTATA--CCCACACTCAA----TTAATTGCAGCTGAATGCACGACTCCTTGCAAAAAGGTGAATATATTTC-AAACTAGTC-------AT
droTak1 scf7180000415811:296432-296942 - -CGGAAAAACGGAA-AAGGCAAAGGC-GGATGAA-----GCA--------------------------------------------------GCGCAA-AGGAGAGGC-----GTAAGCAGGC--GCTAAAAAAT--------ATTT---------T-AAAA--------TATA----TCA-AAAAACATTGCGCTTGGCT--------------------------------------------------TCG--------------------------AAATTCGCGAAAT-AAAT---------AATCTAATC-AGAGTGTGAC---------------TGTGTGTGT--------G---T--TTGTTT--AA------AACC------CA-------------------------------------AGCAACAACAACA---ACA---A------------------AAGCAGCAGAACAACAAA--------AA--CCCAAAA-----------ACCATA--ATAA------AAAACCCC-TAATCAA-------ATTCAGGATCCACTACAA---------------CAACA----------ACAAAAACCACTGTCGCGTCTCCAAA-----TGAAACAATAATTGAA-TAAT-TGAAT-------------------------------------------TACCCA----------------------------A----TAAAGAAA-A------------------------CAAAA-AGC-AAAGCGAATA----ACGGGTTG--AAA-----------------------------------GTTTAAA-AA--------------------------------------------------------------------------A---------AGTAAGCCAGTCG-AGGAGATAT-TATATCCGCACA-TCAGCGTTT-AAAGTAC-------------------------CATA-TATAGTTGTTCTTAT------CTATA--CCCACACTCAA----TTAATTGCAGCTGAATGCACGACTCCTTGCAGAAAGGTGAATATATTTC-AAACTAGTC-------AT
droEle1 scf7180000491194:414301-414850 + -CGGAAAAACGGAAAAAGGCAAAGGC-GGACGAA-----GCA--------------------------------------------------GCGCCAAAGGAGAGGC-----GTAAGCAAGC--GCTAAA---A--------ATTA---------AAAAAA-----GTATATA----TTAAAAAAACTTAGCGCTAGGCT--------------------------------------------------TCG--------------------------AAATTCGCGGAAA-TAAT---------AATCAAATTAAGAGTGTGCC---------------TGTGTGTGT--------G---T--CTGTTT--AA------AGCC------GA-------------------------------------AGCAACAACAACA---ACA----------------------AAGCAGTAGCACAACAAC--AATTAAAACATCCAAAAAGTATAAATA-CCTATA--TTAAATA----AAACCCC-TAATCAA-------ATGCAGGATCCTCTACCA------------CAACAACA----------ACAAAAACAACTGTCGCGTCTCCTAA-----TGAAACAATAATTGAA-TAAT-TGAAT-------------------------------------------TAACCA----------------------------A----TAACGAAA-AATAAGAAAAACAAGAAAAGCAAAGC--AA-AGC-AAAACGAATA----ACGAGTAA--A------------------A----------------------------------------------------------------------------------------------------------------AGTAAGCCTGTCG-AGGAGATATATATATCTGCACA-TCAGCGTTT-AAAGTAC-------------------------CATA-AATAGTTGTTCTTAT------CTATA--CCCACACTCAA----TTAATTGCAGCCGAATGCACGACTCCTTGCAGAAAGGTGAATATATTTC-AAACTAGTC-------AT
droRho1 scf7180000779488:462850-463352 + -CGGAAAAACGGAAAAAGGCAAAGGC-GGATGAA-----GCA--------------------------------------------------GCACAAAAAGAGAGGC-----GTAAGCAAGC--GCTAAA---T--------TTTA---------AAAAAA----ATTATATA----TAA-AAAAACTAAGCGCTAAGCC--------------------------------------------------TCC--------------------------AGATTCGCGGAAA-TATT---------AATCTAATCTAGAGTGTGCC---------------TGTGTGTGT--------G---T--TTGTTT--AA------AATC------CA-------------------------------------AGCAACAACAACA---ACA----------------------AATCAGCAGAACAACACA--------AA----C--AAAGTATAA--A-TCCATT--ATAAAAA----AAACCCC-TCATCAA-------ATGCAGGATCCATTACCA---------------CAACA----------ACAAAAACAACTGTCGCGTCTCCAAA-----TGAAACAATAATTGAA-TAATATAAAT-------------------------------------------TAACCA----------------------------A----TAACGAAA-AATAA-AAA--------------AAC---A-AGC-AAAGCGAATA----ACGAGTAA--AAA------------------GTTAA------------------------------------------------------------------------------------------------A---------AGTAAGCCTGTCG-AGGAGA-----------------------TTT-AAAGTAC-------------------------CATA-TATAGTTCTTCTTAT------CTATA--CCCACACTCAA----TTAATTGCAGCTGAATGCACGACTCCTTGCAGAAAGGTGAATATATTTC-AAACTAGTC-------AT
droFic1 scf7180000454106:1944538-1945062 - -CGGAAAAACGGAAAAAGGCA-AGGC-GGATGAA-----GCA--------------------------------------------------GCGCGA-AGGAGAGGC-----GTAATCAAAC--GCTAAAATAT--------ATTT---------T-AAAA------TTTAT----------AAAACACTGCGCTAGGCT--------------------------------------------------TCGG--------------------------AATTCGCGAAT--AAAT---------TATCTAATC-GGAGTGTGAT---------------TGTGTGTG-------------T--TTGTTTCCAAGAAAAAAACC------CA-------------------------------------AGCAACAACAACA---ACA----------------------AAGCAGCAGAACAAAA----------AA--CCCAAAAAGTAAAA--A-CCCATT--ATAA------AAATCGCC-TAATCAA-------ATGCAGGATCCACTACAA---------------CAACA----------ACAAAAACAACTGTCGCGTCTCCAAA-----TGAAACAATAATTGAA-TAAT-TGAAT-------------------------------------------TAACCA----------------------------A----TAACGAAA-AAG---AA---------------ATA--TA-AGC-AAAGCGAATA----ACGAGTAA--AAA------------------GTT--------G---------AA---------------------------------------------------------------------TCG--TACTA---------AGTAAGCCAGTCG-AGGAGATAT--ATATCCGCAAA-TCAGCGTTT-AAAGTAC-------------------------CATA-TATAGTTGTTCTTAT------CTATA--CCCACACTCAA----TTAATTGCAGCTGAATGCACGACTCCTTGCAAAAAGGTGAATATATTTC-AAACTAGTC-------AT
droKik1 scf7180000302388:1841042-1841636 - -CGGAAAAACGCCAAAACGCAACAGC-GGATGAA-----GCAGGGGA----------------------------------------------AGCAGAGAG-AGAGA-----GATAGCAGGGCCACTGAA---A--------AT-------------------------------------------TAAGCGCTAAGCTGA----AGTAAGCCAAAAACAC----------------------------TCGGTATCG--------------------ATATT-GTGTTG--AAAT---------TAGCTTGTG-CCAGTGTGCCCAATGTCTACGAAAGTGTATGTGC--------G---T--TTGTTTTTA-TAT---A--ACCAA--CA------------------ACAATAAATCTGCGACACCAGCAACAACAACA---ACA----------------------ACTCAGCAAA-CA----AACAACAAAAGCAACCAAAATATAAAA--A--CTATA--ACAA--------A-AGCC-TAATCAA-------TCGCAGGAACTTCGATCA--AAATAATCAACAACAACAA---------ACAAAAGCAACTGTCGCGTCTCTAAT-----TGAAACAATAATTGAAATA---------CCCAGAAT-ATATAAAGT-------------------TAGATTAA--------------------------------------ACGAGT-AAA---AA---------------A-------ATA-AAAGCTAATA----ACGAATAA--G------------------AAGT-----------------------------------------------------------------------------------------ACCGTGTACTGAGCGTACTGAG------AGT-A-AGGAGATA---ATATCCGCACA-TCAGCGTTTAAAAGTAC-------------------------CATA-CCTAGTTGATCTTAT------CTGTA--G-----CTCAA----TTAATTGCAGCTGAATGCACGACTCCTTGCAAAAAGGTGAATATATTTC-AAACTAGTCATAAGAATT
droAna3 scaffold_13340:4800784-4800858 - -CGGAAAAACGGAA--AAGCAACAGC-GAACAG--CAAGGCAGGCGCA--------------------------------------------TAGAAGGGGGCGAGGTGGTTAGCAAGCAGGG--GC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396359:389148-389743 + -CGGAAAAACGGAA-A-AGCAACAGC-GAAC-AAGCATTGCAGGCGCA--------------------------------------------TAGCAGGGGGCGAGG-------ATAGCAGGGGCG-T-------CTAAGCAAATT--------GGCCC----------------------------------GTTTAGGTGCTGCTACTAATTCGAAAACTCATCATCATCATCATCATAGTCGTCGTTGTCGTCGTCGATAGTTTTTCGCTAGAATTAACCTTCGCGGCA--------------------AATT-AGTGCGTATT---------------TGTGTGTGTGTCTGTGCTTGTT--TTGTTTTTA-TAT---A--ACCAATCCACACAAAAGCTTA-AAACTA------ATCTGT------ATCAACAATAGCA---ACAACCA-------------------GG---CCAAATCAAAA---------------C--AGAACATAA--A-ACCAG---ATAAAAACAAC-AAT--C-TATATAAACTTGAATCGCAGGA---------G---------------TAACA----------ACAAAAACAACTGTCGCGTCACTGAA-----TGAAACAATAATTGAA-TAAT-TGCAT-------------------------------------------TAAAAAT---------------------------ACAAATAA----A-AGTA--AA---------------AAA--AA-ACG-AAAACGAAAA----ACAAG---------------------------------------------------------------------------------------------------------------------------TACTG---------AGTAAGCAAGTCA-AGGAGACA---------------CTAGCGTTC-AAAGTAC-------------------------CCCACTAAAGCTGTTCTC-----TATCTCCA-CCCCACACTCAA----ATAATTGCAGCTGAATGCACGACTCCTTGCAGAAAGGTGAATATATTTA-AAACTAGTC-------CT
dp5 2:3175228-3175489 - ACAGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAACA----------ACAAAAGCAACTGTCGCGTCAC-ATA-----TAAAACAATAATTGAA-TAAT-TGAAT--------------------------------------------ACC------------------------------A----TAACAAAT-AAT--------------------------------------AATAACGTACGAGTACATAT-TGTATTGTAAAGTAAA-------------------------G-TAAAGTAAGCCCAGCATA----------------------------------------------------------------------------------AAGCG------ATATCCACATA--AAGCGTATCCAAGTAC-------------------------CATA-TATAGTCGTTCTTAT--------ATA--GCCACACTCAAA---TTAATTGCAGCTGTATGCACGACTCCTTGCAAAAAGGTGAATATATCTAAAAACTAGAT-------GT
droPer2 scaffold_7:1166391-1166645 + ACAGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAACA----------ACAAAAGCAACTGTCGCGTCAC-ATA-----TAAAACAATAATTGAA-TACC-----------------------------------------------------------------------------------A----TAACAAAATAAT--------------------------------------AATAACGTACGAGTACATAT-TGTATTGTAAAGTAAA-------------------------G-TAAAGTAAGCCCAGCATA----------------------------------------------------------------------------------AAGCG------ATATCCACATA--AAGCGTATCCAAGTAC-------------------------CATA-TATAGTCGTTCTTAT--------ATA--GCCACACTCAAA---TTAATTGCAGCTGTATGCACGACTCCTTGCAAAAAGGTGAATATATCTAAAAACTAGAT-------TT
droWil2 scf2_1100000004902:9757019-9757539 - -CAAAAAGTAATAA-AAAGCAAAAAATAAATAG--CAAGAAAGTAAAGAAAATTCAAATAATAAAATTAATCAGAATAAAAAGCAATAAGCAAAGCAAAAGAAATAG------ATAAACGAGA--AAT-------TTAA-CAAAAA--------TTTCT----------------------------------GTAT-----------------------------------------------------------------------------------------------A-TGT-T--------TATGTGTA--CGTGTGTGTG---------------TGTGTGTGT--------G---T--ATATTT--TATAT-----AA------CA-------------------------------------AGTGACAACAACAACAAC---AATTGCAACAA---------TAGCAACATTG-------------------GCAAAAGT---------------------------------------------------------GTTCAACAA------------------CAACAAAATAGAAGAACAAAATCCA-------ATTTACAAA-----ATCAACA-------------------------------------------------------------------------------------------------------AA-------------------------------CAAAA-AAT-AAAACAAAT-----------TA----------------------------------------ATTTAAT-TA----------------AACGAGACCAAACTTACATATATCACACTATATACATACATACATACATACATATACTGATATTAATATGTATGTATGTATATAGATACA---------------TATATGTAT-GTAGTTG-------------------------G-----TTACTTGATCTTATCTATATAATCT-ATCCACACTCAAATTAATAATTGCAGCTGTATGCACGACTCCTTGCAGAAAGGTGAATATTAATTTAAACTAGAA-------AT
droVir3 scaffold_13047:665098-665484 + -AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTT---------------TGTGTATT-------------T---TGTGTTTA-CAT---A--ACTCGTCTTAAAGCAAACGAAGCAACTAAAA--------T------AACGACAACAACA---------A------------------CAACAACTGAATAAAAAA--------AG--AAGAAAA-----------AATAAACGAGAAG-------AGT--A-TCAACAAA------TTTGAGAA--AGCAGCAG---------CAATAACAACT----------GAAACAGCCACATTGGAGTGTCGTATGTAATT-----TATAAGAAATAA---------AAGCAGAAT-ATATAATATAATTATACAAAAGTG--TACACGTTAACAACTGAAATCCTAATATATTAAAATACAATA----TAAAGAAT-AC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------AGAACAG-------------------------CATA-TATACTAGTTAA--T------ATAGC--CCCGCACTCAA----TTAATTGCAGCTGTATGCACGACTCCTTGCAGAAAGGTGAATATATTTA-T--GTGAACATAA--AAT
droMoj3 scaffold_6540:4653347-4653443 + -C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA-TATACTAGTACATAA------ATATTGCCCCGCACTCAA----TTAATTGCAGCTGTATGCACGACTCCTTGCAGAAAGGTGAATATATTA--AATGTGAAC-------AT
droGri2 scaffold_14906:5669040-5669395 - -CAAAATAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACAACG------AT-------------------------------------AACAACAACAACA---ACA---A--------------------------GAACAACAAT----------------------------------------A----------------------A-------TAATAATAACAACAGCAA---------CAACAACAACA----------GCAACAGCAACATTGGAGTGTCATATGTAAAT-----GATAAATAATAA---------ATACATAATAATATAA--TAATTATACAGAAGTGTGTTTACATTAACCAA---------------------------T----TAATTAAA------------------------TCC--AA-ATA-AAAGCTAATA----CCATATAT--A------------------T-----------------------------------------------------------------------------------------------------AA---------AGAATACAAGTAC-AACAAATAT-------------------------ATATACCATATATTTAATAATATATATAATATATA-TAAATTAGTACATAT------ATAGC--CCCGCACTCAA----TTAATTGCAGCTGTATGCACGACTCCTTGCAGAAAGGTGAATATATCTA-TATATGTAC-------AT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
-CGGAAAAACGTAA-AAGGCAAAGGC-GGATGAA-----GCA--------------------------------------------------GCGCAAAAGGGGAAGC-----GTAAGCAGGC--GCTAAA---T--------ATTT---------AAAAAA------TATATA----TT--AAAAACTTTGCGCTTCGCT--------------------------------------------------TCGGTA-----------------------------------A-CAT-ATGTATGTAAATCTAATC-AGAGTGTGCC---------------TGTGTGTG-------------TAATTGTTC--AAAATATAACCG------CG-------------------------------------AGCAACAACAACA---ACAACAA---------------GAAAAGCAGCTGAG-------------------CCCGAAAAGTAAAA--A-CCCACA--ATAA--------AGTCCCAGAATC-A-------ATTCAGGATCCACTACAA---------GAACAACAACA----------GCAAAAACCACTGTCGCGTCTCCAAA-----TGAAACAATAATTGAA-TAAT-TGAAT-------------------------------------------TACCCAA--------------------------TA----TAACGAAG-AAA---AA---------------AGC--AA-AGG-AAAGCGAATA----ACGAGTAA--A------------------A-GTTAAAAAGTTGAAAAAGTTTAAA-AC-----------------------------AT------------------------ATT-GTAAAGCCG--TACTG---------CGTAAGCCAGT---------------------------CAGCGCTT-AAAGTAC-------------------------CATA-TATAGTTGTTCTTAT------CTATA--CCCACACTCAA----TTAATTGCAGCTGAATGCACGACTCCTTGCAGAAAGGTGAATATATTTC-AAACTAGTC-------ATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........GTAA-AAGGCAAAGGC-GGATGAA-----GCA--------------------------------------------------GC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAA--A-CCCACA--ATAA--------AGTCCCAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTACAA---------GAACAACAACA----------GCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
..................................................................................................................................................................................................................................................................................................................AAATCTAATC-AGAGTGTGCC---------------TGTGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTGCAGCTGAATGCACGACTCC..........................................2611.00100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACA----------GCAAAAACCACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000100000000000
......................................................................................................................................................................................AAAAACTTTGCGCTTCGCT--------------------------------------------------TCGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GTAAAGCCG--TACTG---------CGTAAGCC...........................................................................................................................................................................................2311.00110000000000000000
..................................................................................................................................................................................................................................................................................................................................GTGCC---------------TGTGTGTG-------------TAATTGTTC--AAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAA-AC-----------------------------AT------------------------ATT-GTAAAGCCG--T................................................................................................................................................................................................................2111.00100000100000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAA-AC-----------------------------AT------------------------ATT-GTAAAGCCG--TAC..............................................................................................................................................................................................................2511.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTGCAGCTGAATGCACGACTCCT.........................................2711.00100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCG--TACTG---------CGTAAGCCAGT---------------------------CAGCGCTT-....................................................................................................................................................2911.00100010000000000000
.........................................................................................................................................................................................AACTTTGCGCTTCGCT--------------------------------------------------TCGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-CCCACA--ATAA--------AGTCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GTAAAGCCG--TACTG---------CGTAA..............................................................................................................................................................................................2011.00100010000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGCCG--TACTG---------CGTA...............................................................................................................................................................................................1811.00100010000000000000
....................................................................................................................................................................................................................................................................................................................ATCTAATC-AGAGTGTGCC---------------TGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
.......................................................................................................................................................................................................................................................................................................................TAATC-AGAGTGTGCC---------------TGTGTGTG-------------TAATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGT---------------------------CAGCGCTT-AAAGTAC-------------------------CATA-T..............................................................................................................2611.00100000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAA----TTAATTGCAGCTGAATGCAC................................................2611.00100010000000000000
.............A-AAGGCAAAGGC-GGATGAA-----G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGAATC-A-------ATTCAGGATCCACTACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------GAAAAGCAGCTGAG-------------------CCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
..........GTAA-AAGGCAAAGGC-GGATGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTGCAGCTGAATGCACGA..............................................2211.00100010000000000000
........................................................................................................................................................................................AAACTTTGCGCTTCGCT--------------------------------------------------T............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
.........................................A--------------------------------------------------GCGCAAAAGGGGAAGC-----GTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-AGG-AAAGCGAATA----ACGA.............................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
............................................................................................................................................................................................................................................................................................................GTATGTAAATCTAATC-AGAGTGTGCC---------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAATATATTTC-AA................1620.50100000000100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA---AA---------------AGC--AA-AGG-AAA............................................................................................................................................................................................................................................................................................................................................................1660.17100000001000000000
droSec2
-CGGAAAAACGTAA-AAGGCAAAGGC-GGATGAA-----GCA--------------------------------------------------GCGCAAAAGGGGAAGC-----GTAAGCAGGC--GCTAAA---T--------ATTT---------TAAAAA------TATATA----TT--AAAAACTTTGCGCTTCGCT--------------------------------------------------TCGGTA-----------------------------------A-CAT-ATGTATGTAAATCTAATC-AGAGTGTGCC---------------TGTGTGTG-------------TAATTGTTC--AAAATAAAACCT------CG-------------------------------------AGCAACAACAACA---AGA---A------------------AAGCAGCTGAG-------------------CCCGAAAAGTAAAA--A-CCCACA--ATAA--------AGTCCCAGAATC-A-------ATTCAGGATCCACTACAA---------GAACAACAACA----------GCAAAAACCACTGTCGCGTCTCCAAA-----TGAAACAATAATTGAA-TAAT-TGAAT-------------------------------------------TACCCAA---------------------------A----TAACGAAG-AAA---AA---------------AGC--AA-AGG-AAAGCGAATA----ACGAGTAA--A------------------A-GTTAAAAAGTTGAAAAAGTTTAAA-AC-----------------------------AT------------------------ATT-GTAAAGCCG--TACTG---------CGTAAGCCAGT---------------------------CAGCGCTT-AAAGTAC-------------------------CATA-TATAGTTCTTCTTAT------CTATA--CCCACACTCAA----TTAATTGCAGCTGAATGCACGACTCCTTGCAGAAAGGTGAATATATTTC-AAACTAGTC-------ATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-------------------------CATA-TATAGTTCTTCTT..................................................................................................1911.0010010
.............A-AAGGCAAAGGC-GGATGAA-----GCA--------------------------------------------------GCGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---------------AGC--AA-AGG-AAAGCGAATA----ACGAGT...........................................................................................................................................................................................................................................................................................................................................2611.0010100
................AGGCAAAGGC-GGATGAA-----GC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA----TTAATTGCAGCTGAAT....................................................1911.0010010
...............AAGGCAAAGGC-GGATGAA-----GCA--------------------------------------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------GCAAAAACCACTGTCGCGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
................................AA-----GCA--------------------------------------------------GCGCAAAAGGGGAAGC-----G......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGCCG--TACTG---------CGTAAGCCAG.........................................................................................................................................................................................2411.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAA--A------------------A-GTTAAAAAGTTGA.....................................................................................................................................................................................................................................................................................................1911.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---AGA---A------------------AAGCAGCTGAG-------------------CCCGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
....AAAAACGTAA-AAGGCAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
......................................................................................................................................................................................................................................................................................................................CTAATC-AGAGTGTGCC---------------TGTGTGTG-------------T............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GTAAAGCCG--TACTG---------CGTAAG.............................................................................................................................................................................................2111.0010100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---AA---------------AGC--AA-AGG-AAAGCGAATA----ACG..............................................................................................................................................................................................................................................................................................................................................2411.0010100
................AGGCAAAGGC-GGATGAA-----GCA--------------------------------------------------GCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
................................AA-----GCA--------------------------------------------------GCGCAAAAGGGGAAGC-----.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
dm3
-CGGAAAAACGTAA-AAAGCAAAGGC-GGATGAA-----GCA--------------------------------------------------GTGCAAAAGGGAAGGC-----GTAAGCAGGC--GCTAAA---T--------ATTT---------TGAAAA------TATATA----TT--AAAAACTTTGCGCTTCGCT--------------------------------------------------TCGGTA-----------------------------------A-CAT-A----------------------TGTG-----------------TGTGTGTG-------------TAATTGTTC--TAAATTAAACCG------CG-------------------------------------AGCAACAACAGCA---ACAACAG------------------AAGCAGCTGAG-------------------CCCGAAAAGTAAAA------------------------AGTCCC-AAAATAA-------ATTCAGGATCCACTACAA---------CAACAACTACA----------GCAAAAACCACTGTCGCGTCTCGAAA-----TGAAACAATAATTGAA-TAAT-TGAAT-------------------------------------------TACCCAA---------------------------A----TAACGAAG-AAA---AA---------------AGC--AA-AGG-AAAGCGCATA----ACGAGTAA--A------------------A-GTTAAAAAGTCAAAAAAGTTTAAA-AC-----------------------------AT------------------------ATT-GTAAAGCCG--TACTG---------CGTAAGCCAGT---------------------------CAGCGCTT-AAAGTAC-------------------------CATA-TATAGGTGTTCTTAT------CTATA--CCCACACTCAA----TTAATTGCAGCTGAATGCACGACTCCTTGCAGAAAGGTGAATATATTTC-AAACTAGTC-------ATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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droEre2
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Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAACAAAAGCAGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000020
...............................................................................................CAAAAGGGGAAGC-----GTAAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.................................................................................................AAAGGGGAAGC-----GTAAGCAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCTG---------CGTAAGCCAGT---------------------------CAGCGCT......................................................................................................................................................2611.0010001000
......................................................................................................................................................................................................................................................................................................TAT-TT------------------GTATGTGCC---------------TGTGTGTG-------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGCAGCTGAG-------------------CCCGAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAT-------------------------------------------TACGCAA---------------------------A----TAACGAAG-..................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
................................................................................................................................................................................................................................................................................................................................ATGTGCC---------------TGTGTGTG-------------TAATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATA--CCCACACTCAA----TTAATTGCAGCC........................................................2711.0010100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCTGAATGCACGACT............................................1911.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGT---------------------------CAGCGCTT-AAAGTAC-------------------------CATA-TATA...........................................................................................................2711.0010000100
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...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGCTG---------CGTAAGCCAGT---------------------------CAGCGCT......................................................................................................................................................2711.0010000100
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.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCTGAATGCACGACTCCT.........................................2211.0010100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAACCACTGTCGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
..........................................................................................................................................................................................ACTTTGCGCTTCGCT--------------------------------------------------TCGGTA-----------------------------------A-TA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
..................................................................................................................................................................................................CTTCGCT--------------------------------------------------TCGGTA-----------------------------------A-TAT-TT------------------GTATGTGCC---------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000
........................................CA--------------------------------------------------GCGCAAAAGGGGAAGC-----GTAAGCAGGC--...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAAAAGCAGCTGAG-------------------CCCGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000010
..................GCAAAGGC-GGATGAA-----GCA--------------------------------------------------GCGCAAAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-TGAAT-------------------------------------------TACGCAA---------------------------A----TAACGAAG-AAA----...........................................................................................................................................................................................................................................................................................................................................................................................2611.0010000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAC-------------------------CATA-TATAGTTGTTCTTAT------CTA.......................................................................................2711.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCGTCTCCAAA-----TGAAACAATAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
.....................AAGGC-GGATGAA-----GCA--------------------------------------------------GCGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
..............................TGAA-----GCA--------------------------------------------------GCGCAAAAGGGGAAGC-----GT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACTCCTTGCAGAAAG................................1820.5010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---------------------------A----TAACGAAG-AAA----A---------------AGC--......................................................................................................................................................................................................................................................................................................................................................................1820.5010100000
...........................................................................................................................................................................................................................................................................................................T------------------GTATGTGCC---------------TGTGTGTG-------------C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19130.0810100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA---ACAACAACAGCAGCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0511000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGCAACAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0511000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAACAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0511000000
droYak3
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Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................GCAAAAGGGGAAGC-----CAAAGCAGGC--...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00201100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTAC-------------------------CATA-TATAGTTGTT.....................................................................................................2111.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--CCCACACTCAA----TTAATTGCAGCTGA......................................................2611.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-AAAGTAC-------------------------CATA-TATAGTTGTT.....................................................................................................2311.00101000000000
...............................GAA-----GCA--------------------------------------------------GCGCAAAAGGGGAAGC-----CA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
................AGGCAAAGGC-GGATGAA-----GCA--------------------------------------------------GCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------ATC--AA-AGGAAAAGCGAATA----ACGA.............................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.......AACGGAA-AAGGCAAAGGC-GGATGAA-----GC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-AAAGTAC-------------------------CATA-TATAGT.........................................................................................................1911.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTCTTAT------CTATA--CCCA...............................................................................2011.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTGAA-TAAT-TGAAT-------------------------------------------TACGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
......................................................................................................................................................................................................................................................................................................................CTAATC-AGAGTGTGCC---------------TGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCGTGTACTG---------AGTAAGCCAGT---------------------------CAGC.........................................................................................................................................................2911.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGCCGTGTACTG---------AGTAAGCC...........................................................................................................................................................................................2411.00100000010000
................................................................................................................................................................................................................................................................................................................GCAAATCTAATC-AGAGTGTGCC---------------TG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000100000
.................GGCAAAGGC-GGATGAA-----GCA--------------------------------------------------GCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA----------GCAAAAACCACTGTCGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGCTGAATGCACGACT............................................2011.00100010000000
...................................................................................................................................................................................................................................................................................................................................................................................A--TAAATCAAAACG------AG-------------------------------------AGCAACAACAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACA--TTAA--------AGTAACAGAATT-A-------ATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--AA-AGGAAAAGCGAATA----AC...............................................................................................................................................................................................................................................................................................................................................1911.00101000000000
...GAAAAACGGAA-AAGGCAAAGGC-GGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGT---------------------------CAGCGCTT-AAAGTAC-------------------------CAT.................................................................................................................2311.00100000010000
......................................................................................................................................................................................................................................................................................................................CTAATC-AGAGTGTGCC---------------TGTGTGTG-------------TAATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGTGTACTG---------AGTAAGC............................................................................................................................................................................................1911.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTAAAGCCGTGTACTG---------AGTAA..............................................................................................................................................................................................2311.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATA----ACGAGTAA--A------------------AAGT--AAAAGT-.......................................................................................................................................................................................................................................................................................................2411.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAATA----ACGAGTAA--A------------------AAGT--..............................................................................................................................................................................................................................................................................................................2111.00100000010000
.........................................................................................................................................................................ATATA----TTT-AAAAACTTTGCGCTTCGCT--------------------------------------------------T............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------------TAGCAGCTTAG-------------------CCCGAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAA-AC-----------------------------AA------------------------ATTCGTAAAGC.....................................................................................................................................................................................................................2011.00101000000000
..................................................................................................AAGGGGAAGC-----CAAAGCAGGC--...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----TAACTAAG-AAAA--AA---------------ATC--AA-AGGAAAAGC..........................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC--AA-AGGAAAAGCGAATA----ACG..............................................................................................................................................................................................................................................................................................................................................2211.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCGTGTACTG---------AGTAAGCC...........................................................................................................................................................................................2111.00100000010000
........................................CA--------------------------------------------------GCGCAAAAGGGGAAGC-----CAAAGCAGGC--...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
........................................................................................................................................................................................................................................................................................................................AATC-AGAGTGTGCC---------------TGTGTGTG-------------TAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
.............................................................................................................................................................................................TTGCGCTTCGCT--------------------------------------------------TCGGTA-----------------------------------A-T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
............AA-AAGGCAAAGGC-GGATGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAATGCACGACTCCTTGC......................................2111.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGCTGAATGCACGACTCCTTGC......................................2711.00101000000000
.CGGAAAAACGGAA-AAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
.......AACGGAA-AAGGCAAAGGC-.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAAAGCCGTGTACTG---------AGTA...............................................................................................................................................................................................2111.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACTGTCGCGTCTCCAAA-----TGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
..............................................................................................GCAAAAGGGGAAGC-----CAAAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGTAAAGCCGTGTACTG---------AGTA...............................................................................................................................................................................................2411.00100000010000
............................................................................................................................................................................................................................................................................................................GTATGCAAATCTAATC-AGAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
......................................................................................................................................................................................AAAAACTTTGCGCTTCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCA---ACAACAA------------------TAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
droEug1
-CGGAAAAACGGAT-AAGGCAAAGGC-GGATGAA-----GCA--------------------------------------------------GCGCAAAAGG-AAGGC-----GTAAGCAGGC--GCTATA---A--------ATTAACAAAAAAATAAAAATAAATTTACATA----TAAAAAAAACTTTGCGCTTAGCT--------------------------------------------------TCG--------------------------AAATTCGCGGAAG-TAAT---------AATCTAATC-AGAGTGTGCC---------------TGTGTGTA-------------T--TTGTTT--AAAA----AACC------CA-------------------------------------AGCAGCAGCAGCA---GCAACAACAGCAACAACAACAGCAAAAGCAGCAGAACAA------------------CAAAAAGTAAAGAAA-CCCGTT--ATAAATA--AAAAACCCC-TAATCAA-------ATTCAGGATCCACTACAA------------CAACAACA----------ACAAAAACCACTGTCGCGTCTCCAAA-----TGAAACAATAATTGAA-TAAT-TGAAT-------------------------------------------TATCCA----------------------------A----TAACGAAA-TTAAAGAA---------------ATC------------------AACG-ACGAGTATAAAAA-G--TTGAAAAAC--------------------------AAA-AC-----------------------------AA------------------------A-----------------TA---------AGTAAGCCAGTCG-AGGAGATAT--ATAGCCGCAAAATCAGCGTTT-AAAATAC-------------------------CATA-TATAGTTGTTCTTAT------CTATA--CCCACACTCAA----TTAATTGCAGCTGAATGCACGACTCCTTGCAGAAAGGTGAATATATTTCAAAACTAGTC-------ATSizeHit CountTotal NormTotal
No Reads
droBia1
-CGGAAAAACGGAA-AAGGCAAAGGC-GGATGAA-----GCA--------------------------------------------------GCGCAAGGGGAGAGGC-----GTAAGCAGGC--GCTAAAA--A--------ATTT---------TTAAAA------TATATT--TCTT--AGAAACTTTGCGCTCAGCT--------------------------------------------------TCC--------------------------A-ACTCGCGGAAAATTTC---------GATCTAATC-GGAGAGTGCC---------------TGTGTGTG-------------T--TTGTTT--AA------AAGC------CA-------------------------------------AGCAACAACAACA---ACA---A------------------AAGCAGCAGAACAACAAA--------A---------------------ACCATA--ATCA-------AAACACC-TAACCGA-------ATCCAGGATCCACTACAA---------------CAACA----------ACAACAACCACTGTCGCGTCTCCAAA-----TGAAACAATAATTGAA-TAAT-TGAAA-------------------------------------------TACCCA----------------------------A----TAAAGAAG-AA---------------------------------------AATA----ACGAGTAA--AAA-----------------------------------GTTTAAGCAA--------------------------------------------------------------------------A---------AGTAAGCCAGTCG-AGGAGATAT-TGTATCCGCACA-TCAGCGTTT-AAAGTAC-------------------------CATA-CATAGTTGTTCTTAT------CTATA--CCCACACTCAA----TTAATTGCAGCTGAATGCACGACTCCTTGCAAAAAGGTGAATATATTTC-AAACTAGTC-------ATSizeHit CountTotal NormTotal
No Reads
droTak1
-CGGAAAAACGGAA-AAGGCAAAGGC-GGATGAA-----GCA--------------------------------------------------GCGCAA-AGGAGAGGC-----GTAAGCAGGC--GCTAAAAAAT--------ATTT---------T-AAAA--------TATA----TCA-AAAAACATTGCGCTTGGCT--------------------------------------------------TCG--------------------------AAATTCGCGAAAT-AAAT---------AATCTAATC-AGAGTGTGAC---------------TGTGTGTGT--------G---T--TTGTTT--AA------AACC------CA-------------------------------------AGCAACAACAACA---ACA---A------------------AAGCAGCAGAACAACAAA--------AA--CCCAAAA-----------ACCATA--ATAA------AAAACCCC-TAATCAA-------ATTCAGGATCCACTACAA---------------CAACA----------ACAAAAACCACTGTCGCGTCTCCAAA-----TGAAACAATAATTGAA-TAAT-TGAAT-------------------------------------------TACCCA----------------------------A----TAAAGAAA-A------------------------CAAAA-AGC-AAAGCGAATA----ACGGGTTG--AAA-----------------------------------GTTTAAA-AA--------------------------------------------------------------------------A---------AGTAAGCCAGTCG-AGGAGATAT-TATATCCGCACA-TCAGCGTTT-AAAGTAC-------------------------CATA-TATAGTTGTTCTTAT------CTATA--CCCACACTCAA----TTAATTGCAGCTGAATGCACGACTCCTTGCAGAAAGGTGAATATATTTC-AAACTAGTC-------ATSizeHit CountTotal NormTotal
No Reads
droEle1
-CGGAAAAACGGAAAAAGGCAAAGGC-GGACGAA-----GCA--------------------------------------------------GCGCCAAAGGAGAGGC-----GTAAGCAAGC--GCTAAA---A--------ATTA---------AAAAAA-----GTATATA----TTAAAAAAACTTAGCGCTAGGCT--------------------------------------------------TCG--------------------------AAATTCGCGGAAA-TAAT---------AATCAAATTAAGAGTGTGCC---------------TGTGTGTGT--------G---T--CTGTTT--AA------AGCC------GA-------------------------------------AGCAACAACAACA---ACA----------------------AAGCAGTAGCACAACAAC--AATTAAAACATCCAAAAAGTATAAATA-CCTATA--TTAAATA----AAACCCC-TAATCAA-------ATGCAGGATCCTCTACCA------------CAACAACA----------ACAAAAACAACTGTCGCGTCTCCTAA-----TGAAACAATAATTGAA-TAAT-TGAAT-------------------------------------------TAACCA----------------------------A----TAACGAAA-AATAAGAAAAACAAGAAAAGCAAAGC--AA-AGC-AAAACGAATA----ACGAGTAA--A------------------A----------------------------------------------------------------------------------------------------------------AGTAAGCCTGTCG-AGGAGATATATATATCTGCACA-TCAGCGTTT-AAAGTAC-------------------------CATA-AATAGTTGTTCTTAT------CTATA--CCCACACTCAA----TTAATTGCAGCCGAATGCACGACTCCTTGCAGAAAGGTGAATATATTTC-AAACTAGTC-------ATSizeHit CountTotal NormTotal
No Reads
droRho1
-CGGAAAAACGGAAAAAGGCAAAGGC-GGATGAA-----GCA--------------------------------------------------GCACAAAAAGAGAGGC-----GTAAGCAAGC--GCTAAA---T--------TTTA---------AAAAAA----ATTATATA----TAA-AAAAACTAAGCGCTAAGCC--------------------------------------------------TCC--------------------------AGATTCGCGGAAA-TATT---------AATCTAATCTAGAGTGTGCC---------------TGTGTGTGT--------G---T--TTGTTT--AA------AATC------CA-------------------------------------AGCAACAACAACA---ACA----------------------AATCAGCAGAACAACACA--------AA----C--AAAGTATAA--A-TCCATT--ATAAAAA----AAACCCC-TCATCAA-------ATGCAGGATCCATTACCA---------------CAACA----------ACAAAAACAACTGTCGCGTCTCCAAA-----TGAAACAATAATTGAA-TAATATAAAT-------------------------------------------TAACCA----------------------------A----TAACGAAA-AATAA-AAA--------------AAC---A-AGC-AAAGCGAATA----ACGAGTAA--AAA------------------GTTAA------------------------------------------------------------------------------------------------A---------AGTAAGCCTGTCG-AGGAGA-----------------------TTT-AAAGTAC-------------------------CATA-TATAGTTCTTCTTAT------CTATA--CCCACACTCAA----TTAATTGCAGCTGAATGCACGACTCCTTGCAGAAAGGTGAATATATTTC-AAACTAGTC-------ATSizeHit CountTotal NormTotal
No Reads
droFic1
-CGGAAAAACGGAAAAAGGCA-AGGC-GGATGAA-----GCA--------------------------------------------------GCGCGA-AGGAGAGGC-----GTAATCAAAC--GCTAAAATAT--------ATTT---------T-AAAA------TTTAT----------AAAACACTGCGCTAGGCT--------------------------------------------------TCGG--------------------------AATTCGCGAAT--AAAT---------TATCTAATC-GGAGTGTGAT---------------TGTGTGTG-------------T--TTGTTTCCAAGAAAAAAACC------CA-------------------------------------AGCAACAACAACA---ACA----------------------AAGCAGCAGAACAAAA----------AA--CCCAAAAAGTAAAA--A-CCCATT--ATAA------AAATCGCC-TAATCAA-------ATGCAGGATCCACTACAA---------------CAACA----------ACAAAAACAACTGTCGCGTCTCCAAA-----TGAAACAATAATTGAA-TAAT-TGAAT-------------------------------------------TAACCA----------------------------A----TAACGAAA-AAG---AA---------------ATA--TA-AGC-AAAGCGAATA----ACGAGTAA--AAA------------------GTT--------G---------AA---------------------------------------------------------------------TCG--TACTA---------AGTAAGCCAGTCG-AGGAGATAT--ATATCCGCAAA-TCAGCGTTT-AAAGTAC-------------------------CATA-TATAGTTGTTCTTAT------CTATA--CCCACACTCAA----TTAATTGCAGCTGAATGCACGACTCCTTGCAAAAAGGTGAATATATTTC-AAACTAGTC-------ATSizeHit CountTotal NormTotal
No Reads
droKik1
-CGGAAAAACGCCAAAACGCAACAGC-GGATGAA-----GCAGGGGA----------------------------------------------AGCAGAGAG-AGAGA-----GATAGCAGGGCCACTGAA---A--------AT-------------------------------------------TAAGCGCTAAGCTGA----AGTAAGCCAAAAACAC----------------------------TCGGTATCG--------------------ATATT-GTGTTG--AAAT---------TAGCTTGTG-CCAGTGTGCCCAATGTCTACGAAAGTGTATGTGC--------G---T--TTGTTTTTA-TAT---A--ACCAA--CA------------------ACAATAAATCTGCGACACCAGCAACAACAACA---ACA----------------------ACTCAGCAAA-CA----AACAACAAAAGCAACCAAAATATAAAA--A--CTATA--ACAA--------A-AGCC-TAATCAA-------TCGCAGGAACTTCGATCA--AAATAATCAACAACAACAA---------ACAAAAGCAACTGTCGCGTCTCTAAT-----TGAAACAATAATTGAAATA---------CCCAGAAT-ATATAAAGT-------------------TAGATTAA--------------------------------------ACGAGT-AAA---AA---------------A-------ATA-AAAGCTAATA----ACGAATAA--G------------------AAGT-----------------------------------------------------------------------------------------ACCGTGTACTGAGCGTACTGAG------AGT-A-AGGAGATA---ATATCCGCACA-TCAGCGTTTAAAAGTAC-------------------------CATA-CCTAGTTGATCTTAT------CTGTA--G-----CTCAA----TTAATTGCAGCTGAATGCACGACTCCTTGCAAAAAGGTGAATATATTTC-AAACTAGTCATAAGAATTSizeHit CountTotal NormTotal
No Reads
droAna3
-CGGAAAAACGGAA--AAGCAACAGC-GAACAG--CAAGGCAGGCGCA--------------------------------------------TAGAAGGGGGCGAGGTGGTTAGCAAGCAGGG--GC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................AAGCAACAGC-GAACAG--CAAGGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100
.............................................GCA--------------------------------------------TAGAAGGGGGCGAGGTGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
................................G--CAAGGCAGGCGCA--------------------------------------------TAGAAGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.............................................................................................AGAAGGGGGCGAGGTGGTTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
..............................................................................................GAAGGGGGCGAGGTGGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
............................................................................................TAGAAGGGGGCGAGGTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
..................GCAACAGC-GAACAG--CAAGGCAGGCGCA--------------------------------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000100
...............................................A--------------------------------------------TAGAAGGGGGCGAGGTGGTTAGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
droBip1
-CGGAAAAACGGAA-A-AGCAACAGC-GAAC-AAGCATTGCAGGCGCA--------------------------------------------TAGCAGGGGGCGAGG-------ATAGCAGGGGCG-T-------CTAAGCAAATT--------GGCCC----------------------------------GTTTAGGTGCTGCTACTAATTCGAAAACTCATCATCATCATCATCATAGTCGTCGTTGTCGTCGTCGATAGTTTTTCGCTAGAATTAACCTTCGCGGCA--------------------AATT-AGTGCGTATT---------------TGTGTGTGTGTCTGTGCTTGTT--TTGTTTTTA-TAT---A--ACCAATCCACACAAAAGCTTA-AAACTA------ATCTGT------ATCAACAATAGCA---ACAACCA-------------------GG---CCAAATCAAAA---------------C--AGAACATAA--A-ACCAG---ATAAAAACAAC-AAT--C-TATATAAACTTGAATCGCAGGA---------G---------------TAACA----------ACAAAAACAACTGTCGCGTCACTGAA-----TGAAACAATAATTGAA-TAAT-TGCAT-------------------------------------------TAAAAAT---------------------------ACAAATAA----A-AGTA--AA---------------AAA--AA-ACG-AAAACGAAAA----ACAAG---------------------------------------------------------------------------------------------------------------------------TACTG---------AGTAAGCAAGTCA-AGGAGACA---------------CTAGCGTTC-AAAGTAC-------------------------CCCACTAAAGCTGTTCTC-----TATCTCCA-CCCCACACTCAA----ATAATTGCAGCTGAATGCACGACTCCTTGCAGAAAGGTGAATATATTTA-AAACTAGTC-------CTSizeHit CountTotal NormTotal
No Reads
dp5
ACAGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAACA----------ACAAAAGCAACTGTCGCGTCAC-ATA-----TAAAACAATAATTGAA-TAAT-TGAAT--------------------------------------------ACC------------------------------A----TAACAAAT-AAT--------------------------------------AATAACGTACGAGTACATAT-TGTATTGTAAAGTAAA-------------------------G-TAAAGTAAGCCCAGCATA----------------------------------------------------------------------------------AAGCG------ATATCCACATA--AAGCGTATCCAAGTAC-------------------------CATA-TATAGTCGTTCTTAT--------ATA--GCCACACTCAAA---TTAATTGCAGCTGTATGCACGACTCCTTGCAAAAAGGTGAATATATCTAAAAACTAGAT-------GTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTAAGCCCAGCATA----------------------------------------------------------------------------------AAGC.................................................................................................................................................................................2012.0020200000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACA----------ACAAAAGCAACTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTATCCAAGTAC-------------------------CATA-TATAGT.........................................................................................................2511.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-TAAT-TGAAT--------------------------------------------ACC------------------------------A----TAACAAAT-..................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--------------------------------------------ACC------------------------------A----TAACAAAT-AAT--------------------------------------AATAACGTACGA.............................................................................................................................................................................................................................................................................................................................................2911.0010000000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTGCAGCTGTATGCACG...............................................2111.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA----------ACAAAAGCAACTGTCGCGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGTATCCAAGTAC-------------------------CATA-...............................................................................................................2011.0010001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGCCCAGCATA----------------------------------------------------------------------------------AAGCG------..........................................................................................................................................................................1911.0010000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACGTACGAGTACATAT-T...................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGTAAA-------------------------G-TAAAGTAAGCCCAGC..........................................................................................................................................................................................................................................................................2611.0010010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAT-AAT--------------------------------------AATAACGTACGA.............................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCAAGTAC-------------------------CATA-TATAGTC........................................................................................................2311.0010000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA----------ACAAAAGCAACTGTCGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAACTGTCGCGTCAC-ATA-----........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCGTCAC-ATA-----TAAAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACA----------ACAAAAGCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19180.0610010000000
droPer2
ACAGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAACA----------ACAAAAGCAACTGTCGCGTCAC-ATA-----TAAAACAATAATTGAA-TACC-----------------------------------------------------------------------------------A----TAACAAAATAAT--------------------------------------AATAACGTACGAGTACATAT-TGTATTGTAAAGTAAA-------------------------G-TAAAGTAAGCCCAGCATA----------------------------------------------------------------------------------AAGCG------ATATCCACATA--AAGCGTATCCAAGTAC-------------------------CATA-TATAGTCGTTCTTAT--------ATA--GCCACACTCAAA---TTAATTGCAGCTGTATGCACGACTCCTTGCAAAAAGGTGAATATATCTAAAAACTAGAT-------TTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGCAACTGTCGCGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.003300000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---TTAATTGCAGCTGTATGC..................................................2011.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATA--AAGCGTATCCAAGTA..............................................................................................................................................2111.001000010
droWil2
-CAAAAAGTAATAA-AAAGCAAAAAATAAATAG--CAAGAAAGTAAAGAAAATTCAAATAATAAAATTAATCAGAATAAAAAGCAATAAGCAAAGCAAAAGAAATAG------ATAAACGAGA--AAT-------TTAA-CAAAAA--------TTTCT----------------------------------GTAT-----------------------------------------------------------------------------------------------A-TGT-T--------TATGTGTA--CGTGTGTGTG---------------TGTGTGTGT--------G---T--ATATTT--TATAT-----AA------CA-------------------------------------AGTGACAACAACAACAAC---AATTGCAACAA---------TAGCAACATTG-------------------GCAAAAGT---------------------------------------------------------GTTCAACAA------------------CAACAAAATAGAAGAACAAAATCCA-------ATTTACAAA-----ATCAACA-------------------------------------------------------------------------------------------------------AA-------------------------------CAAAA-AAT-AAAACAAAT-----------TA----------------------------------------ATTTAAT-TA----------------AACGAGACCAAACTTACATATATCACACTATATACATACATACATACATACATATACTGATATTAATATGTATGTATGTATATAGATACA---------------TATATGTAT-GTAGTTG-------------------------G-----TTACTTGATCTTATCTATATAATCT-ATCCACACTCAAATTAATAATTGCAGCTGTATGCACGACTCCTTGCAGAAAGGTGAATATTAATTTAAACTAGAA-------ATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTATATACATACATACATACA.......................................................................................................................................................................................................................2313.00301020
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTATATACATACATACATAC........................................................................................................................................................................................................................2213.00303000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACTATATACATACATACAT..........................................................................................................................................................................................................................2212.00202000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTATATACATACATACATA.........................................................................................................................................................................................................................2221.50303000
..............................TAG--CAAGAAAGTAAAGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTAATAATTGCAGCTGTATGCA.................................................2411.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTATGTATGTATATAGATAC..............................................................................................................................................................................2311.00101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTAT-GTAGTTG-------------------------G-----TTACTT........................................................................................................2211.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACTATATACATACATACATA.........................................................................................................................................................................................................................2311.00101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTATGTATATAGATACA---------------..............................................................................................................................................................2211.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACACTATATACATACATACATA.........................................................................................................................................................................................................................2511.00101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATTG-------------------GCAAAAGT---------------------------------------------------------G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTATATACATACATACATA.........................................................................................................................................................................................................................2140.75303000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTATATACATACATACATACA.......................................................................................................................................................................................................................22120.42503020
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTATATACATACATACAT..........................................................................................................................................................................................................................2040.25101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTATGTATGTATATAGATA...............................................................................................................................................................................2280.13110000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTATGTATGTATATAGATA...............................................................................................................................................................................2190.11101000
droVir3
-AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTT---------------TGTGTATT-------------T---TGTGTTTA-CAT---A--ACTCGTCTTAAAGCAAACGAAGCAACTAAAA--------T------AACGACAACAACA---------A------------------CAACAACTGAATAAAAAA--------AG--AAGAAAA-----------AATAAACGAGAAG-------AGT--A-TCAACAAA------TTTGAGAA--AGCAGCAG---------CAATAACAACT----------GAAACAGCCACATTGGAGTGTCGTATGTAATT-----TATAAGAAATAA---------AAGCAGAAT-ATATAATATAATTATACAAAAGTG--TACACGTTAACAACTGAAATCCTAATATATTAAAATACAATA----TAAAGAAT-AC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------AGAACAG-------------------------CATA-TATACTAGTTAA--T------ATAGC--CCCGCACTCAA----TTAATTGCAGCTGTATGCACGACTCCTTGCAGAAAGGTGAATATATTTA-T--GTGAACATAA--AATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCACGACTCCTTGCAGA...................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAACT----------GAAACAGCCACATTGGAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGTATGCACGACTCCTTGC......................................2211.001000000000000000000010000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAA------TTTGAGAA--AGCAGCAG---------C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCCTTGCAGAAAGGTGA............................2011.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAACT----------GAAACAGCCAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGC--CCCGCACTCAA----TT..................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACAACAACA---------A------------------CAACAACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21130.081001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AACGACAACAACA---------A------------------CAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AACGACAACAACA---------A------------------CAACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000000000000000000000000000000000000000000000000000000000000
droMoj3
-C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA-TATACTAGTACATAA------ATATTGCCCCGCACTCAA----TTAATTGCAGCTGTATGCACGACTCCTTGCAGAAAGGTGAATATATTA--AATGTGAAC-------ATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
-CAAAATAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACAACG------AT-------------------------------------AACAACAACAACA---ACA---A--------------------------GAACAACAAT----------------------------------------A----------------------A-------TAATAATAACAACAGCAA---------CAACAACAACA----------GCAACAGCAACATTGGAGTGTCATATGTAAAT-----GATAAATAATAA---------ATACATAATAATATAA--TAATTATACAGAAGTGTGTTTACATTAACCAA---------------------------T----TAATTAAA------------------------TCC--AA-ATA-AAAGCTAATA----CCATATAT--A------------------T-----------------------------------------------------------------------------------------------------AA---------AGAATACAAGTAC-AACAAATAT-------------------------ATATACCATATATTTAATAATATATATAATATATA-TAAATTAGTACATAT------ATAGC--CCCGCACTCAA----TTAATTGCAGCTGTATGCACGACTCCTTGCAGAAAGGTGAATATATCTA-TATATGTAC-------ATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA----TTAATTGCAGCTGTATGCACG...............................................2311.00110
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGAAGTGTGTTTACATTA................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAA---------CAACAACAACA----------GCAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05110

Generated: 05/18/2015 at 06:54 PM