dsi_25036

Name	Class	Family	Strand
TART_DV	LINE	Jockey	-
(TTG)n	Simple_repeat	Simple_repeat	+

GCTACAACAACTCCAACAACAACAGCAACAACAACAACAGCAGCAACACCAACAACAGCCGCTACACCAACAACAGCAACTGCAACACCAGCAGCAGCAACAACACCACCAACAACACTATCAGCAACATGCCATTCAACACCAGCAATCACAACAGCAGGCTAGCAAAATCTCATATCGTGGCATTTTCACCACCACAGGCAACGCGATGAACGCAGCAGCTGCCGCAGCAGCCGCCGCAGCACAGCAG ************************************************......(((((((............((..((((.......))))..)).........................(((...))).......................))).))))................((((........)))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M023 head	SRR618934 dsim w501 ovaries	O001 Testis	SRR553487 NRT_0-2 hours eggs	M053 female body
..............................................................................................................................................................AGGATAGCAGAATCTCGTATC.......................................................................	21	3	2	1.50	3	2	1	0	0	0	0
......................................................................................................................................................ACCATAGCAGGCTAGCAA..................................................................................	18	2	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................CAGGATAGCAGAAGCTCATATC.......................................................................	22	3	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................GATGAACTAAGCAGCTGCC........................	19	2	1	1.00	1	0	0	1	0	0	0
.......................................................CAGCCGCTACACCAACAA.................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	1	0	0
.............................................................................................................................................................CAGGATAGCAGAATCTCGTATC.......................................................................	22	3	2	0.50	1	1	0	0	0	0	0
.....................................................................................................................................................................................................CAGGCACCGTGATGAAC....................................	17	2	9	0.11	1	0	0	1	0	0	0
......................................................................................................................................................ACCATAGCAGGCTAGCAAC.................................................................................	19	3	20	0.10	2	1	0	0	0	0	1
....................AACAGCAACAACAACAACAGCGGC..............................................................................................................................................................................................................	24	1	11	0.09	1	0	0	1	0	0	0

CGATGTTGTTGAGGTTGTTGTTGTCGTTGTTGTTGTTGTCGTCGTTGTGGTTGTTGTCGGCGATGTGGTTGTTGTCGTTGACGTTGTGGTCGTCGTCGTTGTTGTGGTGGTTGTTGTGATAGTCGTTGTACGGTAAGTTGTGGTCGTTAGTGTTGTCGTCCGATCGTTTTAGAGTATAGCACCGTAAAAGTGGTGGTGTCCGTTGCGCTACTTGCGTCGTCGACGGCGTCGTCGGCGGCGTCGTGTCGTC ************************************************......(((((((............((..((((.......))))..)).........................(((...))).......................))).))))................((((........)))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	SRR553488 RT_0-2 hours eggs	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	M053 female body
.................................................................TGGCTGTTGTCGTTAACGTTGT...................................................................................................................................................................	22	2	1	1.00	1	0	1	0	0	0	0	0
.....................................................TTTTCGGCGATGAGGTTGT..................................................................................................................................................................................	19	2	2	0.50	1	0	0	1	0	0	0	0
...............................GTTGTTGTCGTCGTTGT..........................................................................................................................................................................................................	17	0	20	0.40	8	6	0	0	0	0	2	0
...........AGGTTGTTGTTGTCGTTGTTCT.........................................................................................................................................................................................................................	22	1	3	0.33	1	0	0	0	1	0	0	0
...TGTTGTTGAGGTTATTGTTGT..................................................................................................................................................................................................................................	21	1	4	0.25	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................................TGCGCTACTTCCGTCGTCTG...........................	20	3	4	0.25	1	0	0	0	0	1	0	0
................................................................ATGGCTGTTGTCGTTAACGTTGT...................................................................................................................................................................	23	3	5	0.20	1	0	1	0	0	0	0	0
................................TTGTTGTCGTCGTTGT..........................................................................................................................................................................................................	16	0	20	0.20	4	3	1	0	0	0	0	0
....................TTGTCGTTGTTGTTGTTGTCGCCGT.............................................................................................................................................................................................................	25	1	6	0.17	1	1	0	0	0	0	0	0
.................TTGTTGTCGTTGTTGT.........................................................................................................................................................................................................................	16	0	20	0.15	3	3	0	0	0	0	0	0
............................GTTGTTGTTGTCGTCGTT............................................................................................................................................................................................................	18	0	20	0.15	3	3	0	0	0	0	0	0
.....................................GTCGTCGTTGTGGTTGTTGT.................................................................................................................................................................................................	20	0	8	0.13	1	1	0	0	0	0	0	0
.........................................................................................................................................TTGTGCTCGTTAGTGTTC...............................................................................................	18	2	9	0.11	1	0	0	1	0	0	0	0
....................................TGTCGTCGTTGTGGTTGT....................................................................................................................................................................................................	18	0	9	0.11	1	1	0	0	0	0	0	0
..........TAGGTTGTTGTTGTCGTTGTTCT.........................................................................................................................................................................................................................	23	2	9	0.11	1	0	0	1	0	0	0	0
......................GTCGTTGTTGTTGTTGTCG.................................................................................................................................................................................................................	19	0	20	0.10	2	2	0	0	0	0	0	0
..........................................CGTTGTGGTTGTTGTCGCCCCTGT........................................................................................................................................................................................	24	3	10	0.10	1	1	0	0	0	0	0	0
..................................................................................................................................................................................GCACCTTAAGAGTGGTG.......................................................	17	2	11	0.09	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................................ACTTGCGTCGACGACG.........................	16	1	11	0.09	1	1	0	0	0	0	0	0
..........GAGGTTGTTGTTGTC.................................................................................................................................................................................................................................	15	0	13	0.08	1	1	0	0	0	0	0	0
......................................TCGTCGTTGTGGTTGTT...................................................................................................................................................................................................	17	0	13	0.08	1	1	0	0	0	0	0	0
...........................................................................................................................................GTGGTCGGCAGTGTTGTC.............................................................................................	18	2	13	0.08	1	0	0	0	0	0	0	1
.....................................................................................GTGGTCGTCGTCGTTGTTGT.................................................................................................................................................	20	0	15	0.07	1	1	0	0	0	0	0	0
..................................................................................GTAGTGGTCGTCGTCTTTGTTGT.................................................................................................................................................	23	2	20	0.05	1	1	0	0	0	0	0	0
..............................................................................TGACGTTGTGGTCGT.............................................................................................................................................................	15	0	20	0.05	1	1	0	0	0	0	0	0
.......................TCGTTGTTGTTGTTGTCGCCGTTC...........................................................................................................................................................................................................	24	2	20	0.05	1	1	0	0	0	0	0	0
.......................................................................................GGTCGTCGTCGTTGTTGT.................................................................................................................................................	18	0	20	0.05	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................CGGCGTCGTGTCGAC	15	1	20	0.05	1	0	0	0	1	0	0	0

Species	Coordinate	ID	Alignment
droSim2	3r:7321906-7322155 -	dsi_25036	GCTACAACAACTCCAACA---A------CAA---CAGCAACAAC---------------A---ACAAC---AG------------CAGC------------------AACACCAAC---------AACAGCCGCTACAC---CA------ACAACAGCAACTGCAACACCAGCAGCAGCAA------------------------------CAACA---CCACCAACAACACTATCAGCAACATGCCATTCAACACCAGCAATCACA---------ACAGCAGGCTAGCAAAATCTCATATCGTGGCATTTTCACCACCACAGGCAACGC------------GATGAACGCA-----GCAGC---------------TGCC---GCAGCAGCCGCC------GCAGCA------------------------CAGCAG
droSec2	scaffold_12:200437-200686 -		GCTACAACAACTCCAACA---A------CAA---CAGCAACAAC---------------A---ACAAC---AG------------CAGC------------------AACACCAAC---------AACAGCCGCTACAC---CA------ACAACAGCAACTGCAACACCAGCAGCAGCAA------------------------------CAACA---CCACCAACAACACTATCAGCAACATGCCATTCAACACCAGCAATCACA---------ACAGCAGGCTAGCAAAATCTCATATCGTGGCATTTTCACCACCACAGGCAACGC------------GATGAACGCA-----GCAGC---------------TGCC---GCAGCAGCCGCC------GCAGCA------------------------CAGCAG
dm3	chr3R:13956616-13956868 +		GCTACAACAACTCCAACA---A------CAA---CAGCAACAACA------------ACA---ACAAC---AG------------CAGC------------------AACACCAAC---------AACAGCCGCTACAC---CA------ACAACAACAACTGCAACACCAGCAACAGCAA------------------------------CAACA---CCACCAACAACACTATCAACAACATGCCATTCAACACCAGCAATCACA---------ACAGCAGGCTAGCAAAATCTCATATCGTGGCATTTTCACCACCACAGGCAACGC------------GATGAACGCA-----GCAGC---------------TGCC---GCAGCAGCCGCC------GCAGCA------------------------CAGCAG
droEre2	scaffold_4770:7678999-7679257 -		GCTACAACAACTCCAACA---A------CAA---CAGCAACAAC---------------A---ACAAC---AG------------CAGCAACACCAACAACAACAGCAACACCAAC---------AACAGCCGCTACAC---CA------ACAACAGCAACTGCAACACCAGCAGCAGCAA------------------------------CAACAACACCACCAACAACACTATCAGCAACATGCCATTCAACA---------------------ACAGCAGGCTAGCAAAATCTCATATCGTGGCATTTTCACCACCACAGGCAACGC------------GATGAACGCA-----GCAGC---------------TGCC---GCAGCAGCCGCA------GCTGCG------------------------CAGCAG
droYak3	3R:2559219-2559456 +		GCTACAA---CTCCAACA---A------CAA---CAGCAACAAC---------------A---ACAAC---AG------------CAGC------------------AACACCAAC---------AACAGCCGCTACAC---CA------ACAACAGCAACTGCAACACCAGCAGCACCAA------------------------------CAACA---CCACCAACAACACTATCAGCAGCATGCCATTCAACACCAGCAATCACA---------ACAGCAGGCTAGCAAAATCTCATATCGTGGCATTTTCACCACCACAGGCAACGC------------GATGAACGCA-----GCTGC---------------TGCG---GCAGCA---------------GCC------------------------CAGCAG
droEug1	scf7180000409246:298221-298524 +		GCATCTACAACTCCAACA---ACAACAACAACAACAGCAGCA---------------ACA---ACAAC---AA------------CGGC------------------AACACCAAC---------AACAGCCGCTACACCAACA------ACAACAGCAATTGCAACACCAGCAGCAACAA------------CAACAACAACACCACCAAC---------AACAACAACACTACCAACAACATGCCATACAACAACAGCAAGCACA---------ACAACAGGCTAGCAAAATCTCATATCGTGGCATTTTCACCACCACAGGCAACGC------------GATGAATGCA-----GCAGC---------------CGCC---GCCGCCGCCGCAGCAGCAGCAGCCCAGCAGCAACAGCAACAACAGCAGCAGCAG
droBia1	scf7180000299102:2016060-2016303 -		GCTACAA---CTCCAACA---A------CAA---CAGCAACAACA------------ACA---ACAAC---AG------------CAGC------------------AACACCA------------ACAGCCGCTACAC---CA------ACAACAGCAATTGCAACACCAGCAGCAGCAA------------------------------CAACAACAACACCAACAACACTATCAGCAACATGCCATCCAA------------------------CAACAGGCTAGCAAAATCTCATATCGTGGCATTTTCACCACCACAGGCAACGC------------AATGAATGCA-----GCAGC---------------AGCCGCCGCAGCA------------GCGGCCCAGCAGCAA------------CAGCAGCAG
droTak1	scf7180000414450:79834-80062 +		ACTACAA---CTCCAACA---A------CAA---CAGCAAC------------------------AAC---AG------------CAGC------------------AACACCAAC---------AACAGCCGCTACAC---CA------ACAACAGCAACTGCAACACCAGCAGCAA---------------------------------CAACA---CCAACAACAACACTATCAGCAACATGGCATTCAA------------------------CAACAGGCTAGCAAAATCTCATATCGTGGCATTTTCACCACCACAGGCAACGC------------GATGAACGCG-----GCAGC---------------CGCC---GCAGCAGC---------AGCTGCCCAGCAG---------------CAGCAACAG
droEle1	scf7180000491008:2313797-2314031 -		ACTACAA---CTCCAACA---ACAA---CAA---CAGCAACATCA------------ACT---ACAAC---AG------------CAGC------------------AACACCAAC---AAC---AACAGCCGCTACAC---CA------ACAACAGCAATTGCAACACCAGCAGC---------------------------------AAC---------ACCAACAACACTATCAACAACATGCCCTTCAACAA---------CA---------ACAACAGCCTAGCAAAATCTCATATCGTGGCGTTTTCACCACCACAGGCAACGC------------GATGAGTGCA-----GCAGC---------------CGCC---GCAGCAGC---------AGCAGCC------------------------CAACAG
droRho1	scf7180000777787:21285-21525 -		ACTACAA---CTCCAACA---ACAACAACAA---CAGCAACATCA------------ACA---ACAAC---AG------------CAGC------------------AACACCAAC---------AACAGCCGCTACAC---CA------ACAACAGCAATTGCAACACCAGCAGC---------------------------------AAC---------ACCAACCACACTATCAACAACATGCCATCCAACAACAA------CA---------ACAACAGGCTAGCAAAATCTCATATCGTGGCGTTTTCACCACCACAGGCAACGC------------GATGAACGCA-----GCAGC---------------CGCC---GCAGCAGC---------AGCAGCCCAA---------------------CAGCAA
droFic1	scf7180000453800:431182-431437 +		GCTACAA---CTCCAACA---ACAA---CAA---CAGCAACAACA------------TCA---ACAAC---AG------------CAGCA------------ACAACAACACCAAC---------AACAGCCGCTACAC---CAACAACAACAACAGCAATTGCAACACCAGCAGC---------------------------------AAC---------ACCAACAACACTATCAGCAACATGCCATCCAACAACAA------CA---------ACAACAGGCTAGCAAAATCTCATATCGTGGCGTTTTCACCACCACAGGCAACGC------------GATGAATGCA-----GCAGC---------------CGCC---GCTGCAGCCGCA------GCAGCACAA------------------CAGCAGCAG
droKik1	scf7180000302809:339239-339461 -		ACTCCAACATC---AACA---C------CAACAACAACAGTT---------------ACAACAACAAC---AG------------GACC------------------CACACCAAC---------AACAGCCGCTACAC---CA------ACAGCAGCAGCTGCAGCATCAACAGC---------------------------------AAC---------ACCAACAACACTACCAACAACATGCCATCCAACAC---------------------CAACAGGCTAACAAAATCTCATATCGTGGCATTTTCACCACCACAGGCAACGC------------CATGAACGCA-----GCAGC---------------AGCC---GCCGCAGC---------AGCTGCC------------------------------
droAna3	scaffold_13340:11764845-11765068 -		AGT--------TCCAACA---A------CAA---CAGCAACATC---------------C---ACAAC---AA------------CAGC------------------AACACCAAC---------AACAGCCCCTACAC---CAGCAGCAACAACAGCAACTCCAACACCAGCAGC---------------------------------AAC---------ACCAACAACACTATCA---ACATGCCATCCAACAACAG------CA---------GCAACAGGCTAGCAAAATCTCATATCGTGGAATTTTTACCACCACAGGCAACGC------------GATGAATGCA-----GCAGC---------------CGCA---------GCCGCA------GCGGCG------------------------CAACAG
droBip1	scf7180000396691:666102-666336 -		GCTACAACAAC---ACCA---A------CAA---CAGCAACAACA------------TCC---ACAAC---AG------------CAGC------------------AACACCAAC---AACAACAACAGCCGCTACAC---CAGCAGCAACAACAGCAACTCCAACACCAGCAGC---------------------------------AAC---------ACCAACAACACTATCA---ACATGCCATCCAACATCAG------CA---------GCAACAGGCTAGCAAAATCTCATATCGTGGCATTTTTACCACCACAGGCAACGC------------GATGAACGCC-----GCAGC---------------CGCA---GCAGCA------------GCGGC---------------------------GCAA
dp5	2:29043199-29043460 +		TCTACAGCAAC---AACA---A------CAA---ACTCAACAACAACACCAACAATCTCA---------------------------AC------------------AACAGCTGC---------AACAACAGCAACAC---CA------ACATCAACAGCTGCAACACCAACAACAACAG------------------------------CAACTCCAACAACACCAACACTTTCAACAACAAG---TACAACAA---------CA---------ACAACAAACTGGCAAAATCTCATATCGTGGCATTTTCACCACAACAGGAAACGC------------AATGAATGCC-----GCAGCAGC------------AGCC---GC---------------GGCTGCCCAACAGCAGCAGCAGCAGCATCAGGCGCAA
droPer2	scaffold_6:4368201-4368456 +		TCTACAGCAAC---AACA---A------CAA---ACTCAACAACAACACCAACAATCTCA---ACAAC---AG------------CTGC------------------------------------------AACAACAG---CA------ACATCAACAGCTGCAACACCAACAACAACAG------------------------------CAACTCCAACAACACCAACACTTTCAACAACAAG---TACAACAA---------CA---------ACAACAAACTGGCAAAATCTCATATCGTGGCATTTTCACCACAACAGGAAACGC------------AATGAATGCC-----GCAGCAGC------------AGCC---GC---------------GGCTGCCCAACAGCAGCAGCAGCAGCATCAGGCGCAA
droWil2	scf2_1100000004776:18536-18773 -		GCAACAACAGC---AGCAACAA------CAA---CAGCAGCAAC---------------A---ACAAC---AG------------CAACAGC---------------AACAACA------------ACAGCAGCAGCAA---CA------ACAACAGCAGCAACAACAACAGCTGCAGCAGCAA---------------------------CAGCA---ACAACAGCAGCAGCAACAGCAACAGC---AACAACAGCAGCAACAACA---------ACAGCAG--CAGCAACAAC--------------------------AGCAACAGC------------AACAACAACA-----GCAGCAACAACAGCAACAGCAACA---ACAGCAGC-----------------------------AGCAGCAGCAACTGCAA
droVir3	scaffold_13047:6703616-6703871 -		CCACCAACATC---AACA---C------CAA---CAGCAACATC---------------------------AGCAACACCAACAGCAGC------------------AACA---------------------ACAACAC---CA------ACAACAGCAACAACAACAACAACAGCAGC------------------------------AAC---------AACAGCAACACTATCAACAACATGCACTACAGCAGCAACAACAACAACACCAACAACAACTGCCTGGCAAAATCTCATATCGCGCCATTTTCACCACGACAGGCAACGCTAACAACAATACAATGAGCGCCGCACAGCAAC---------------TACA---GCAGCAAC-----------------------------------AACAGCAGCAG
droMoj3	scaffold_6496:19027070-19027322 +		GCAGCAGCAGC---AACAGCAG------CAG---CAGCAGCAGC---------------A---ACAGC---AG------------CAAC------------------AGCAGCAAC---------AGCAGCAGCAGCAG---CA------ACAGCAGCAGCAGCAACAACAGCAGCAGCAACAACATCAGCAG---------------CAGCAGCAACATCATCATCAGCAGCAGCAGCAACATC---AGCAGCAGCAG------CA---------GCAGC-----AGTGGCATCAGCAGCAGCAGCAACATCAGCAGCAGCAGCAGCAA------------CATCA--GCA-----GCAGC---------------AGCA---GCAGCAGC-----------------------------AGCAGCAGCAGCAGCAG
droGri2	scaffold_14830:2581244-2581487 -		CCAACAACATC---AGCA---A------CAA------------C---------------A---CCAACAACAGCAACACCAACAGCAGC------------------AGCAACAACAACAAC---AACAACACCTACAA---CA------------ACAGCAGCAACAACAGCAACACCAA---------------------------CAAC---------AACAGCAACACTATCAACAACATGCACTACAACAACAACAC---CA---------ACAACTGCCTGGCAAAATCTCATATCGCGGCATTTTCACCACCACAGGCAACAACAACAGCAACAACATGAGCGCCGCACAGCAA--------------------------------------------------------------------CTACAACAG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GCTACAACAACTCCAACA---A------CAA---CAGCAACAAC---------------A---ACAAC---AG------------CAGC------------------AACACCAAC---------AACAGCCGCTACAC---CA------ACAACAGCAACTGCAACACCAGCAGCAGCAA------------------------------CAACA---CCACCAACAACACTATCAGCAACATGCCATTCAACACCAGCAATCACA---------ACAGCAGGCTAGCAAAATCTCATATCGTGGCATTTTCACCACCACAGGCAACGC------------GATGAACGCA-----GCAGC---------------TGCC---GCAGCAGCCGCC------GCAGCA------------------------CAGCAG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................................................................................................................CAGCCGCTACAC---CA------ACAA............................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GCTACAACAACTCCAACA---A------CAA---CAGCAACAAC---------------A---ACAAC---AG------------CAGC------------------AACACCAAC---------AACAGCCGCTACAC---CA------ACAACAGCAACTGCAACACCAGCAGCAGCAA------------------------------CAACA---CCACCAACAACACTATCAGCAACATGCCATTCAACACCAGCAATCACA---------ACAGCAGGCTAGCAAAATCTCATATCGTGGCATTTTCACCACCACAGGCAACGC------------GATGAACGCA-----GCAGC---------------TGCC---GCAGCAGCCGCC------GCAGCA------------------------CAGCAG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........................................................................................................................................................................................................................................................................................................................CACCACAGGCAACGC------------GAT.............................................................................................	18	1	1.00	1	0	0	1	0
.....................................CAACAAC---------------A---ACAAC---AG------------CAGC------------------AAC........................................................................................................................................................................................................................................................................................................................................	22	12	0.08	1	0	1	0	0
.......................................................................................................................................................................ACCAGCAGCAGCAA------------------------------CAACA---...........................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0

dm3

GCTACAACAACTCCAACA---A------CAA---CAGCAACAACA------------ACA---ACAAC---AG------------CAGC------------------AACACCAAC---------AACAGCCGCTACAC---CA------ACAACAACAACTGCAACACCAGCAACAGCAA------------------------------CAACA---CCACCAACAACACTATCAACAACATGCCATTCAACACCAGCAATCACA---------ACAGCAGGCTAGCAAAATCTCATATCGTGGCATTTTCACCACCACAGGCAACGC------------GATGAACGCA-----GCAGC---------------TGCC---GCAGCAGCCGCC------GCAGCA------------------------CAGCAG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................................................................................................................................................................................................................................CACA---------ACAGCAGGCTAGCAAAATC...............................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................ACAGGCAACGC------------GATGAACGCA-----GCAGC---------------.............................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................TCTCATATCGTGGCATTTTCACCACC.......................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................CAGGCAACGC------------GATGAACGCA-----GCAGC---------------.............................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................ACAACA------------ACA---ACAAC---AG------------CAGC------------------...........................................................................................................................................................................................................................................................................................................................................	20	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................CAGCAACAGCAA------------------------------CAACA---CCA........................................................................................................................................................................................................................	20	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................................CAACA------------ACA---ACAAC---AG------------CAGC------------------A..........................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CAA---CAGCAACAACA------------ACA---ACAAC---A..............................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............ACA---A------CAA---CAGCAACAACA------------ACA---.......................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............AACA---A------CAA---CAGCAACAACA------------ACA---.......................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................GCAACAACA------------ACA---ACAAC---AG------------CA...............................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................A---CAGCAACAACA------------ACA---ACAA...................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GCTACAACAACTCCAACA---A------CAA---CAGCAACAAC---------------A---ACAAC---AG------------CAGCAACACCAACAACAACAGCAACACCAAC---------AACAGCCGCTACAC---CA------ACAACAGCAACTGCAACACCAGCAGCAGCAA------------------------------CAACAACACCACCAACAACACTATCAGCAACATGCCATTCAACA---------------------ACAGCAGGCTAGCAAAATCTCATATCGTGGCATTTTCACCACCACAGGCAACGC------------GATGAACGCA-----GCAGC---------------TGCC---GCAGCAGCCGCA------GCTGCG------------------------CAGCAG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................AAC---------------A---ACAAC---AG------------CAGCAACACC.......................................................................................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	0	0	1	0	0	0
...........................................C---------------A---ACAAC---AG------------CAGCAACACC.......................................................................................................................................................................................................................................................................................................................................................	19	5	0.20	1	0	0	0	1	0	0	0
.................A---A------CAA---CAGCAACAAC---------------A---ACAAC---A..............................................................................................................................................................................................................................................................................................................................................................................	22	17	0.18	3	0	2	0	1	0	0	0
...................................AGCAACAAC---------------A---ACAAC---AG------------CAGC.............................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0
.................A---A------CAA---CAGCAACAAC---------------A---ACAAC---...............................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0

droYak3

GCTACAA---CTCCAACA---A------CAA---CAGCAACAAC---------------A---ACAAC---AG------------CAGC------------------AACACCAAC---------AACAGCCGCTACAC---CA------ACAACAGCAACTGCAACACCAGCAGCACCAA------------------------------CAACA---CCACCAACAACACTATCAGCAGCATGCCATTCAACACCAGCAATCACA---------ACAGCAGGCTAGCAAAATCTCATATCGTGGCATTTTCACCACCACAGGCAACGC------------GATGAACGCA-----GCTGC---------------TGCG---GCAGCA---------------GCC------------------------CAGCAG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................AGCAACAAC---------------A---ACAAC---AG------------CAGC------------------...........................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

GCATCTACAACTCCAACA---ACAACAACAACAACAGCAGCA---------------ACA---ACAAC---AA------------CGGC------------------AACACCAAC---------AACAGCCGCTACACCAACA------ACAACAGCAATTGCAACACCAGCAGCAACAA------------CAACAACAACACCACCAAC---------AACAACAACACTACCAACAACATGCCATACAACAACAGCAAGCACA---------ACAACAGGCTAGCAAAATCTCATATCGTGGCATTTTCACCACCACAGGCAACGC------------GATGAATGCA-----GCAGC---------------CGCC---GCCGCCGCCGCAGCAGCAGCAGCCCAGCAGCAACAGCAACAACAGCAGCAGCAG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCTACAA---CTCCAACA---A------CAA---CAGCAACAACA------------ACA---ACAAC---AG------------CAGC------------------AACACCA------------ACAGCCGCTACAC---CA------ACAACAGCAATTGCAACACCAGCAGCAGCAA------------------------------CAACAACAACACCAACAACACTATCAGCAACATGCCATCCAA------------------------CAACAGGCTAGCAAAATCTCATATCGTGGCATTTTCACCACCACAGGCAACGC------------AATGAATGCA-----GCAGC---------------AGCCGCCGCAGCA------------GCGGCCCAGCAGCAA------------CAGCAGCAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ACTACAA---CTCCAACA---A------CAA---CAGCAAC------------------------AAC---AG------------CAGC------------------AACACCAAC---------AACAGCCGCTACAC---CA------ACAACAGCAACTGCAACACCAGCAGCAA---------------------------------CAACA---CCAACAACAACACTATCAGCAACATGGCATTCAA------------------------CAACAGGCTAGCAAAATCTCATATCGTGGCATTTTCACCACCACAGGCAACGC------------GATGAACGCG-----GCAGC---------------CGCC---GCAGCAGC---------AGCTGCCCAGCAG---------------CAGCAACAG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ACTACAA---CTCCAACA---ACAA---CAA---CAGCAACATCA------------ACT---ACAAC---AG------------CAGC------------------AACACCAAC---AAC---AACAGCCGCTACAC---CA------ACAACAGCAATTGCAACACCAGCAGC---------------------------------AAC---------ACCAACAACACTATCAACAACATGCCCTTCAACAA---------CA---------ACAACAGCCTAGCAAAATCTCATATCGTGGCGTTTTCACCACCACAGGCAACGC------------GATGAGTGCA-----GCAGC---------------CGCC---GCAGCAGC---------AGCAGCC------------------------CAACAG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACTACAA---CTCCAACA---ACAACAACAA---CAGCAACATCA------------ACA---ACAAC---AG------------CAGC------------------AACACCAAC---------AACAGCCGCTACAC---CA------ACAACAGCAATTGCAACACCAGCAGC---------------------------------AAC---------ACCAACCACACTATCAACAACATGCCATCCAACAACAA------CA---------ACAACAGGCTAGCAAAATCTCATATCGTGGCGTTTTCACCACCACAGGCAACGC------------GATGAACGCA-----GCAGC---------------CGCC---GCAGCAGC---------AGCAGCCCAA---------------------CAGCAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCTACAA---CTCCAACA---ACAA---CAA---CAGCAACAACA------------TCA---ACAAC---AG------------CAGCA------------ACAACAACACCAAC---------AACAGCCGCTACAC---CAACAACAACAACAGCAATTGCAACACCAGCAGC---------------------------------AAC---------ACCAACAACACTATCAGCAACATGCCATCCAACAACAA------CA---------ACAACAGGCTAGCAAAATCTCATATCGTGGCGTTTTCACCACCACAGGCAACGC------------GATGAATGCA-----GCAGC---------------CGCC---GCTGCAGCCGCA------GCAGCACAA------------------CAGCAGCAG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACTCCAACATC---AACA---C------CAACAACAACAGTT---------------ACAACAACAAC---AG------------GACC------------------CACACCAAC---------AACAGCCGCTACAC---CA------ACAGCAGCAGCTGCAGCATCAACAGC---------------------------------AAC---------ACCAACAACACTACCAACAACATGCCATCCAACAC---------------------CAACAGGCTAACAAAATCTCATATCGTGGCATTTTCACCACCACAGGCAACGC------------CATGAACGCA-----GCAGC---------------AGCC---GCCGCAGC---------AGCTGCC------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AGT--------TCCAACA---A------CAA---CAGCAACATC---------------C---ACAAC---AA------------CAGC------------------AACACCAAC---------AACAGCCCCTACAC---CAGCAGCAACAACAGCAACTCCAACACCAGCAGC---------------------------------AAC---------ACCAACAACACTATCA---ACATGCCATCCAACAACAG------CA---------GCAACAGGCTAGCAAAATCTCATATCGTGGAATTTTTACCACCACAGGCAACGC------------GATGAATGCA-----GCAGC---------------CGCA---------GCCGCA------GCGGCG------------------------CAACAG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

GCTACAACAAC---ACCA---A------CAA---CAGCAACAACA------------TCC---ACAAC---AG------------CAGC------------------AACACCAAC---AACAACAACAGCCGCTACAC---CAGCAGCAACAACAGCAACTCCAACACCAGCAGC---------------------------------AAC---------ACCAACAACACTATCA---ACATGCCATCCAACATCAG------CA---------GCAACAGGCTAGCAAAATCTCATATCGTGGCATTTTTACCACCACAGGCAACGC------------GATGAACGCC-----GCAGC---------------CGCA---GCAGCA------------GCGGC---------------------------GCAA	Size	Hit Count	Total Norm	Total
No Reads

dp5

TCTACAGCAAC---AACA---A------CAA---ACTCAACAACAACACCAACAATCTCA---------------------------AC------------------AACAGCTGC---------AACAACAGCAACAC---CA------ACATCAACAGCTGCAACACCAACAACAACAG------------------------------CAACTCCAACAACACCAACACTTTCAACAACAAG---TACAACAA---------CA---------ACAACAAACTGGCAAAATCTCATATCGTGGCATTTTCACCACAACAGGAAACGC------------AATGAATGCC-----GCAGCAGC------------AGCC---GC---------------GGCTGCCCAACAGCAGCAGCAGCAGCATCAGGCGCAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................................................................................................................................................................................TGGCAAAATCTCATATCGTGGCATT................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCAGCATC........	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

TCTACAGCAAC---AACA---A------CAA---ACTCAACAACAACACCAACAATCTCA---ACAAC---AG------------CTGC------------------------------------------AACAACAG---CA------ACATCAACAGCTGCAACACCAACAACAACAG------------------------------CAACTCCAACAACACCAACACTTTCAACAACAAG---TACAACAA---------CA---------ACAACAAACTGGCAAAATCTCATATCGTGGCATTTTCACCACAACAGGAAACGC------------AATGAATGCC-----GCAGCAGC------------AGCC---GC---------------GGCTGCCCAACAGCAGCAGCAGCAGCATCAGGCGCAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

GCAACAACAGC---AGCAACAA------CAA---CAGCAGCAAC---------------A---ACAAC---AG------------CAACAGC---------------AACAACA------------ACAGCAGCAGCAA---CA------ACAACAGCAGCAACAACAACAGCTGCAGCAGCAA---------------------------CAGCA---ACAACAGCAGCAGCAACAGCAACAGC---AACAACAGCAGCAACAACA---------ACAGCAG--CAGCAACAAC--------------------------AGCAACAGC------------AACAACAACA-----GCAGCAACAACAGCAACAGCAACA---ACAGCAGC-----------------------------AGCAGCAGCAACTGCAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
....................................................................................................................................................................AACAACAGCTGCAGCAGCA...............................................................................................................................................................................................................................................................	19	4	0.25	1	0	0	0	1	0
....................................GCAGCAAC---------------A---ACAAC---AG------------CA...............................................................................................................................................................................................................................................................................................................................................................	18	20	0.15	3	0	0	0	3	0
...............................................................................................................................................................................................................................................................GCAGCAACAACA---------ACAGCA............................................................................................................................................................	18	20	0.15	3	0	0	0	3	0
.........GC---AGCAACAA------CAA---CAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.15	3	0	0	0	3	0
.............................................................................................................................................................................................................................................................................................................................................................ACA-----GCAGCAACAACAGCAACAGC.............................................................	23	7	0.14	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................ACA---------ACAGCAG--CAGCAACAAC--------------------------.....................................................................................................................	20	20	0.10	2	0	0	0	0	2
.....................................................................................................................................................................................................................................................................................CAGCAG--CAGCAACAAC--------------------------AGCA.................................................................................................................	20	20	0.10	2	0	2	0	0	0
.................................................................................................................................................................................................................................................................................................................................AGCAACAGC------------AACAACAACA-----GCAGCA...........................................................................	25	20	0.10	2	0	2	0	0	0
.......................................................................AG------------CAACAGC---------------AACAACA------------ACAGCAGCA...............................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0
........................................................................................................................................CAA---CA------ACAACAGCAGCAACAACA..............................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	2	0
.........................................................................................................................................................................................................................................................................................................................................C------------AACAACAACA-----GCAGCAACAACA.....................................................................	23	20	0.10	2	0	0	0	2	0
......................................................................................................................................................................................................................................AGCAACAGCAACAGC---AACAACAGCAGCA.................................................................................................................................................................................	28	10	0.10	1	0	1	0	0	0
................CAACAA------CAA---CAGCAGCAAC---------------A---ACA....................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	2	0
...............................................................................................................ACA------------ACAGCAGCAGCAA---CA------AC..............................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	2
..................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC-----------------------------AGCAGCAGCAACTGCA.	22	17	0.06	1	0	1	0	0	0
...............................................................................................................................................................................CAGCAGCAA---------------------------CAGCA---ACAACAGCAG.................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
........AGC---AGCAACAA------CAA---CAGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................CAGCAA---------------------------CAGCA---ACAACAGCAGCAGCAA...........................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................AGCAGCAACAACA---------ACAGCAG--.........................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................AA---------------------------CAGCA---ACAACAGCAGCAGCAACA.........................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
....................................GCAGCAAC---------------A---ACAAC---AG------------CAACAGC---------------...........................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................ACAGCAGCAACAACA---------ACAGCA............................................................................................................................................................	21	20	0.05	1	0	0	0	0	1
............................................................................................................ACAACA------------ACAGCAGCAGCAA---........................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................C---AACAACAGCAGCAACAACA---------AC................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
..............................A---CAGCAGCAAC---------------A---ACAAC---AG------------CA...............................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1
........................................................................G------------CAACAGC---------------AACAACA------------ACAGC...................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................CAACAGC------------AACAACAACA-----GCA..............................................................................	20	20	0.05	1	0	0	0	1	0
...........................................................................................................AACAACA------------ACAGCAGCAGCAA---........................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1
............................................................................................................ACAACA------------ACAGCAGCAGCAA---CA------................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................AACA---------ACAGCAG--CAGCAACAA................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................A---------ACAGCAG--CAGCAACAAC--------------------------AGCAACA..............................................................................................................	25	20	0.05	1	0	0	1	0	0
.........................................AAC---------------A---ACAAC---AG------------CAACAGC---------------AACAACA------------AC......................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................GCAACAGC------------AACAACAACA-----GC...............................................................................	20	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................AACAGCAGCAGCAACAGCA......................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1
..............................................................................................................................................................................................................................................CAACAGC---AACAACAGCAGCAACA..............................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
....CAACAGC---AGCAACAA------CAA---CAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
......................................................................................AACAGC---------------AACAACA------------ACAGCAGCAGCA............................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................AGCAA---------------------------CAGCA---ACAACAGCAG.................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................CAACAGCAGCAACAACA---------ACAGCAG--C........................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................AACAGC------------AACAACAACA-----GCAGCA...........................................................................	22	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACA---ACAGCAGC-----------------------------AGCA.............	22	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAGCAACA---ACAGCAGC-----------------------------AGCA.............	29	20	0.05	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACA---ACAGCAGC-----------------------------AGC..............	22	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................AACAGC------------AACAACAACA-----GCAGCAACA........................................................................	25	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACA---ACAGCAGC-----------------------------AGCAGCAG.........	27	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................AACAACA-----GCAGCAACAACAGC...................................................................	21	20	0.05	1	0	0	0	1	0
.............................................................................................................CAACA------------ACAGCAGCAGCAA---CA------ACA.............................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
......................................................................................AACAGC---------------AACAACA------------ACAGCAGCA...............................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................AACA---------ACAGCAG--CAGCAACAAC--------------------------.....................................................................................................................	21	20	0.05	1	0	0	1	0	0

droVir3

CCACCAACATC---AACA---C------CAA---CAGCAACATC---------------------------AGCAACACCAACAGCAGC------------------AACA---------------------ACAACAC---CA------ACAACAGCAACAACAACAACAACAGCAGC------------------------------AAC---------AACAGCAACACTATCAACAACATGCACTACAGCAGCAACAACAACAACACCAACAACAACTGCCTGGCAAAATCTCATATCGCGCCATTTTCACCACGACAGGCAACGCTAACAACAATACAATGAGCGCCGCACAGCAAC---------------TACA---GCAGCAAC-----------------------------------AACAGCAGCAG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.............................................................................................................CA---------------------ACAACAC---CA------ACAACAGCAACAACA.................................................................................................................................................................................................................................................................................	26	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................GCAGCAACAACAACAACACC......................................................................................................................................................................	20	14	0.14	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................AGCAGCAACAACAACAACACCA.....................................................................................................................................................................	22	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................AGC------------------AACA---------------------ACAACAC---CA------ACAAC...........................................................................................................................................................................................................................................................................................	21	10	0.10	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................AGCAACACCAACAGCAGC------------------A..........................................................................................................................................................................................................................................................................................................................................	19	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................GC------------------AACA---------------------ACAACAC---CA------ACAACA..........................................................................................................................................................................................................................................................................................	21	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................AACAACAACAGCAGC------------------------------AAC---------AACAGCAACA...............................................................................................................................................................................................................	28	19	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................CAACAACAACAACAACAGCAGC------------------------------AAC---------A........................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................AACAC---CA------ACAACAGCAACA....................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................CAACAACAACAGCAGC------------------------------AAC---------.........................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................AACAACAACAACAACAGCAGC------------------------------AA...................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................CAACAGCAGC------------------AACA---------------------ACAACA............................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................AACAACAACAGCAGC------------------------------AAC---------AACAGCA..................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................ACAGCAGCAACAACAACAACA........................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................GCAACAACAACAACAACAGCA.....................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................CAACAACAACAACAACAGCAG....................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................ACAACAACAACAACAGCAGC------------------------------AAC---------AACA.....................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GCAGCAGCAGC---AACAGCAG------CAG---CAGCAGCAGC---------------A---ACAGC---AG------------CAAC------------------AGCAGCAAC---------AGCAGCAGCAGCAG---CA------ACAGCAGCAGCAGCAACAACAGCAGCAGCAACAACATCAGCAG---------------CAGCAGCAACATCATCATCAGCAGCAGCAGCAACATC---AGCAGCAGCAG------CA---------GCAGC-----AGTGGCATCAGCAGCAGCAGCAACATCAGCAGCAGCAGCAGCAA------------CATCA--GCA-----GCAGC---------------AGCA---GCAGCAGC-----------------------------AGCAGCAGCAGCAGCAG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.......................................................................................................................................................................................................................AACATCATCATCAGCAGCAGCAGCAA.....................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	1
............................................................................................................................................................................................................................CATCATCAGCAGCAGCAGCAACATC---A.............................................................................................................................................................................................	26	2	0.50	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................ATCATCAGCAGCAGCAGCAACAT..................................................................................................................................................................................................	23	3	0.33	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................TCAGCAGCAGCAGCAACATC---AGCA..........................................................................................................................................................................................	24	3	0.33	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................TCAGCAGCAGCAGCAACATCAGCA.........................................................................................................................	24	3	0.33	1	0	0	0	0	1	0
.............................................................................................................................................................................AGCAGCAACAACATCAGCAG---------------C.....................................................................................................................................................................................................................................	21	7	0.29	2	2	0	0	0	0	0
...................................................................C---AG------------CAAC------------------AGCAGCAAC---------AGCAGC...................................................................................................................................................................................................................................................................................................................	22	20	0.25	5	0	0	0	0	5	0
...........................................................................................................................................................AGCAGCAGCAACAACAGCAGCA.....................................................................................................................................................................................................................................................................	22	20	0.15	3	3	0	0	0	0	0
...GCAGCAGC---AACAGCAG------CAG---CAGC................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	2	0	0	0	0	0
.................................................................................................................AAC---------AGCAGCAGCAGCAG---CA------AC..............................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	2	0
...................................................................................................................................................................................................................................................................................................................................................................................................GCAGC-----------------------------AGCAGCAGCAGCAGCAG	22	20	0.10	2	2	0	0	0	0	0
.....................................................................................................................................................................ACAACAGCAGCAGCAACAACA............................................................................................................................................................................................................................................................	21	20	0.10	2	2	0	0	0	0	0
.......................................GCAGC---------------A---ACAGC---AG------------CAAC------------------AGCAGCAAC---------.........................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	2
...................................................................................................................................................................CAACAACAGCAGCAGCAACAAC.............................................................................................................................................................................................................................................................	22	20	0.10	2	2	0	0	0	0	0
..............................................................................................................................GCAGCAGCAGCAG---CA------ACAGC...........................................................................................................................................................................................................................................................................................	20	20	0.10	2	2	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................AGCA---GCAGCAGC-----------------------------AGCAGCAG.........	20	20	0.10	2	2	0	0	0	0	0
...........................................................................................................AGCAGCAAC---------AGCAGCAGCAGC.............................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	2	0
.................................................................................................................................................................................GCAACAACATCAGCAG---------------CAGC..................................................................................................................................................................................................................................	20	13	0.08	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACATCAGCAGCA......................................................................................................................	25	15	0.07	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................AGCAGCAGCAGCAACATC---AGCAGCA.......................................................................................................................................................................................	25	15	0.07	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAA------------CATCA--GCA-----GCA..............................................................................	25	15	0.07	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAA------------CATCA--GCA-----GC...............................................................................	24	16	0.06	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACATCAGCAGC.......................................................................................................................	24	16	0.06	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................AGCAGCAGCAGCAACATC---AGCAGC........................................................................................................................................................................................	24	16	0.06	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAA------------CATCA--GCA-----.................................................................................	24	17	0.06	1	1	0	0	0	0	0
.......................................................................................................................................GCAG---CA------ACAGCAGCAGCAGCAACAACAGC.........................................................................................................................................................................................................................................................................	29	18	0.06	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................ATCAGCAGCAGCAGCAGCAA------------C...............................................................................................	21	20	0.05	1	1	0	0	0	0	0
......................................................................................AAC------------------AGCAGCAAC---------AGCAGCA..................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
.....................................CAGCAGC---------------A---ACAGC---AG------------CAAC------------------A..........................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................C---AGCAGCAGCAG------CA---------GCAGC-----AGTGGC..................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................CAACATCAGCAG---------------CAGCAGCA..............................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................AGCAA------------CATCA--GCA-----GCAGC---------------AGCA---G.....................................................	23	20	0.05	1	0	0	0	0	0	1
...........................................................................................................AGCAGCAAC---------AGCAGCAGCAGCAG---CA------ACA.............................................................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
................................................................................................................................AGCAGCAGCAG---CA------ACAGCAGCAGC.....................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................AACAACATCAGCAG---------------CAGCAGC...............................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................A------ACAGCAGCAGCAGCAACAACAGCA........................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
...................................AGCAGCAGC---------------A---ACAGC---AG------------CAAC------------------AGC........................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................GCAGCAGCAACAACAGCAG.......................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................AGCAGCAGCAACAACAGCAGCAGCAA.................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................CAACATCAGCAGCAGCAGCAGC..............................................................................................................	22	20	0.05	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................AGCAACATC---AGCAGCAGCAG------CA---------G.................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................GCAGCAGCAACATC---AGCAGC........................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................GCAGCAA------------CATCA--GCA-----GCAGC---------------AGC..........................................................	23	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................CAA------------CATCA--GCA-----GCAGC---------------AGCA---GC....................................................	22	20	0.05	1	0	0	0	0	0	1
...............................................................................................................................................A------ACAGCAGCAGCAGCAACA..............................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................AGCAACATC---AGCAGCAGCAG------CA---------GCA...............................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................GCAGCAACATCAGCAGCAGCAGC.................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
.....AGCAGC---AACAGCAG------CAG---CAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................ATCATCAGCAGCAGCAGCA......................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
...................................................................C---AG------------CAAC------------------AGCAGCAAC---------AGCAGCAGCAG..............................................................................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................CAACATC---AGCAGCAGCAG------CA---------GC................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1
....................AG------CAG---CAGCAGCAGC---------------A---ACAGC---...............................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
..................................................................................................................AC---------AGCAGCAGCAGCAG---CA------ACAGCA..........................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................GCAGCAGCAGCAG---CA------ACAGCA..........................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................AGCAACATCAGCAGCAGCAGCAG...............................................................................................................	23	20	0.05	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................AGCAACATCAGCAGCAGCAGCAGCA.............................................................................................................	25	20	0.05	1	0	0	0	0	1	0
.CAGCAGCAGC---AACAGCAG------CAG---C...................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................GCAGCAACATC---AGCAGCAGCAG------C............................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................GCAGCAGCAACATCAGCAGC.......................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................GCAGCAGCAA------------CATCA--GCA-----GC...............................................................................	20	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................AGCAA------------CATCA--GCA-----GCAGC---------------AGCA---GCA...................................................	25	20	0.05	1	0	0	0	0	1	0
..............................................................................................................AGCAAC---------AGCAGCAGCAGCAG---CA------AC..............................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
......................................................................................AAC------------------AGCAGCAAC---------AGCAGCAGCAGCAG---C.......................................................................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0

droGri2

CCAACAACATC---AGCA---A------CAA------------C---------------A---CCAACAACAGCAACACCAACAGCAGC------------------AGCAACAACAACAAC---AACAACACCTACAA---CA------------ACAGCAGCAACAACAGCAACACCAA---------------------------CAAC---------AACAGCAACACTATCAACAACATGCACTACAACAACAACAC---CA---------ACAACTGCCTGGCAAAATCTCATATCGCGGCATTTTCACCACCACAGGCAACAACAACAGCAACAACATGAGCGCCGCACAGCAA--------------------------------------------------------------------CTACAACAG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..............................................................................................................................................................................ACACCAA---------------------------CAAC---------AACAGCAACA...............................................................................................................................................................................................................	21	20	0.05	1	0	1

dsi_25036

3r:7321956-7322105 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-17.6	-17.3	-17.3