ID:

dsi_25034

 Coordinate:

2r:5647690-5647808 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-3.8 -3.6

Flybase annnotation

CDS [2r_5647604_5647654_-]; five_prime_UTR [2r_5647655_5647689_-]; five_prime_UTR [2r_5647484_5647689_-]; five_prime_UTR [2r_5647809_5648002_-]; exon [2r_5647809_5648002_-]; exon [2r_5646426_5647689_-]; exon [2r_5647809_5648002_-]; exon [2r_5647604_5647689_-]; five_prime_UTR [2r_5647809_5648002_-]; intron [2r_5647690_5647808_-]; intron [2r_5647690_5647808_-]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------##################################################
CGGTTAATCAGAGAGCGCCGAGCACTAAAGTTCCCATTGCCAAACGAAACGTAAGTGATAAAGAACGCCAGCAATGAGCGAACAAGAGCAGAGCGCACGCAGACGGGGAAAAATCAATTGATGTTATGTAAGCTCGAATAACCGGATACCGTGTCTACTACTGTTGCAGGTCCCCATTCGCTCGATTTGGAACTGGAACGGACCATGAAAACAAGCAAT
**************************************************...............(((((....)).)))...............**************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 O001
Testis
 O002
Head
 GSM343915
embryo
 M053
female body
 SRR1275487
Male larvae
........................................................................................................................................................................................ACTTAGAACTGGTACGGAC................ 19 3 12 21.33 256 92 136 7 4 4 0 6 0 0 1 0 0 1 4 1
..........................................................................................................................................................................................TTAGAACTGGTACGGAC................ 17 2 6 4.33 26 0 0 9 6 0 1 10 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TGGAACGGACCATGAAAACAAGCAA. 25 0 1 4.00 4 0 0 0 0 0 0 0 1 3 0 0 0 0 0 0
.......................................................................................................................................................................................GACTTAGAACTGGTACGGAC................ 20 3 1 4.00 4 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................GAACTGGTACGGACC............... 15 1 3 3.33 10 0 0 10 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................CTGGAACGGACCATGAAAACAAGCA.. 25 0 1 3.00 3 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................GATTTGGAACTGGAACGGACCATGAAAAC....... 29 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................CTGGAACGGACCATGAAAAC....... 20 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
...TTAATCAGAGAGCGCCGAGCACTAAAG............................................................................................................................................................................................. 27 0 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GAACGGACCATGAAAACAAGC... 21 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGTGATAAAGAACGCC...................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TGAGCGAACAAGAGCAGAGCG............................................................................................................................ 21 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0
...TTAATCAGAGAGCGCCGAGCACTAAAGT............................................................................................................................................................................................ 28 0 1 2.00 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CGCTCGATTTGGAACTGG....................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................GAACTGGTACGGACAA.............. 16 2 20 1.60 32 0 0 22 5 0 0 4 0 0 0 0 0 0 0 1
............................................................................................................................................................................CCCATTCGCTCGATTTGGAACTGGAA..................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TTTGGAACTGGAACGGACCATGAAAA........ 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TGGAACGGACCATGAAAACAAGCAAT 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................GTCTACTACTGTTGCAGGTCCC............................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ACGGACCATGAAAACAAGCAA. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................GGAACTGGAACGGACCA.............. 17 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................CGTCCCCATTCGCTCGATTTGGA............................ 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AACGGACCATGAAAACAA..... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..GTTAATCAGAGAGCGCC........................................................................................................................................................................................................ 17 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GAACGGACCATGAAAACAA..... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................ATTTAGAACTGGTACGGAC................ 19 2 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................AAAGTTCCCATTGCCAAAC.............................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................AGCTCGAATAACCGGATACCG.................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GTGATAAAGAACGCCAGCAAT................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................CGAAACGTAAGTGATAAAGAAC......................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TTTGGAACTGGAACGGACCATGAAAACA...... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...TTAATCAGAGAGCGCCGAGCAC.................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................TACCGTGTCTACTACTGTTG..................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........GAGAGCGCCGAGCACTAA............................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AACGGACCATGAAAACAAGC... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................CCGGATACCGTGTCTACTACTG........................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................AACGTCCCCATTCGCTCGATTTGGAA........................... 26 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........GAGAGCGCCGAGCACT................................................................................................................................................................................................. 16 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TCTACTACTGTTGCAGGTCCC............................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................GCCAAACGAAACGTAAGTGAT................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................ATGTAAGCTCGAATAACCGGG......................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.GGTTAATCAGAGAGCGCC........................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................ACGCCAGCAATGAGCGAAC........................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................CGTGTCTACTACTGTTGCAGGTCCC............................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTCGCTCGATTTGGAACT......................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TTATGTAAGCTCGAATAACCGG.......................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................CTGGAACGGACCATGAAA......... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ATTCGCTCGATTTGGAACTGGAACGG.................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................ATACCGTGTCTACTACTG........................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ACGGACCATGAAAACAAG.... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TACCGTGTCTACTACTGTTGC.................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................CTGGAACGGACCATGAAAACAAGC... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................CATTCGCTCGATTTGGAACTGGAACGGA................. 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................TGAGCGAACGAGAGCAGAGCG............................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................GAACTGGCACGGACC............... 15 1 8 0.75 6 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TTAGAACTGGTACGGACG............... 18 3 20 0.50 10 1 8 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................CTTAGAACTGGTACGGACCA.............. 20 3 4 0.50 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GTAAGCTAGTAAAACCGGATA....................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................ACTTAGAACTGGTACGGACC............... 20 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TCGACTTAGAACTGGTACGGA................. 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................CGACTTAGAACTGGAACGGA................. 20 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................CTAAGCTAGAAAAACCGGATA....................................................................... 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TAGAACTGGTACGGACC............... 17 2 5 0.40 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................ACTGGAACGGACCTTGAGA......... 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................CTTGGAACTGGTACGGAC................ 18 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................GCCAACGAAACGTAAGTGAT................................................................................................................................................................ 20 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TCAACTTAGAACTGGAACGGAC................ 22 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................ATTTAGAACTGGTACGGACG............... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................CGACTTAGAACTGGTACGG.................. 19 3 9 0.22 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TCAACTTAGAACTGGAACGGA................. 21 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................AACTTGGAACTGGTACGGAC................ 20 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................CTGGAACGTACCTTGAAAAAA...... 21 3 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........AGAAAGCCGAGCACTACAGT............................................................................................................................................................................................ 20 3 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................TAGGTGATATAGCACGCCA..................................................................................................................................................... 19 3 10 0.10 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................AACTGGCACGGACCA.............. 15 1 12 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AGAACTGGCACGGACCA.............. 17 2 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................TTTAGAACTGGTACGGACA............... 19 3 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........GAGAACGCCGTGCAGTAAA.............................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................AGAACTGGTACGGACC............... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................CGACTTAGAACTGGTACG................... 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GTTAGAACTGGTACGGAC................ 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GCCAATTAGTCTCTCGCGGCTCGTGATTTCAAGGGTAACGGTTTGCTTTGCATTCACTATTTCTTGCGGTCGTTACTCGCTTGTTCTCGTCTCGCGTGCGTCTGCCCCTTTTTAGTTAACTACAATACATTCGAGCTTATTGGCCTATGGCACAGATGATGACAACGTCCAGGGGTAAGCGAGCTAAACCTTGACCTTGCCTGGTACTTTTGTTCGTTA
****************************************************************************************************************************...............(((((....)).)))...............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
.CCAATTAGTCTCTCGCGGCTC..................................................................................................................................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0
..............CGCGGCTCGTGATTTCAAGG......................................................................................................................................................................................... 20 0 1 3.00 3 3 0 0 0 0 0 0 0 0
................................................................................TTGTTCTCGTCTCGCGTGCGTCTGCCC................................................................................................................ 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0
........................GATTTCAAGGGTAACGGTTT............................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.....................................................................................................................................................GCGCAGATGATGGCAACTTCC................................................. 21 3 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................GGTAAGCGAGCTGAAC.............................. 16 1 2 1.00 2 0 0 0 0 0 1 1 0 0
......................................................CACTATTTCTTGCGGTCGTTA................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................CACTATTACTTGCGGTCGTTA................................................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................CGGTCGTTACTCGCTTGTTCT.................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................AGCTGATTAGCCTATGGCAC.................................................................. 20 2 1 1.00 1 0 0 1 0 0 0 0 0 0
.....TTAGTCTCTCGCGGCTCGTG.................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................TTGGGGTAAGCGAGCTAAACC............................. 21 2 1 1.00 1 0 0 0 0 1 0 0 0 0
...........TCTCGCGGCTCGTGATTTCAAGGG........................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................CGTGATTTCAAGGGTAACGG.................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..............TGCGGCTCGTGATTTCAAGGG........................................................................................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
...........TCTCGCGGCTCGTGATTTCAA........................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................GACCAGGGGCAAGCGAGC................................... 18 2 3 0.67 2 0 0 2 0 0 0 0 0 0
.........................................................................................................CCCTTTTTAGTTACCCACA............................................................................................... 19 2 3 0.33 1 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................CAGGCGTAAGCGAGC................................... 15 1 6 0.17 1 0 0 0 0 0 0 0 1 0
.................................................................................................................................................AATGGCATAGATGAGGACA....................................................... 19 3 6 0.17 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................CAGGGGAAAGCGAGC................................... 15 1 6 0.17 1 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................TGTTGACGTTGCCTGGTACTT.......... 21 3 9 0.11 1 0 0 0 1 0 0 0 0 0
..............CGCTGCTCGTGATGCCAAG.......................................................................................................................................................................................... 19 3 10 0.10 1 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................ATGATGACAACGTCGAGGT............................................. 19 2 12 0.08 1 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................CGACCAGGGGCAAGCGA..................................... 17 2 16 0.06 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................AGGGGTAAGCGAGCG.................................. 15 1 19 0.05 1 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................GGTAAGCGAGCTGAA............................... 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0

Generated: 04/23/2015 at 08:35 PM