ID:

dsi_25018

 Coordinate:

3l:9835202-9835351 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.8 -9.3 -9.3

Flybase annnotation

CDS [3l_9834922_9835171_-]; five_prime_UTR [3l_9835172_9835214_-]; exon [3l_9834922_9835214_-]

No Repeatable elements found

Sense Strand Reads

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------###############################################################
ACCATTTACTGAAATAGATGCCGCCCCCTAGTGATAAGGGGTTGAATCCGCACTTGATTATCAGTTGGGCAAGGCTCGATAGCAGCGCACATAAATATCATTTGGCCAGCCCCCGTATTAGCCAGTTTCAAATCGACCTCTACCGGAGCAGGTTGTCTTCGTAATAGAGTGAAAAAGATACAAAGCATTCGGAAATGCAGAACGATAAGTTTGCCCCACCGCCGTTGGCCATGCAAAACGACAAGTACCC
**************************************************************************************************************************************........(((((((....((((((...............))))))....)).))))).....***************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 M053
female body
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
.........................................................................................................................................................................................CATTCGGAAATGCAGAAC............................................... 18 0 1 2.00 2 0 2 0 0 0 0
..........................................................................................................................................................................................ATTCGGAAATGCAGAACGATAAGTT....................................... 25 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................AGTTTGCCCCACCGCCGTTGGCCATGC................ 27 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................AGCATTCGGAAATGCAGAACGATAAGT........................................ 27 0 1 1.00 1 0 0 1 0 0 0
...................................................................................................................................................................................ACAAAGCATTCGGAAATG..................................................... 18 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................ATTCGGAAATGCAGAACGATAAGT........................................ 24 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................GACCTCTACCGGAGCAGGTTGTCTTCGT........................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................CAAATCGACCTCTACCGGAGC..................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
.....................................................................................................................................................AGGCTGTCTTCGTAATAGAGTGAAAA........................................................................... 26 1 1 1.00 1 0 0 0 1 0 0
..............................................................................................................................TTCAAATCGACCTCTACCGGA....................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
................................................................TAGGACAAGGCTCGATGGCAG..................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 1
.................................................................................................................................................................................................................TGTGCATCACCGCCGTTGGCCA................... 22 3 4 0.25 1 0 0 0 0 1 0
.......................................GGTTGAATCCGGTCTGGAT................................................................................................................................................................................................ 19 3 12 0.08 1 0 0 0 0 1 0

Anti-sense strand reads

TGGTAAATGACTTTATCTACGGCGGGGGATCACTATTCCCCAACTTAGGCGTGAACTAATAGTCAACCCGTTCCGAGCTATCGTCGCGTGTATTTATAGTAAACCGGTCGGGGGCATAATCGGTCAAAGTTTAGCTGGAGATGGCCTCGTCCAACAGAAGCATTATCTCACTTTTTCTATGTTTCGTAAGCCTTTACGTCTTGCTATTCAAACGGGGTGGCGGCAACCGGTACGTTTTGCTGTTCATGGG
*****************************************************........(((((((....((((((...............))))))....)).))))).....************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR902009
testis
 M025
embryo
 SRR618934
dsim w501 ovaries
....AGATGACTTTATCTA....................................................................................................................................................................................................................................... 15 1 13 0.69 9 9 0 0 0 0 0
....AAATGTCTTTATCAACGGCGT................................................................................................................................................................................................................................. 21 3 5 0.40 2 2 0 0 0 0 0
.........................................................................................................................................................................................................................................GTTCTGCTGTTCATG.. 15 1 10 0.10 1 0 1 0 0 0 0
.................................................................................................................................................................................................................AACCGGGGTGGCGGC.......................... 15 1 13 0.08 1 0 0 1 0 0 0
.........................................................................................................................................GAGATGGCCTGGTCCG................................................................................................. 16 2 14 0.07 1 1 0 0 0 0 0
.................................................................................................................................................................................................................AACCGGGGTGGCGGCAC........................ 17 2 14 0.07 1 0 0 0 1 0 0
.........................................................................CGAGGTATCGTAGAGTGTA.............................................................................................................................................................. 19 3 18 0.06 1 0 0 0 0 1 0
..........................................................................................................CTCAGGGTCATAATCGGTC............................................................................................................................. 19 3 19 0.05 1 0 1 0 0 0 0
....................................................................................................................................................................................................................................GGTAAGTTTTGCTGT....... 15 1 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:9835152-9835401 - dsi_25018 ACCATTT-AC---TGAAATAGATGCCGCCCC-CTAGTGATAAG-------GGGTTGAA-TCCGCACTTGATTATCAGTTGGGCAAGGCTCGATAGCAGCG--CACATAAATATCATTTGGCCAGCCCCCGTATTAGCCAGTTTCAAATCGACCTCTACCGGAGCAGGTTGTCTTCG---TA-ATAGAGT---------GAAAAA--GA------TACAAAGCATTCGGAAATGCAGAACGATAAGTTTGCCCCACCGCCGTTGG-------------------------CCATGCAAAACGACAAGTACCC
droSec2 scaffold_0:2306821-2307070 - dse_404 ACCATTT-AC---TGAAATAGATGCCGCCCC-CTAGTGATAAA-------GGGTTGAA-TCCGCACTTGATTATCAGTTGGGCAAGGCTCGATAGCAGCG--CACATAAATATCATTTCGCCAGCCCCCGTATTAGCCAGTTTCAAATCGACCTCTACCGGAGCCGGTTGTCTTCG---CA-ATAGAGT---------GAAATA--GA------TACAAAGCGATCGGAAATGCAGAACGATAAGTTTGCCCCACCGCCGTTGG-------------------------CCATGCAAAACGACAAGTACCC
dm3 chr3L:10091082-10091331 - AGCATTT-AC---TGAAATAGATGCCGCCCC-CTAGTGATAAG-------GGATTGAA-TCCGCACTTGATTATCAGTTGGGCAAGGCTCGATAGCAGTG--CACATAAATATCATTTGGCCAGCCCCCGTATTAGCCAGTTTCAAATCGACCTCTACCGGAGCAGTTTGTCTTCG---CA-ATAGAGT---------GAAATA--GA------TATAAAGCGATCGGAAATTCAGAACGATAAGTTTGCCCCACCGCCGTTGG-------------------------CCATGCAAAACGACAAGTATCC
droEre2 scaffold_4784:10070666-10070884 - ACCATTT-AC---TGAAATCGCTGCCGCCCCCCTAGTG------------------AA-TCCGCACTTGATTATCACTTGGGCAAGGCTCGATAGCATTG--CACATAAATATCATTTGGCCAGCCCCCGTATTAGCCAGTTTCAAATCGACCTCAAACGGAGCAGGTTGTCTTCG---TA-CCGGAGT---------GAAATA--CATACGAGTACAACGCAATCGGAGATGCAGAACGATAAGCTTGCCCCACCGCC----------------------------------------------------
droYak3 3L:10072055-10072274 - dya_756 ACCATTT-AC---TGAAATTGATGCCGCCCC-CTAGTGATTAG-------GCGTTGAA-TCCGCACTTGATTATCAGTTGGGCAAGGCTCGATAGCATTG--CGCATAAATATCATTTGGCCAGCCCCCGTATTAGCCAGTTTCAAATCGACCTCAAACGGAGTAGGTTGTCTTCG---TA-AGAGTGT---------AAAATA--TAT----ATATAACGCGATCGGAAATGCAGAACGATAAGTTTGCCCCA---------------------------------------------------------
droEug1 scf7180000409711:1940501-1940754 - AGCATTT-AC---TGTAATAAGTACCGCGCG-CCAGTGATATG-------CG-TTGGC-CCCGCACTTGATTATCAGTTGGCCCAGGCCCGATCCCGATC--GAAATAAAAATCATTTGCCCATCCACTGTGTTAGCCAGTTTCAAATCGACAGCAAGCCGAGCAGGTTGTCTTCG---T--GGAAAGT---------GAAATA--TATTCGTATATAACGCGATCGACAATGCAGAACGACAAGTTTGCTCCACCGCCGTTGG-------------------------ACAGGCAGAACGACAAGTTTCC
droBia1 scf7180000302428:7676471-7676714 + ACCTTTT-AC---TATAATCGGTGACACCCC--CAAAGATAAG-------GG-TTGGC-CCCGCTCTTTATCATCAATTGGAACTGAGTGTATCCCATAG-ACGTATAAATATCATTTGGCCAGCCGCCGTATTAGCCAGTTTCGAATCGACCTCAAGCGAGGCAGGTTGCCTTTT----A-GCGGAGT---------GAATTT--A----------AACGCGATCGGCAATGCAGAACGACAGATTTGCACCACCGCCGTTGG-------------------------GCACGCAAAACGACAAGTACCC
droTak1 scf7180000415209:93792-94023 - ACCATTT-AC---TGCAATCACTCCCGCCCC-CCAGTGATAAG-------AG--------------TTTGTTATCAGCTCGGCCAGGCTCCATGTCGGCA--GACATAAATATCATTTGGCCAGCTGCCGTATTAGCCAGTTTCAAATCGACCTCAAACTGAGCAGGTTGTCTTCG---T--GCGGAGT---------GAAATA--AA------T----CGCGATCGGCCATGCAGAACGACAAGTTTGCTCCACCGCCGTTGG-------------------------GCATGCAAAACGACAAGTACCC
droEle1 scf7180000490564:896958-897154 - ACCATTT-GC---ACTAATCAACG-----------------------------TTGGC-AACGCTCCCAAATATCAGTTGTGCCAGACCCGATCTCGTTA--TACATAAAAATCAC-TGGCCATCCGACGTTTTGGCCAGTTTCGAATCGACCTCAAACGGAGCAGGTTGCCTCCG---T--GTGGAGA---------GAAATA--AA----------TCGCGATCGACCATGCAGAACGACAAGTTTGCACCACCGCCG---------------------------------------------------
droRho1 scf7180000776514:307112-307332 - ACCATTT-GC---TAAAATCAGCG-----------------------------TTGGC-CCCGCTCACGATTATCAGTTGGGCCGGGACCGATCATTTTA--CACATAAAAACCAGATGGCCAATCGTCGTATCAACCAGTTTCGAATCGACCTCACGCGGAGCAGGTTGTCTTCTTCGT--GTGGAGA---------GAAATA--AA----------TCGCGATCGACCATGCAGAACGACAAGTTTGCACCACCGCCAGTAGGATTTACCTCGGCA-------------------------------CC
droFic1 scf7180000453841:980878-981125 + GCCACTC-AC---TGTAATCAATGATTTT----CAGTGATAAGTGATAAGCA-TAAAC-TCCCCACTCGAGTATCAGTTGTGTTGGGCTCGATCTCGATG--C-CATAAATA-CATTTGGCCATCCGCCCTGTTAGCCAGTTTCGAATCGACCTCAAGCGGAGGAAGTTGCCTTTCT--TT-CTG--GTGGCAAACGTG------------------AAAGCGATCGG-AATGCAGAACGACAAGTTTGCACCACCGCCGTTGG-------------------------CCATGCAAAACGACAAGTACCC
droKik1 scf7180000302334:364564-364769 + GCCTGTCCCC---TCTAATCAATGCCTGGCA-CCTGCGATAAG-------CT-----C-TCCACACTCCAGTATCAGTTGG-CCAGGCCCGATCTCGGTGAAAATATAAAAATCATTCGGCCTGCGGATCCAGTGCCCAGTTATAAATCGACCTCTTGCGAAGACGGTTCGCTTCG---GTAAAAGAGT---------GAAAAG--AA------T------------AGAATGCAGAACGACAAGTTTGGAG-------------------------------------------------------GCCC
droAna3 scaffold_13337:15003651-15003867 - GCCTTTT-AT---TATTGTTGCTACTTTG-----TGTAATCAT-ATT---TCGATAAGCCACTCACTGAAGTGCTGCTTGTGCT-AGCTCGATCTCGAGG---AAATAAAAACCAATTTGACGGCCTACGA-GCGAACAGTTTCGCACCCACCTCGGACTGAGCCGGTTGTCCTCC----A-GTGGAAT---------AAAAAA--TA------T----CAACAGC-AGTATGCAGAACGATAAATTCGCACCACCGCCACT-------------------------------------------------
droBip1 scf7180000395155:931850-932004 - A----------------------------------------------------------------CTCAAGTACCAGGTTGTGCAGGCTCGATCTCGGAG---AAATAAAAACCATTTTGACTGCCTT-TTAGCAAACAGTTTCGAATCCACCTCGTACTGAGCAGGTTGTCCTCC----A-GTGGAAT---------AATAAA--TA------A---CCGCCAC--AGTATGCAGAACGACAAATTCGC-------------------------------------------------------------
dp5 XR_group6:7545691-7545966 + ACCGTTT-GGGTGTCTTATCAATGCCATT---TGAACGATAAG-------CCCAGGTC-CCTCCAACCGACCATCAGTTGGACCAGGCCCAGTCGCAAAA-AGCCACAAAAATCACTTGCCCTGGCATTCGGTCAATCAGTTTGGAATCGAGCCCCAACACGGTCGGTTGTATCCT---CG-AAAAA-----------GAAGCCGAGC------CCCACCGAGGAACATAATGCAAAACGATAAGTTCGCGGCTCCGCCAGCAGGCTTTTCCTCGGCCCCGCCGGCAGGATACCCCCCAC-AGGAATACCC
droPer2 scaffold_27:912486-912761 - ACCGTTT-GGGTGTCTTATCAATGCCATT---TGAACGATAAG-------CCCAGGTC-CCTCCAACCGACCATCAGTTGGACCAGGCCCAGTCGCAAAA-AGCCACAAAAATCACTTGCCCTGGCATTCGGTCAATCAGTTTCGAATCGAGCCCCAACACGGTCGGTTGTATCCT---CG-AAAAA-----------GAAGCCGAGC------CCCACCGAGGAACATAATGCAAAACGATAAGTTCGCGGCTCCGCCAGCAGGCTTTTCCTCGGCCCCGCCGGCAGGATACCCCCCAC-AGGAATACCC
droVir3 scaffold_13049:15862075-15862133 - CGAAAAT-GAACGATAAATA----------------------------------------------------------------------------------------TTTGCCACCTGATCCACCGTCATA----------------------------------------------------------------------------------------------------------------------------------TGGCTTCACATCGGCA---------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACCATTT-AC---TGAAATAGATGCCGCCCC-CTAGTGATAAG-------GGGTTGAA-TCCGCACTTGATTATCAGTTGGGCAAGGCTCGATAGCAGCG--CACATAAATATCATTTGGCCAGCCCCCGTATTAGCCAGTTTCAAATCGACCTCTACCGGAGCAGGTTGTCTTCG---TA-ATAGAGT---------GAAAAA--GA------TACAAAGCATTCGGAAATGCAGAACGATAAGTTTGCCCCACCGCCGTTGG-------------------------CCATGCAAAACGACAAGTACCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................CATTCGGAAATGCAGAAC........................................................................1812.00200200000000000000
..............................................................................................................................................................................................................................ATTCGGAAATGCAGAACGATAAGTT................................................................2511.00101000000000000000
...................................................................................................................................................................................................................................................AGTTTGCCCCACCGCCGTTGG-------------------------CCATGC................2711.00101000000000000000
...........................................................................................................................................................................................................................AGCATTCGGAAATGCAGAACGATAAGT.................................................................2711.00100010000000000000
.......................................................................................................................................................................................................................ACAAAGCATTCGGAAATG..............................................................................1811.00101000000000000000
..............................................................................................................................................................................................................................ATTCGGAAATGCAGAACGATAAGT.................................................................2411.00100100000000000000
.....................................................................................................................................................GACCTCTACCGGAGCAGGTTGTCTTCG---T...................................................................................................................................2811.00101000000000000000
...............................................................................................................................................CAAATCGACCTCTACCGGAGC...................................................................................................................................................2111.00100010000000000000
.............................................................................................................................................TTCAAATCGACCTCTACCGGA.....................................................................................................................................................2111.00100010000000000000
droSec2
ACCATTT-AC---TGAAATAGATGCCGCCCC-CTAGTGATAAA-------GGGTTGAA-TCCGCACTTGATTATCAGTTGGGCAAGGCTCGATAGCAGCG--CACATAAATATCATTTCGCCAGCCCCCGTATTAGCCAGTTTCAAATCGACCTCTACCGGAGCCGGTTGTCTTCG---CA-ATAGAGT---------GAAATA--GA------TACAAAGCGATCGGAAATGCAGAACGATAAGTTTGCCCCACCGCCGTTGG-------------------------CCATGCAAAACGACAAGTACCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................A------TACAAAGCGATCGGAAATGCA............................................................................2216.0060420
...............................................................................................................................................CAAATCGACCTCTACCGGAGC...................................................................................................................................................2116.0062211
....................................................................................................................................................................................A-ATAGAGT---------GAAATA--GA------TACAAAGC.........................................................................................2414.0040400
.............................................................................................................................................TTCAAATCGACCTCTACCGGAGC...................................................................................................................................................2313.0031200
.........................................................................................................................................................................................................................AAAGCGATCGGAAATGCAGAACG.......................................................................2312.0020200
...............................................................................................................................................................................................................A------TACAAAGCGATCGGAAATGC.............................................................................2112.0020200
.....................................................................................................................................................GACCTCTACCGGAGCCGGTTGT............................................................................................................................................2212.0020200
....................................................................................................................................................................CGGTTGTCTTCG---CA-ATAGAGT---------GAAAT............................................................................................................2612.0020200
.........................................................................................................................................................................................................ATA--GA------TACAAAGCGATCGGAAATGCA............................................................................2612.0020110
.........................................................................................................................................................................GTCTTCG---CA-ATAGAGT---------GAAATA--GA------TA...............................................................................................2612.0020200
....................................................................................................................................................................CGGTTGTCTTCG---CA-ATAGAGT---------GAAATA--G........................................................................................................2812.0020200
..................................................................................................................................................ATCGACCTCTACCGGAGC...................................................................................................................................................1812.0020020
.......................................................................................................................................................................................................................ACAAAGCGATCGGAAATGCA............................................................................2012.0020020
..........................................................................................................................................AGTTTCAAATCGACCTCTACCGGAGC...................................................................................................................................................2612.0021010
................................................................................................................................................................................................................................................................GCCGTTGG-------------------------CCATGCAAAACGA.........2111.0011000
..................................................................................................................................................................................................................................GGAAATGCAGAACGATAAGT.................................................................2011.0010001
..........................................................................................................................................................................................................................AAGCGATCGGAAATGCAGAACG.......................................................................2211.0010100
...............................................................................................................................................................................................................A------TACAAAGCGATCGGAAATGCAGAAC........................................................................2611.0010010
....................................................................................................................................................................CGGTTGTCTTCG---CA-ATAGAGT---------GAA..............................................................................................................2411.0010100
.........................................................................................................................................................................................................ATA--GA------TACAAAGCGATCGGA..................................................................................2011.0011000
....................................................................................................................................................................................................................................AAATGCAGAACGATAAGT.................................................................1811.0010001
....................................................................................................................................................CGACCTCTACCGGAGCCGGTTGT............................................................................................................................................2311.0011000
...............................................................................................................................................................................................................................................GATAAGTTTGCCCCACCGCCGTTGG-------------------------CC....................2711.0010100
..........................................................................................................................................................CTACCGGAGCCGGTTGTCTTCG---C...................................................................................................................................2311.0010010
................................................................................................................................................AAATCGACCTCTACCGGAGCCGGTT..............................................................................................................................................2511.0011000
.............................................................................................................................................TTCAAATCGACCTCTACCG.......................................................................................................................................................1911.0011000
.....................................................................................................................................................................GGTTGTCTTCG---CA-ATAGAGT---------GAA..............................................................................................................2311.0011000
.................................................................................................................................................................................................................................................TAAGTTTGCCCCACCGCCGT..................................................2011.0010100
................................................................................................................................................................GAGCCGGTTGTCTTCG---CA-ATAGAGT---------GA...............................................................................................................2711.0010010
..............................................................................................................................................TCAAATCGACCTCTACCGGA.....................................................................................................................................................2011.0011000
......................................................................................................................................................................................................................TACAAAGCGATCGGAAATGCAGAACG.......................................................................2611.0010100
...............................................................................................................................................................................................................A------TACAAAGCGATCGGAAATGCAGA..........................................................................2411.0010100
....................................................................................................................................................................................................................................................GTTTGCCCCACCGCCGTTGG-------------------------CCA...................2311.0010010
..........................................................................................................................................................CTACCGGAGCCGGTTGTCTTC........................................................................................................................................2111.0010100
........................................................................................................................................................................................................AATA--GA------TACAAAGCGATCGGAAATGCA............................................................................2711.0011000
........................................................................................................................................................CTCTACCGGAGCCGGTTGT............................................................................................................................................1911.0011000
................................................................................................................................................................GAGCCGGTTGTCTTCG---CA-ATAGAGT---------G................................................................................................................2611.0010010
.......................................................................................................................................................................................TAGAGT---------GAAATA--GA------TACAAAGC.........................................................................................2211.0010100
.......................................................................................................................................................................................................................ACAAAGCGATCGGAAATGCAGAA.........................................................................2311.0010100
..................................................................................................................................................ATCGACCTCTACCGGAGCCGGTTGT............................................................................................................................................2511.0010100
.........................................................................................................................................................................................................ATA--GA------TACAAAGCGATCGGAAATGC.............................................................................2511.0010100
..............................................................................................................................................................................................................GA------TACAAAGCGATCGGAAATGC.............................................................................2211.0010100
....................................................................................................................................................................CGGTTGTCTTCG---CA-ATAGAGT---------GAAA.............................................................................................................2511.0010100
...............................................................................................................................................CAAATCGACCTCTACCGGAGCCGGTTGT............................................................................................................................................2811.0011000
.............................................................................................................................................................................................................................CGATCGGAAATGCAGAACGAT.....................................................................2111.0011000
.................................................................................................................................................AATCGACCTCTACCGGAGC...................................................................................................................................................1911.0010010
.......................................................................................................................................................................................................................ACAAAGCGATCGGAAATGCAG...........................................................................2111.0010100
........................................................................................................................................................................................................AATA--GA------TACAAAGCGATCGGAAATGC.............................................................................2611.0010100
...........................................................................................................................................................................................GT---------GAAATA--GA------TACAAAGCGAT......................................................................................2111.0010100
................................................................................................................................................AAATCGACCTCTACCGGAGC...................................................................................................................................................2011.0011000
...............................................................................................................................................................................................................A------TACAAAGCGATCGGAAATGCAGAA.........................................................................2511.0010100
............................................................................................................................................TTTCAAATCGACCTCTACCGGAGC...................................................................................................................................................2411.0011000
.............................................................................................................................................................................TCG---CA-ATAGAGT---------GAAATA--GA------TA...............................................................................................2211.0010100
....................................................................................................................................................................CGGTTGTCTTCG---CA-ATAGA............................................................................................................................1911.0011000
.......................................................................................................................................................CCTCTACCGGAGCCGGTTGTCTTCG---CA-.................................................................................................................................2711.0010100
......................................................................................................................................................................................................GAAATA--GA------TACAAAGCGATC.....................................................................................2011.0010010
...............................................................................................................................................................................................................A------TACAAAGCGATCGGAAATGCAGAACG.......................................................................2711.0010100
......................................................................................................................................................................GTTGTCTTCG---CA-ATAGAGT---------G................................................................................................................2011.0010100
...............................................................................................................................................................................................................A------TACAAAGCGATCGGAAATGCAG...........................................................................2311.0010100
...........................................................................................................................................................................................GT---------GAAATA--GA------TACAAAGCGATCGGA..................................................................................2511.0010010
...........................................................................................................................................................................................................................................GAACGATAAGTTTGCCCCACCGCCGTT.................................................2711.0010010
......................................................................................................................................................................................................................TACAAAGCGATCGGAAATGCA............................................................................2111.0011000
dm3
AGCATTT-AC---TGAAATAGATGCCGCCCC-CTAGTGATAAG-------GGATTGAA-TCCGCACTTGATTATCAGTTGGGCAAGGCTCGATAGCAGTG--CACATAAATATCATTTGGCCAGCCCCCGTATTAGCCAGTTTCAAATCGACCTCTACCGGAGCAGTTTGTCTTCG---CA-ATAGAGT---------GAAATA--GA------TATAAAGCGATCGGAAATTCAGAACGATAAGTTTGCCCCACCGCCGTTGG-------------------------CCATGCAAAACGACAAGTATCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................GAGCAGTTTGTCTTCG---CA-ATAGAGT---------GA...............................................................................................................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000
..........................................................................................................................................................CTACCGGAGCAGTTTGTC...........................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
....................................................................................................................................................................AGTTTGTCTTCG---CA-ATAGAGT---------GAA..............................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000
......................................................................................................................................................................................................................................................................GG-------------------------CCATGCAAAACGACAAGT....2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................CTACCGGAGCAGTTTGTCTTC........................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001000000000000
...........................................................................................................................................................................................................................AGCGATCGGAAATTCAGAACG.......................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TTCAAATCGACCTCTACCGG......................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................AGTTTGTCTTCG---CA-ATAGAGT---------GAAAT............................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000010000000
.......................................................................................................................................................................................................................ATAAAGCGATCGGAAATTCAGAAC........................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.....................................................................................................................................................................GTTTGTCTTCG---CA-ATAGAGT---------GA...............................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
...........................................................................................................................................................................................GT---------GAAATA--GA------TATAAAGCGAT......................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000
..................................................................................................................................................................GCAGTTTGTCTTCG---CA-ATAGAGT---------.................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.......................................................................................................................................................................TTGTCTTCG---CA-ATAGAGT---------GAA..............................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...............................................................................................................................................CAAATCGACCTCTACCGGAGC...................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................GCAGTTTGTCTTCG---CA-AT...............................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.....................................................................................................................................................GACCTCTACCGGAGCAGT................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..........................................................................................................................................................................................................................AAGCGATCGGAAATTCAGA..........................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................................................................................................................................................CGACCTCTACCGGAGCAGT................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................G---CA-ATAGAGT---------GAAATA--GA------TATAAAGCGATCGGA..................................................................................3311.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................CTCTACCGGAGCAGTTTGTCTTCG---C...................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................................................................................................................................................................................................................AAGCGATCGGAAATTCAGAAC........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................................................................................................................................................................................................ATAAAGCGATCGGAAATTCAGAACG.......................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
....................................................................................................................................................................AGTTTGTCTTCG---CA-ATAGAGT---------.................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.........................................................................................................................................................TCTACCGGAGCAGTTTGTCTT.........................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.....................................................................................................................................................................GTTTGTCTTCG---CA-ATAGAGT---------.................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...........................................................................................................................................................................................GT---------GAAATA--GA------TATAAAGCGATCGGA..................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................AAGTTTGCCCCACCGCCGTTGG-------------------------CCATGCAA..............3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................CGGAAATTCAGAACGATAAGT.................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.............................................................................................................................................TTCAAATCGACCTCTACCGGA.....................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................CGGAGCAGTTTGTCTTCG---CA-ATAGAGT---------G................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................AGCAGTTTGTCTTCG---CA-ATAGAGT---------.................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..................................................................................................................................................................GCAGTTTGTCTTCG---CA-ATAGAGT---------GA...............................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................A-ATAGAGT---------GAAATA--GA------TATAAAG..........................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...............................................................................................................................................CAAATCGACCTCTACCGGA.....................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................CGACCTCTACCGGAGCAG.................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................ATA--GA------TATAAAGCGATCGGA..................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................................................................................................................................................................G---CA-ATAGAGT---------GAAATA--GA------T................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
......................................................................................................................................................................TTTGTCTTCG---CA-ATAGAGT---------.................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................GA------TATAAAGCGATCGGAAATTCAG...........................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................GT---------GAAATA--GA------TATAAAGCGATCGGAA.................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.............................................................................................................................................................................................................................CGATCGGAAATTCAGAACGATAAGTT................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................TATAAAGCGATCGGAAATTCAGAAC........................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................................................................................................................................CAGTTTGTCTTCG---CA-ATAGAGT---------G................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TGG-------------------------CCATGCAAAACGACAAGT....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................CAAATCGACCTCTACCGGAG....................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...................................................................................................................................................................CAGTTTGTCTTCG---CA-ATAGAGT---------GAAAT............................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...............................................................................................................................................................GGAGCAGTTTGTCTTCG---CA-AT...............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................ACCGGAGCAGTTTGTCTT.........................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
......................................................................................................................................................................................................GAAATA--GA------TATAAAGCGATCGGAAA................................................................................2511.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................GCAGTTTGTCTTCG---CA-ATAGAGT---------GAAATA--.........................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................................................................................................................................................................................................AGCGATCGGAAATTCAGAACGAT.....................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..................................................................................................................................................................GCAGTTTGTCTTCG---CA-ATAGAGT---------G................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.................................................................................................................................................AATCGACCTCTACCGGAG....................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................ATAAAGCGATCGGAAATTCAGAA.........................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
........................................................................................................................................................................TGTCTTCG---CA-ATAGAGT---------G................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................GAGCAGTTTGTCTTCG---CA-ATAG.............................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................TAAAGCGATCGGAAATTCAGAACG.......................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...................................................................................................................................................TCGACCTCTACCGGAGCAGTTTGTCTTC........................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
....................................................................................................................................................................AGTTTGTCTTCG---CA-ATAGAGT---------GAAA.............................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................CTACCGGAGCAGTTTGTCTT.........................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................AGCGATCGGAAATTCAGA..........................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................................AGAGT---------GAAATA--GA------TATAAA...........................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................................................................................................................................................................................................................................................GTTTGCCCCACCGCCGT..................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................ATAGAGT---------GAAATA--GA------TATA.............................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................................................................................................................................................CTACCGGAGCAGTTTGTCT..........................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
................................................................................................................................................................................................................................TCGGAAATTCAGAACGATC....................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ACCATTT-AC---TGAAATCGCTGCCGCCCCCCTAGTG------------------AA-TCCGCACTTGATTATCACTTGGGCAAGGCTCGATAGCATTG--CACATAAATATCATTTGGCCAGCCCCCGTATTAGCCAGTTTCAAATCGACCTCAAACGGAGCAGGTTGTCTTCG---TA-CCGGAGT---------GAAATA--CATACGAGTACAACGCAATCGGAGATGCAGAACGATAAGCTTGCCCCACCGCC----------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................ATA--CATACGAGTACAACGCAATCGGA..................................................................................2613.0032000100
.......................................................................................................................................................CCTCAAACGGAGCAGGTTGTCTTC........................................................................................................................................2412.0021000010
..................................................................................................................................................................GCAGGTTGTCTTCG---TA-CCGGA............................................................................................................................2112.0022000000
........................................................................................................................................................................................................................CAACGCAATCGGAGATGCAGAACGAT.....................................................................2612.0020000200
....................................................................................................................................................................AGGTTGTCTTCG---TA-CCGGAGT---------GAA..............................................................................................................2412.0020000110
........................................................................................................................................................................................................................CAACGCAATCGGAGATGCAGAAC........................................................................2311.0011000000
..................................................................................................................................................ATCGACCTCAAACGGAGCAGGTT..............................................................................................................................................2311.0010000100
..................................................................................................................................................................GCAGGTTGTCTTCG---TA-CCGGAGT---------GAA..............................................................................................................2611.0010000100
............................................................................................................................................................AACGGAGCAGGTTGTCTTC........................................................................................................................................1911.0010000100
...........................................................................................................................................................AAACGGAGCAGGTTGTCTTC........................................................................................................................................2011.0010000100
.................................................................................................................................................AATCGACCTCAAACGGAGCAGGT...............................................................................................................................................2311.0010000010
.....................................................................................................................................................GACCTCAAACGGAGCAGGT...............................................................................................................................................1911.0010000010
................................................................................................................................................................GAGCAGGTTGTCTTCG---TA-CCG..............................................................................................................................2111.0011000000
............................................................................................................................................TTTCAAATCGACCTCAAACGGAGCAGGT...............................................................................................................................................2811.0011000000
.....................................................................................................................................................GACCTCAAACGGAGCAGGTTGT............................................................................................................................................2211.0010000100
................................................................................................................................................................GAGCAGGTTGTCTTCG---TA-CCGGAGT---------GA...............................................................................................................2711.0010000100
..........................................................................................................................................................CAAACGGAGCAGGTTGTCTT.........................................................................................................................................2011.0010000100
.........................................................................................................................................................................................................ATA--CATACGAGTACAACGCA........................................................................................2011.0011000000
...............................................................................................................................................................................................................ATACGAGTACAACGCAATCGGAGATGC.............................................................................2711.0010000100
...............................................................................................................................................CAAATCGACCTCAAACGGAGCA..................................................................................................................................................2211.0010000100
...........................................................................................................................................................................................................................CGCAATCGGAGATGCAGAACGA......................................................................2211.0010000100
..............................................................................................................................................................................................................CATACGAGTACAACGCAATCGGA..................................................................................2311.0011000000
..............................................................................................................................................................................CG---TA-CCGGAGT---------GAAATA--CATAC....................................................................................................2211.0010000100
...................................................................................................................................................................................................................GAGTACAACGCAATCGGAGATGCAG...........................................................................2511.0011000000
........................................................................................................................................................CTCAAACGGAGCAGGTTGTCTTC........................................................................................................................................2311.0010000010
.....................................................................................................................................................................................................................................GATGCAGAACGATAAGCT................................................................1811.0010000100
.......................................................................................................................................................CCTCAAACGGAGCAGGTTGT............................................................................................................................................2011.0010000010
.....................................................................................................................................................................................................................GTACAACGCAATCGGAGATGCAGAACG.......................................................................2711.0010000010
..................................................................................................................................................ATCGACCTCAAACGGAGCA..................................................................................................................................................1911.0010000100
.......................................................................................................................................................................................CGGAGT---------GAAATA--CATACGAGTACAAC...........................................................................................2611.0011000000
..........................................................................................................................................................CAAACGGAGCAGGTTGTCTTC........................................................................................................................................2111.0010000100
.....................................................................................................................................................................................................................GTACAACGCAATCGGAGATGCAGAAC........................................................................2611.0011000000
.....................................................................................................................................................................GGTTGTCTTCG---TA-CCGGAGT---------.................................................................................................................2011.0010000010
..........................................................................................................................................................CAAACGGAGCAGGTTGTC...........................................................................................................................................1811.0010000100
...............................................................................................................................................................................G---TA-CCGGAGT---------GAAATA--CATACGAGT................................................................................................2511.0010000100
........................................................................................................................................................................................GGAGT---------GAAATA--CATACGA..................................................................................................1811.0011000000
....................................................................................................................................................................AGGTTGTCTTCG---TA-CCGGA............................................................................................................................1911.0011000000
...........................................................................................................................................................................................................A--CATACGAGTACAACGCAATCGGAGAT...............................................................................2711.0011000000
.................................................................................................................................................................AGCAGGTTGTCTTCG---TA-CCGGAGT---------GA...............................................................................................................2611.0010000100
.....................................................................................................................................................................................................................................GATGCAGAACGATAAGCTT...............................................................1911.0010000100
........................................................................................................................................................CTCAAACGGAGCAGGTTGTCTTCG---....................................................................................................................................2411.0010000100
...................................................................................................................................................................................TA-CCGGAGT---------GAAATA--CATACGAG.................................................................................................2311.0011000000
.........................................................................................................................................................................................................................AACGCAATCGGAGATGCAGAACGA......................................................................2411.0010000100
......................................................................................................................................................................................CCGGAGT---------GAAATA--CATACGAGTACA.............................................................................................2511.0010000100
.....................................................................................................................................................GACCTCAAACGGAGCAGGTTGTCTTC........................................................................................................................................2611.0010000100
...............................................................................................................................................................................................................ATACGAGTACAACGCAATCGGAGA................................................................................2411.0011000000
..................................................................................................................................................................GCAGGTTGTCTTCG---TA-CCGGAGT---------GA...............................................................................................................2511.0010000100
...........................................................................................................................................................................................................A--CATACGAGTACAACGCAATCGGA..................................................................................2411.0011000000
.......................................................................................................................................................................................................................ACAACGCAATCGGAGATGCAGA..........................................................................2211.0010000100
................................................................................................................................................................GAGCAGGTTGTCTTCG---TA-CCGGAGT---------GAA..............................................................................................................2811.0010000100
..............................................................................................................................................................................CG---TA-CCGGAGT---------GAAATA--CATACGAGTA...............................................................................................2711.0010000100
...................................................................................................................................................................CAGGTTGTCTTCG---TA-CCGGAGT---------GA...............................................................................................................2411.0011000000
...........................................................................................................................................................AAACGGAGCAGGTTGTCTT.........................................................................................................................................1911.0010000100
........................................................................................................................................................................................................................................GCAGAACGATAAGCTTGCCCCACCGCC----------------------------------------------------2711.0011000000
.....................................................................................................................................................................................................................GTACAACGCAATCGGAGATGCA............................................................................2211.0010000100
droYak3
ACCATTT-AC---TGAAATTGATGCCGCCCC-CTAGTGATTAG-------GCGTTGAA-TCCGCACTTGATTATCAGTTGGGCAAGGCTCGATAGCATTG--CGCATAAATATCATTTGGCCAGCCCCCGTATTAGCCAGTTTCAAATCGACCTCAAACGGAGTAGGTTGTCTTCG---TA-AGAGTGT---------AAAATA--TAT----ATATAACGCGATCGGAAATGCAGAACGATAAGTTTGCCCCA---------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................GTAGGTTGTCTTCG---TA-AGAGT............................................................................................................................2115.00501000040000
.............................................................................................................................................TTCAAATCGACCTCAAACGGA.....................................................................................................................................................2114.00401100020000
..........................................................................................................................................................CAAACGGAGTAGGTTGTCTTC........................................................................................................................................2113.00300300000000
..................................................................................................................................................ATCGACCTCAAACGGAGTAGGT...............................................................................................................................................2212.00200100010000
..................................................................................................................................................................GTAGGTTGTCTTCG---TA-AGAGTGT---------AAAAT............................................................................................................2812.00200000020000
...........................................................................................................................................................................................................A--TAT----ATATAACGCGATCGGA..................................................................................2012.00200000020000
.........................................................................................................................................................TCAAACGGAGTAGGTTGT............................................................................................................................................1811.00101000000000
..................................................................................................................................................................GTAGGTTGTCTTCG---TA-AGAGTGT---------A................................................................................................................2411.00100000010000
.....................................................................................................................................................................................................................ATATAACGCGATCGGAAATGCAGAAC........................................................................2611.00100000010000
.......................................................................................................................................................CCTCAAACGGAGTAGGTTGT............................................................................................................................................2011.00100000010000
...............................................................................................................................................................................................................AT----ATATAACGCGATCGGAAATGCA............................................................................2411.00100000010000
........................................................................................................................................................CTCAAACGGAGTAGGTTGTCTTC........................................................................................................................................2311.00100000010000
.....................................................................................................................................................GACCTCAAACGGAGTAGGT...............................................................................................................................................1911.00100100000000
.........................................................................................................................................................................................................................AACGCGATCGGAAATGCAGAAC........................................................................2211.00100000010000
...............................................................................................................................................................................................................AT----ATATAACGCGATCGGAAATGC.............................................................................2311.00100000010000
.......................................................................................................................................................................................................................ATAACGCGATCGGAAATGCA............................................................................2011.00100000010000
..................................................................................................................................................................GTAGGTTGTCTTCG---TA-AGA..............................................................................................................................1911.00100100000000
.................................................................................................................................................AATCGACCTCAAACGGAGTAGGT...............................................................................................................................................2311.00100000010000
........................................................................................................................................................................TGTCTTCG---TA-AGAGTGT---------AAAAT............................................................................................................2211.00100000010000
...................................................................................................................................................................TAGGTTGTCTTCG---TA-AGA..............................................................................................................................1811.00100100000000
..........................................................................................................................................................................................................TA--TAT----ATATAACGCGATCGGAAAT...............................................................................2411.00100000010000
..................................................................................................................................................ATCGACCTCAAACGGAGTAGGTTGTC...........................................................................................................................................2611.00101000000000
.........................................................................................................................................................................................................................AACGCGATCGGAAATGCAGAACGATA....................................................................2611.00100100000000
.......................................................................................................................................................CCTCAAACGGAGTAGGTTGTC...........................................................................................................................................2111.00100000010000
.............................................................................................................................................TTCAAATCGACCTCAAACGGAGTAGGT...............................................................................................................................................2711.00100000010000
.....................................................................................................................................................................................................................ATATAACGCGATCGGAAATGCAGAACG.......................................................................2711.00100000010000
................................................................................................................................................................GAGTAGGTTGTCTTCG---TA-AGA..............................................................................................................................2111.00101000000000
.....................................................................................................................................................................................................................ATATAACGCGATCGGAAATGC.............................................................................2111.00100100000000
............................................................................................................................................................................................................................GCGATCGGAAATGCAGAACGAT.....................................................................2211.00100100000000
.........................................................................................................................................................................................................................AACGCGATCGGAAATGCAGAACGAT.....................................................................2511.00100100000000
..............................................................................................................................................................................................................................GATCGGAAATGCAGAACG.......................................................................1811.00101000000000
.......................................................................................................................................................................................................................ATAACGCGATCGGAAATGC.............................................................................1911.00100000010000
.....................................................................................................................................................GACCTCAAACGGAGTAGGTTGTCTTC........................................................................................................................................2611.00100100000000
...................................................................................AAGGCTCGATAGCATTG--CG...............................................................................................................................................................................................................1911.00101000000000
.......................................................................................................................................................................................................................ATAACGCGATCGGAAATGCAGAACG.......................................................................2511.00100000010000
....................................................................................................................................................................AGGTTGTCTTCG---TA-AGAGT............................................................................................................................1911.00100000010000
.....................................................................................................................................................................................................................................AATGCAGAACGATAAGTTTG..............................................................2011.00100010000000
.......................................................................................................................................................CCTCAAACGGAGTAGGTTGTCC..........................................................................................................................................2211.00100100000000
............................................................................................................................................................................................T---------AAAATA--TAT----ATATAACGCGATCGGAA.................................................................................2711.00100000010000
...........................................................................................................................................................................................................A--TAT----ATATAACGCGATCGG...................................................................................1911.00100000010000
..................................................................................................................................................................GTAGGTTGTCTTCG---TA-AG...............................................................................................................................1811.00101000000000
....................................................................................................................................................................AGGTTGTCTTCG---TA-AGAGTGT---------AAAAT............................................................................................................2611.00100100000000
droEug1
AGCATTT-AC---TGTAATAAGTACCGCGCG-CCAGTGATATG-------CG-TTGGC-CCCGCACTTGATTATCAGTTGGCCCAGGCCCGATCCCGATC--GAAATAAAAATCATTTGCCCATCCACTGTGTTAGCCAGTTTCAAATCGACAGCAAGCCGAGCAGGTTGTCTTCG---T--GGAAAGT---------GAAATA--TATTCGTATATAACGCGATCGACAATGCAGAACGACAAGTTTGCTCCACCGCCGTTGG-------------------------ACAGGCAGAACGACAAGTTTCCSizeHit CountTotal NormTotal
No Reads
droBia1
ACCTTTT-AC---TATAATCGGTGACACCCC--CAAAGATAAG-------GG-TTGGC-CCCGCTCTTTATCATCAATTGGAACTGAGTGTATCCCATAG-ACGTATAAATATCATTTGGCCAGCCGCCGTATTAGCCAGTTTCGAATCGACCTCAAGCGAGGCAGGTTGCCTTTT----A-GCGGAGT---------GAATTT--A----------AACGCGATCGGCAATGCAGAACGACAGATTTGCACCACCGCCGTTGG-------------------------GCACGCAAAACGACAAGTACCCSizeHit CountTotal NormTotal
No Reads
droTak1
ACCATTT-AC---TGCAATCACTCCCGCCCC-CCAGTGATAAG-------AG--------------TTTGTTATCAGCTCGGCCAGGCTCCATGTCGGCA--GACATAAATATCATTTGGCCAGCTGCCGTATTAGCCAGTTTCAAATCGACCTCAAACTGAGCAGGTTGTCTTCG---T--GCGGAGT---------GAAATA--AA------T----CGCGATCGGCCATGCAGAACGACAAGTTTGCTCCACCGCCGTTGG-------------------------GCATGCAAAACGACAAGTACCCSizeHit CountTotal NormTotal
No Reads
droEle1
ACCATTT-GC---ACTAATCAACG-----------------------------TTGGC-AACGCTCCCAAATATCAGTTGTGCCAGACCCGATCTCGTTA--TACATAAAAATCAC-TGGCCATCCGACGTTTTGGCCAGTTTCGAATCGACCTCAAACGGAGCAGGTTGCCTCCG---T--GTGGAGA---------GAAATA--AA----------TCGCGATCGACCATGCAGAACGACAAGTTTGCACCACCGCCG---------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ACCATTT-GC---TAAAATCAGCG-----------------------------TTGGC-CCCGCTCACGATTATCAGTTGGGCCGGGACCGATCATTTTA--CACATAAAAACCAGATGGCCAATCGTCGTATCAACCAGTTTCGAATCGACCTCACGCGGAGCAGGTTGTCTTCTTCGT--GTGGAGA---------GAAATA--AA----------TCGCGATCGACCATGCAGAACGACAAGTTTGCACCACCGCCAGTAGGATTTACCTCGGCA-------------------------------CCSizeHit CountTotal NormTotal
No Reads
droFic1
GCCACTC-AC---TGTAATCAATGATTTT----CAGTGATAAGTGATAAGCA-TAAAC-TCCCCACTCGAGTATCAGTTGTGTTGGGCTCGATCTCGATG--C-CATAAATA-CATTTGGCCATCCGCCCTGTTAGCCAGTTTCGAATCGACCTCAAGCGGAGGAAGTTGCCTTTCT--TT-CTG--GTGGCAAACGTG------------------AAAGCGATCGG-AATGCAGAACGACAAGTTTGCACCACCGCCGTTGG-------------------------CCATGCAAAACGACAAGTACCCSizeHit CountTotal NormTotal
No Reads
droKik1
GCCTGTCCCC---TCTAATCAATGCCTGGCA-CCTGCGATAAG-------CT-----C-TCCACACTCCAGTATCAGTTGG-CCAGGCCCGATCTCGGTGAAAATATAAAAATCATTCGGCCTGCGGATCCAGTGCCCAGTTATAAATCGACCTCTTGCGAAGACGGTTCGCTTCG---GTAAAAGAGT---------GAAAAG--AA------T------------AGAATGCAGAACGACAAGTTTGGAG-------------------------------------------------------GCCCSizeHit CountTotal NormTotal
No Reads
droAna3
GCCTTTT-AT---TATTGTTGCTACTTTG-----TGTAATCAT-ATT---TCGATAAGCCACTCACTGAAGTGCTGCTTGTGCT-AGCTCGATCTCGAGG---AAATAAAAACCAATTTGACGGCCTACGA-GCGAACAGTTTCGCACCCACCTCGGACTGAGCCGGTTGTCCTCC----A-GTGGAAT---------AAAAAA--TA------T----CAACAGC-AGTATGCAGAACGATAAATTCGCACCACCGCCACT-------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................................AT---------AAAAAA--TA------T----CAACAGC-AGT.................................................................................2113.003010011
.....................................................................................................................................................CACCTCGGACTGAGCCGGTT..............................................................................................................................................2013.003020010
...........................................................................................................................................GTTTCGCACCCACCTCGGACT.......................................................................................................................................................2112.002110000
..........................................................................................................................................................................................................................................AGAACGATAAATTCGCACCACC.......................................................2212.002020000
......................................................................................................................................................................................................................T----CAACAGC-AGTATGCAGAACG.......................................................................2112.002100001
...............................................................................................................................................................................................................A------T----CAACAGC-AGTATGCAGAAC........................................................................2111.001000001
.............................................................................................................................................TTCGCACCCACCTCGGACTGA.....................................................................................................................................................2111.001010000
.............................................................................................................................................................ACTGAGCCGGTTGTCCTCC----A-G................................................................................................................................2111.001100000
..........................................................................................................................................................CGGACTGAGCCGGTTGTCCTCC----A-GTG..............................................................................................................................2611.001100000
....................................................................................................................................................CCACCTCGGACTGAGCCGGTT..............................................................................................................................................2111.001100000
...........................................................................................................................................................................................................A--TA------T----CAACAGC-AGTATGCAGAAC........................................................................2311.001010000
.........................................................................................................................................................................................................AAA--TA------T----CAACAGC-AGTATGCAGAAC........................................................................2511.001010000
...............................................................................................................................................CGCACCCACCTCGGACTGAGC...................................................................................................................................................2111.001000010
...............................................................................................................................................CGCACCCACCTCGGACTGAGCCGGTT..............................................................................................................................................2611.001100000
........................................................................................................................................................................................................AAAA--TA------T----CAACAGC-AGTATGCAGAAC........................................................................2611.001010000
..................................................................................................................................................................GCCGGTTGTCCTCC----A-GTGGA............................................................................................................................2011.001100000
..................................................................................................................................................ACCCACCTCGGACTGAGCC..................................................................................................................................................1911.001010000
...............................................................................................................................................................................................................A------T----CAACAGC-AGTATGCAGAACG.......................................................................2211.001000010
......................................................................................................................................................................................................................................ATGCAGAACGATAAATTCGCACCACC.......................................................2611.001100000
...........................................................................................................................................................................................................................CAACAGC-AGTATGCAGAACGAT.....................................................................2211.001000010
...........................................................................................................................................................................................................A--TA------T----CAACAGC-AGTATGCAG...........................................................................2011.001001000
................................................................................................................................................GCACCCACCTCGGACTGAGCCGGC...............................................................................................................................................2411.001010000
................................................................................................................................................GCACCCACCTCGGACTGAGCC..................................................................................................................................................2111.001010000
...........................................................................................................................................GTTTCGCACCCACCTCGGACTGAGC...................................................................................................................................................2511.001000010
..................................................................................................................................................................GCCGGTTGTCCTCC----A-GTGG.............................................................................................................................1911.001100000
..................................................................................................................................................ACCCACCTCGGACTGAGCCGGTT..............................................................................................................................................2311.001100000
.....................................................................................................................................................CACCTCGGACTGAGCCGGT...............................................................................................................................................1911.001010000
............................................................................................................................................................GACTGAGCCGGTTGTCCTCC----A-GT...............................................................................................................................2311.001001000
.............................................................................................................................................TTCGCACCCACCTCGGACTGAGCCGGTT..............................................................................................................................................2811.001010000
..........................................................................................................................................................................................................AA--TA------T----CAACAGC-AGTATGCAGAAC........................................................................2411.001010000
...............................................................................................................................................CGCACCCACCTCGGACTGAGCCGGC...............................................................................................................................................2511.001010000
......................................................................................................................................................................................................................................ATGCAGAACGATAAATTCGCACCACCGC.....................................................2811.001100000
.................................................................................................................................................CACCCACCTCGGACTGAGCCGG................................................................................................................................................2211.001010000
..............................................................................................................................................................CTGAGCCGGTTGTCCTCC----A-G................................................................................................................................2011.001100000
...................................................................................................................................................................................................................................AGTATGCAGAACGATAAATTCGCACC..........................................................2611.001010000
...........................................................................................................................................GTTTCGCACCCACCTCGGACTGAGCC..................................................................................................................................................2611.001000010
.............................................................................................................................................TTCGCACCCACCTCGGACT.......................................................................................................................................................1911.001010000
...........................................................................................................................................GTTTCGCACCCACCTCGGACTGA.....................................................................................................................................................2311.001010000
................................................................................................................................................................GAGCCGGTTGTCCTCC----A-GTG..............................................................................................................................2011.001010000
droBip1
A----------------------------------------------------------------CTCAAGTACCAGGTTGTGCAGGCTCGATCTCGGAG---AAATAAAAACCATTTTGACTGCCTT-TTAGCAAACAGTTTCGAATCCACCTCGTACTGAGCAGGTTGTCCTCC----A-GTGGAAT---------AATAAA--TA------A---CCGCCAC--AGTATGCAGAACGACAAATTCGC-------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
ACCGTTT-GGGTGTCTTATCAATGCCATT---TGAACGATAAG-------CCCAGGTC-CCTCCAACCGACCATCAGTTGGACCAGGCCCAGTCGCAAAA-AGCCACAAAAATCACTTGCCCTGGCATTCGGTCAATCAGTTTGGAATCGAGCCCCAACACGGTCGGTTGTATCCT---CG-AAAAA-----------GAAGCCGAGC------CCCACCGAGGAACATAATGCAAAACGATAAGTTCGCGGCTCCGCCAGCAGGCTTTTCCTCGGCCCCGCCGGCAGGATACCCCCCAC-AGGAATACCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................TCAATCAGTTTGGAATCGA................................................................................................................................................................1912.0020110000000
.........................................................................................................................................................................................AA-----------GAAGCCGAGC------CCCACCGAGGAA.....................................................................................2411.0010100000000
..................................................................................................................................................................................................................................................................................GGCCCCGCCGGCAGGATACCCCCC.............2411.0010100000000
..........................................................................................................................................................................................................................................................................TTTTCCTCGGCCCCGCCGGCA........................2111.0010100000000
..................................................................................................................................................................................................................................CATAATGCAAAACGATAAGTT................................................................2111.0010100000000
.......................................................................................................................................................................TTGTATCCT---CG-AAAAA-----------GAAGCCGAGC------C................................................................................................2711.0010010000000
.............................................................................................................................................................ACACGGTCGGTTGTATCCT---CG-A................................................................................................................................2211.0010000100000
..............................................................................................................................................................CACGGTCGGTTGTATCCT---CG-A................................................................................................................................2111.0010100000000
.................................................................................................................................................................................................................................................TAAGTTCGCGGCTCCGCCAGC.................................................2111.0010100000000
..........................................................................................................................................................................................................................................AAAACGATAAGTTCGCGGCTCCGCCA...................................................2611.0010100000000
.....................................................................................................................................................................................................................................................................CAGGCTTTTCCTCGGCCCCGCCGGCA........................2611.0010100000000
..............................................................................................................................................................................CT---CG-AAAAA-----------GAAGCCGAG........................................................................................................1811.0010100000000
.....................................................................................................................................................GAGCCCCAACACGGTCGGTTGT............................................................................................................................................2211.0010100000000
.................................................................................................................................................................................................................................ACATAATGCAAAACGATAAGT.................................................................2111.0010010000000
........................................................................................................................................................................................AAA-----------GAAGCCGAGC------CCCACCGAG........................................................................................2211.0010100000000
..........................................................................................................................................................CCAACACGGTCGGTTGTATC.........................................................................................................................................2011.0010010000000
................................................................................................................................................................................................................................................ATAAGTTCGCGGCTCCGCCAG..................................................2111.0010100000000
....................................................................................................................................................................................................................................................GTTCGCGGCTCCGCCAGCAGGCT............................................2311.0010100000000
.........................................................................................................................................................................................................................................CAAAACGATAAGTTCGCGGCTCCGC.....................................................2511.0010100000000
................................................................................................................................................................................................................................................ATAAGTTCGCGGCTCCGCCA...................................................2011.0010100000000
..........................................................................................................................................................................................A-----------GAAGCCGAGC------CCCACCGAGGA......................................................................................2211.0010100000000
.......................................................................................................................................................................................................................................................CGCGGCTCCGCCAGCAGGCT............................................2011.0010100000000
........................................................................................................................................................................TGTATCCT---CG-AAAAA-----------GAAGCCGA.........................................................................................................2311.0010100000000
.............................................................................................................................................................ACACGGTCGGTTGTATCCT---C...................................................................................................................................2011.0010100000000
............................................................................................................................................................AACACGGTCGGTTGTATCCT---CG-AAAAA-----------G................................................................................................................2811.0010100000000
.........................................................................................................................................................................................AA-----------GAAGCCGAGC------CCCACCGAGGA......................................................................................2311.0010100000000
............................................................................................................................................................AACACGGTCGGTTGTATCCT---....................................................................................................................................2011.0010100000000
....................................................................................................................................................................................G-AAAAA-----------GAAGCCGAGC------CCCACCGAGGA......................................................................................2711.0010100000000
droPer2
ACCGTTT-GGGTGTCTTATCAATGCCATT---TGAACGATAAG-------CCCAGGTC-CCTCCAACCGACCATCAGTTGGACCAGGCCCAGTCGCAAAA-AGCCACAAAAATCACTTGCCCTGGCATTCGGTCAATCAGTTTCGAATCGAGCCCCAACACGGTCGGTTGTATCCT---CG-AAAAA-----------GAAGCCGAGC------CCCACCGAGGAACATAATGCAAAACGATAAGTTCGCGGCTCCGCCAGCAGGCTTTTCCTCGGCCCCGCCGGCAGGATACCCCCCAC-AGGAATACCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................AACACGGTCGGTTGTATCCT---....................................................................................................................................2015.005410000
.............................................................................................................................................TTCGAATCGAGCCCCAACACGGTC..................................................................................................................................................2414.004400000
.............................................................................................................................................................ACACGGTCGGTTGTATCCT---CG-A................................................................................................................................2212.002200000
.......................................................................CATCAGTTGGACCAGGCCC.............................................................................................................................................................................................................................1912.002200000
.........................................................................................................................................................CCCAACACGGTCGGTTGTATCCT---....................................................................................................................................2312.002200000
............................................................................................................................................................AACACGGTCGGTTGTATCCT---CG-A................................................................................................................................2312.002101000
...................................................................................................................................................................................................................................ATAATGCAAAACGATAAGTTC...............................................................2111.001010000
.............................................................................................................................................TTCGAATCGAGCCCCAACACGGTCG.................................................................................................................................................2511.001010000
..................................................................................................................................................................................................................................................................................GGCCCCGCCGGCAGGATACCCCCCA............2511.001010000
.......................................................................................................................................................GCCCCAACACGGTCGGTTGT............................................................................................................................................2011.001100000
......................................................................................................................................................................................................................................................................AGGCTTTTCCTCGGCCCCGCC............................2111.001010000
...............................................................................................................................................................................................................................................................................CTCGGCCCCGCCGGCAGGAT....................2011.001010000
..............................................................................................................................................................CACGGTCGGTTGTATCCT---C...................................................................................................................................1911.001100000
.......................................................................................................................................................................................................................................................................GGCTTTTCCTCGGCCCCGCCGGCA........................2411.001010000
...........................................................................................................................................................................................................................................AAACGATAAGTTCGCGGCT.........................................................1911.001010000
...................................................................................................................................................................................CG-AAAAA-----------GAAGCCGAGC------C................................................................................................1811.001001000
......................................................................................................................................................................................................................................................................AGGCTTTTCCTCGGCCCCGCCGG..........................2311.001010000
...................................................................................................................................................................................................................................................................AGCAGGCTTTTCCTCGGCCCCGCCG...........................2511.001010000
............................................................................................................................................................................................................................................AACGATAAGTTCGCGGCTC........................................................1911.001010000
...................................................................................................................................................TCGAGCCCCAACACGGTCGG................................................................................................................................................2011.001010000
.............................................................................................................................................................................................................................................ACGATAAGTTCGCGGCTCCGCCAGC.................................................2511.001001000
....................................................................................................................................................................................G-AAAAA-----------GAAGCCGAGC------CC...............................................................................................1811.001001000
....................................................................................................................................................................................................................................................GTTCGCGGCTCCGCCAGCAGGCT............................................2311.001010000
......................................................................................................................................................................GTTGTATCCT---CG-AAAAA-----------GAAGCC...........................................................................................................2311.001100000
............................................................................................................................................TTTCGAATCGAGCCCCAACACGGT...................................................................................................................................................2411.001010000
.........................................................................................................................................................CCCAACACGGTCGGTTGT............................................................................................................................................1811.001100000
........................................................................................................................................................................................................................................GCAAAACGATAAGTTCGCGGCT.........................................................2211.001010000
.............................................................................................................................................................ACACGGTCGGTTGTATCCT---....................................................................................................................................1911.001100000
...............................................................................................................................................................................................................................................................................CTCGGCCCCGCCGGCAGGATACCCC...............2511.001010000
droVir3
CGAAAAT-GAACGATAAATA----------------------------------------------------------------------------------------TTTGCCACCTGATCCACCGTCATA----------------------------------------------------------------------------------------------------------------------------------TGGCTTCACATCGGCA---------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................CCACCGTCATA----------------------------------------------------------------------------------------------------------------------------------TGGCTTCACATC.....................................2311.001100000000000000000000000000000000000000000000000000000000000000
..............TAAATA----------------------------------------------------------------------------------------TTTGCCACCTGATC.............................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.................ATA----------------------------------------------------------------------------------------TTTGCCACCTGATCCACCGTC......................................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
...................A----------------------------------------------------------------------------------------TTTGCCACCTGATCCACCGT.......................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
.................ATA----------------------------------------------------------------------------------------TTTGCCACCTGATCCACCGTCAT....................................................................................................................................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
............................................................................................................TTTGCCACCTGATCCACCGTCATA----------------------------------------------------------------------------------------------------------------------------------T................................................2511.001000000000000001000000000000000000000000000000000000000000000000

Generated: 05/18/2015 at 08:44 AM