dsi_25017

AAAAAAACGGTATATCTCATTCAAATTACTTAATATTGGAAAACGGAAATGTGAGTTTGATAGAGCTAAACGAACAAATCAGTCGAGATGCATTTTTTTAACGTTCCAGGTTTCATATATAAAATTTAAAATGTAAGAAAAAAGACAAAGAAAGTGATGACAAGCATTTTATATTTCTTTCACCAAGTGATTCAATACAATTCCAGTATTTTAACTTCCATTTAACCAACACTTAGGGAATGTTAATGTTCGTCACTCGTCTGCGGCAATTGCATGCTACGTCTCT ************************************************((..(((((.......)))))..)).....(((.(((((((.(((((((.(((((..((((((........))))))..))))).))))))).....((((((..((((.....)))).....))))))((((...))))...............))))))).)))....................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	O002 Head	SRR553488 RT_0-2 hours eggs	SRR902008 ovaries	SRR902009 testis
...........................................................................................................................................................................................................................................................GTTACTCGTCTGCGGCAA.................	18	1	1	1.00	1	0	0	1	0	0	0	0	0
.........................................................TGATAGAGCTAAACGAACAAATCAGT...........................................................................................................................................................................................................	26	0	1	1.00	1	0	1	0	0	0	0	0	0
......................................GAAAAGGGAAATGTGAGT......................................................................................................................................................................................................................................	18	1	1	1.00	1	1	0	0	0	0	0	0	0
...................................................TCAGTTGGATAGAGCAAAACGA.....................................................................................................................................................................................................................	22	3	4	0.25	1	0	0	0	1	0	0	0	0
...............................................................................CAGTCGAGATGTATTTTA.............................................................................................................................................................................................	18	2	4	0.25	1	0	0	0	0	1	0	0	0
.............................................GAACTGTGAGTTTGATC................................................................................................................................................................................................................................	17	2	9	0.11	1	0	0	0	0	0	1	0	0
..............TCTGATTCAAATTACT................................................................................................................................................................................................................................................................	16	1	9	0.11	1	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................TTTTAACTTCCAATTAAGCCA.........................................................	21	3	12	0.08	1	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................CATTCCAGTATTGTAAC.......................................................................	17	2	14	0.07	1	0	0	0	0	0	1	0	0
...............................................................................CAGTAGAGAAGCAATTTTTT...........................................................................................................................................................................................	20	3	17	0.06	1	0	0	0	0	0	0	0	1
....................................TGGAAAAAGGAAGGGTGAGT......................................................................................................................................................................................................................................	20	3	17	0.06	1	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................ATTTTAAATTCCAATTAACCCA.........................................................	22	3	18	0.06	1	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................TTTTAAATTCCAATTAACCCA.........................................................	21	3	20	0.05	1	1	0	0	0	0	0	0	0

TTTTTTTGCCATATAGAGTAAGTTTAATGAATTATAACCTTTTGCCTTTACACTCAAACTATCTCGATTTGCTTGTTTAGTCAGCTCTACGTAAAAAAATTGCAAGGTCCAAAGTATATATTTTAAATTTTACATTCTTTTTTCTGTTTCTTTCACTACTGTTCGTAAAATATAAAGAAAGTGGTTCACTAAGTTATGTTAAGGTCATAAAATTGAAGGTAAATTGGTTGTGAATCCCTTACAATTACAAGCAGTGAGCAGACGCCGTTAACGTACGATGCAGAGA ************************************************((..(((((.......)))))..)).....(((.(((((((.(((((((.(((((..((((((........))))))..))))).))))))).....((((((..((((.....)))).....))))))((((...))))...............))))))).)))....................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries
...........................................................................................................................................................................................................................TTAATTGGTAGTGAATGCCTT..............................................	21	3	1	2.00	2	2	0	0	0	0
..................................................................................................ATTGCAATGACCAAAGTGTA........................................................................................................................................................................	20	3	5	0.40	2	0	2	0	0	0
...............................................................................................................................................................................AGAAGGTGGTTCAGTAAGTTT..........................................................................................	21	3	4	0.25	1	0	0	1	0	0
.............................................................................................................................................................................AGAGAAGGTGGTTCAGTAAGT............................................................................................	21	3	5	0.20	1	0	0	0	1	0
............................................................................................................................AAATTTTTCATTCTTTTTTAGGTT..........................................................................................................................................	24	3	6	0.17	1	0	0	0	0	1
.................................................................................................................................................................................AAGGTGGTTCAGTAAGTTTT.........................................................................................	20	3	20	0.15	3	0	0	0	3	0
..............................................................................................AAATATTGCAATGACCAAAGT...........................................................................................................................................................................	21	3	9	0.11	1	0	1	0	0	0
...............................................................................................................................................................................AGAAGGTGCTTCAGTAAGTT...........................................................................................	20	3	14	0.07	1	0	0	0	1	0
........................................................................................................................................................................................................................................................AAGCGGTGAGCAGTCGC.....................	17	2	15	0.07	1	0	0	1	0	0
.........................................TTGCCTATCCACTCAAA....................................................................................................................................................................................................................................	17	2	18	0.06	1	0	0	1	0	0
.......................................................................TTTGTTTAGTCACCTCTA.....................................................................................................................................................................................................	18	2	20	0.05	1	0	0	1	0	0

Species	Coordinate	ID	Alignment
droSim2	2l:21395960-21396245 +	dsi_25017	AAAA-AA-ACGGTATATCTCATTCAAATTACTTAATAT---------------------------TGGA--------AAACGGAAATGTGAGTTTGATA----------------------------------------------------------------------------------------------GAGCTAAACGAACAAATCAGTCGAGATGCATTTTTTTA------------------------------------------------------------------------------ACGTTCCAGGTTTCA--------------------TATATAAAATTTAAAATG-TA----------------------------AGAAAAA------------------------------------------AGACAAAGAAAGTGATGACAAGC-------A----------------------TTTTATATTTCTTTCACCAAGTGATTCA-----------------------------A-----TACAATTCCAGTATTTTAACTTCC----ATTTAACCA--ACACTTAGGGAATGTTAATGTTCGTC-ACTCGTCTGCGGCAATTGCATGCTACGTCTCT
droSec2	scaffold_28:739802-740087 +		AAAAAAA-ACGGTATATCTCATTCAAATTACTTAATAT---------------------------TGGA--------AAACGGAAATGTGAGTTTGATA----------------------------------------------------------------------------------------------GAACTAAACGAACAAATCAGTCGAGGTGCATTTTT-TA------------------------------------------------------------------------------ACGTTCCAGGTTTAA--------------------TTTATAAAATTAGAAATG-TA----------------------------AGAAAAA------------------------------------------AGACAAAGAAAGTGATGACAAGC-------A----------------------TTTTATATTTCTTTCACCAAGTGATTCA-----------------------------A-----TACAATTCCAGTATTTTAACTTCC----ATTTAACCA--ACACTTAGGGAATGTGAATGTTCGTC-ACTCGTCTGCGGCAATTGCATGCTACGTCTCT
dm3	chr2L:22131212-22131353 +		AGTG-AT-AACAAACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATATTTCTTTCACCAAGTGATTCAGTATATGT---------------------A-----TACAATTCTAGTATTTTAACTTCT----ATTTAACGA--GCACTTAGGGAATGTGAATTTCCGTC-ATTCGACTGCGCCAATTGCATGCTAAGTATTT
droEre2	scaffold_4845:2287122-2287336 -		ATTT-TT-TT-----------------------AATAT---------------------------TAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAT----------------------------------TACAAATTTAA----------------------------GAAAAAA------------------------------------------AGAAAAACTCATTAATAACAAAGTAAAATTA--TTAAA---------------TTTTTTTCTTTTTTCACCAAATGATTTAGTAAATTTATATAGTGAAAGTATTTATCAA-----T-CAATTCCAATATTTTAACTTCATTGTTTTT-AAAAATACAC---------------GTTGGTGAATTCGTCTGCGGATACTGCATGTTACGCCTTT
droYak3	v2_chrUn_1057:19123-19330 +		CAGA-AT-GCTGTGTATTTTGATCTGA--------GC-TTGATTGTTCTATATCGCTGTTTGTAA---T--------ATTA-TTTAATTTTATT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAACGACAT------------------------------------------------TTGT-----------------TGTTCC-GGCTTTA--------------------------------------------TATATTATTTATTCTACGAGATTTTAAA------------AGATAAAG--ATTG---ATGGTC-------TTTTTGTATTTCTATACCGATTACTCCATA--------------------T-----------------------------A-----AATAATTTCTGTGAT---------------------T------------------------------------------------------------T
droEug1	scf7180000407335:41043-41221 +		ATTT-AT-CG------TATTGTTTAAATTTCTTTTAAT---------------------------CAATAATTAGATGAATGTGAACTTTAATATCACA----------------------------------------------------------------------------------------------AAATTGAAAAGTTAAAAAAATTGGAAAA-----------------ATTTCTCGTTC---------------------------------------------------------------TTCCATTTTT--------------------------------------------------------------------------------TGTACTTTTTTTTCACAAAAATTATAAAACGAAAAGAAGTGAGCAGAGAAACAAATAAGAATT-------A----------------------C---------------------------------------------------------------------------------------------------------------------------------------------------------------T
droBia1	scf7180000302037:20812-20911 -		TAAG-AA-GAAC--------------------------------------------------------------------------------------------------------------------------------------------------AATAAGAACAATAGTCAATCTTTAAAAAATTAATATAATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTTTCTCACTGAGTTTGTCA-----------------------------A-----TATAATTCTGCCATCTCGACTTCC----A--------------------------------------------------------------------T
droTak1	scf7180000415834:34593-34804 -		AAAT-AA-CTGTTATCTGTCAATCAAAAAATAA--AAC---------------------------TAAA--------CAACTAAACTAAAATATTGGTGTATTCACCAAATTTTTTGAACGCTTCAAAGTGCATGATTTTTTTGTAAGAAAAATGAACAATAACAGTTATTTTCGGTCCCTGGTACAT---------------------------------------------------------------------------TTTT--------CTTTACTGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTCAATTTATTTT-----------------------------C-----CCTACTTT---TATCGTAATTTCT----CCTAAACCA------------------------------------------------------------A
droEle1	scf7180000491000:831167-831268 -		ATAT-AT-AG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGATATATG-CA----------------------------AAAATGA------------------------------------------AAAGAAACACATTTATTACAAGC-------A----------------------TTTTATATAATTTACAAATATTG----T-----------------------------ACTCAAT--------AATTTTTTAATTGCC----AGT------------------------------------------------------------------T
droRho1	scf7180000777096:28740-28906 -		GGAG-TT-ATACCTG---------------TTTAATGT---------------------------TGAA--------AATTAGGTGTGTGTATGTCATA----------------------------------------------------------------------------------------------GAAAAAATA------------------------------CGATT------------AAAAAATGGATTTGTATTT------------------------------------------------TCGTTTCA---------------------------AATGTATATTT-TATAAAATAAAGAATGTAGAAATTATTAAT--ATTCT------------------------------------------AATTAAAACTAATTATAATAATT-------A----------------------TTTTATGT--------------------------------------------------------------------------------------------------------------------------------------------------------T
droFic1	scf7180000454068:65926-65993 -		GTTA-AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTCACGTTT---------------------------CAAATTTAAAACT-AA----------------------------AAAAAAA------------------------------------------CAACGACGAAAGCTTTGACAAAG-------C----------------------TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------T
droKik1	scf7180000302470:1946864-1946967 +		AGAG-TT-AGAGCAAATTGA---------------AAC---------------------------TGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAATTCAATGTGT-------------TTAA-------------------------------------------ATTTTCCAGGTCTTT--------------------TATATTAAATCTTAATTA-TT----------------------------ATAGCCA------------------------------------------AAGCCAAGAACACGGT----------------------------------------------------------------------------------------------------------------------------------------G------------------------------------------------------------A
droAna3	scaffold_13089:212825-212931 -		CATT-TC-TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA------------------------------------------------------------------------------AAATTATATTATTTT--------------------TCAATAAAATTTATAATT-AA----------------------------AAAAAAAAA-------------ATATTTTATTTTAAG------------AA--ATAAAAAATAATAATAGAC-------C----------------------ACTCCTCTTTTTTTT-------------------------------------------------------------------------------------------------------------------------------------------------A
droBip1	scf7180000391411:4714-4862 +		AAAA-AA-CTGTATG-GTATGGT---------AAAATT---------------------------TAAA--------AAATAAATATTTACATTTTAAA----------------------------------------------------------------------------------------------AAATAA---------------------------------TGATT------------AAAAAAAAAATCGGTAAAAATGATAT------------------------------------------------AAATTATCAATTAAATTTTATACAAAAAAAATTAAAATT-TA----------------------------AAAAAAA------------------------------------------AAAACAAGAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
dp5	XL_group1a:3567005-3567105 -		ATTA-TT-A------------------------AATAT---------------------------TCGG--------GGCTTAAGA----AATTTAATA----------------------------------------------------------------------------------------------GAATTCACTT--TAACTCAATTAAAAAGTCTTTTTAAT------------------------------------------------------------------------------ACGCCCCATATTTAG--------------------TATATAAAACTTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------A
droPer2	scaffold_7440:511-590 +		TCAA-TT-AAAATTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTCGATTATCGTTCTCGTCCAAAAATTTAAAATT-TA----------------------------AAAAAAA------------------------------------------AAAAAAAATAAATAAAAAT-------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------A
droWil2	scf2_1100000004762:819285-819469 -		CAAA-AA-ACATGACATTTCGTATAAATTTTTTAACAT---------------------------TTCG--------AAACGCAAACTAGA---------------------------------------------------------------------------------------------------TCGGCCTG--------------------CTGTTTTTTTATT---------------------------GCCACTGAG--------CATAACAGGTTCTCATTTTAAAAAGAAG--ATTCAA------------A--------------------TGGGAA-GATTCAATGAG-GA----------------------------AAAGCAA------------------------------------------AAGAAAATAACAAAAC---AAAA-------A--TTCGA---------------TT---TATTTTTTTTA------------------------------------------------------------------------------------------------------------------------------------------------C
droVir3	scaffold_13050:3200075-3200212 -		TAAA-AA-ACAGTTTATATTAACCAACTAACTACTAAC---------------------------TGAA--------AAAATATTATATACATTTGATACAGCATGAACTCTTTTAAAATGG--------------------------------------------------------------------------------------------------------------------------------------------TTAAAAACGGCAT------------------------------------------------GTTT-----------------TGTAAAAATGTTGATATA-TA----------------------------GTACAAA------------------------------------------ATATAGA-------------------------------------------------------------------------------------------------------------------------------------------------G------------------------------------------------------------A
droMoj3	scaffold_6500:25331671-25331869 -		AAAG-AGCAGCAGACATCAAGACTTAA--------AT-TCTGCTACTCTTTACTGGTAT------TTGG--------AGTT-CATATGCACGTTTTAGT----------------------------------------------------------------------------------------------AATT------------------------------------------------------------------TGA-AT------TACCACAATTTATTATATTAAAATGCATTGATTAATTATTGACATTT----------------------------CAATTTAAATTA-AA----------------------------AGAAAAA------------------------------------------ACAAAAACATTTTAATTAAAATT-------A----------------------TTTTGTATGCTGTTGCTCAAAT-----------------------------------------------------------------------------G------------------------------------------------------------A
droGri2	scaffold_9485:51264-51378 -		AATT-GC-A-----------------------TTTTAT---------------------------TGAA--------ATTGAAATGTAAGTCAGTAATA----------------------------------------------------------------------------------------------AA-T------------------GGAA-----AT-----GCGAC-------------------------------------------------------------------------ACACTCCAAAATTCG--------------------TGCACA-CATTTAATGCG-CA----------------------------AAAAAAA------------------------------------------AGCCGAAGAAAACGACAAC-------------------------------------------------------------------------------------------------------------------------------------G------------------------------------------------------------A

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AAAA-AA-ACGGTATATCTCATTCAAATTACTTAATAT---------------------------TGGA--------AAACGGAAATGTGAGTTTGATA----------------------------------------------------------------------------------------------GAGCTAAACGAACAAATCAGTCGAGATGCATTTTTTTA------------------------------------------------------------------------------ACGTTCCAGGTTTCA--------------------TATATAAAATTTAAAATG-TA----------------------------AGAAAAA------------------------------------------AGACAAAGAAAGTGATGACAAGC-------A----------------------TTTTATATTTCTTTCACCAAGTGATTCA-----------------------------A-----TACAATTCCAGTATTTTAACTTCC----ATTTAACCA--ACACTTAGGGAATGTTAATGTTCGTC-ACTCGTCTGCGGCAATTGCATGCTACGTCTCT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................................................................TGATA----------------------------------------------------------------------------------------------GAGCTAAACGAACAAATCAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

AAAAAAA-ACGGTATATCTCATTCAAATTACTTAATAT---------------------------TGGA--------AAACGGAAATGTGAGTTTGATA----------------------------------------------------------------------------------------------GAACTAAACGAACAAATCAGTCGAGGTGCATTTTT-TA------------------------------------------------------------------------------ACGTTCCAGGTTTAA--------------------TTTATAAAATTAGAAATG-TA----------------------------AGAAAAA------------------------------------------AGACAAAGAAAGTGATGACAAGC-------A----------------------TTTTATATTTCTTTCACCAAGTGATTCA-----------------------------A-----TACAATTCCAGTATTTTAACTTCC----ATTTAACCA--ACACTTAGGGAATGTGAATGTTCGTC-ACTCGTCTGCGGCAATTGCATGCTACGTCTCT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

AGTG-AT-AACAAACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATATTTCTTTCACCAAGTGATTCAGTATATGT---------------------A-----TACAATTCTAGTATTTTAACTTCT----ATTTAACGA--GCACTTAGGGAATGTGAATTTCCGTC-ATTCGACTGCGCCAATTGCATGCTAAGTATTT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGACTGCGCCAATTGCATG..........	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGA--GCACTTAGGGAATGTG...........................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACGA--GCACTTAGGGAATG.............................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACGA--GCACTTAGGGAATGTGA..........................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACTGCGCCAATTGCA............	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

ATTT-TT-TT-----------------------AATAT---------------------------TAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAT----------------------------------TACAAATTTAA----------------------------GAAAAAA------------------------------------------AGAAAAACTCATTAATAACAAAGTAAAATTA--TTAAA---------------TTTTTTTCTTTTTTCACCAAATGATTTAGTAAATTTATATAGTGAAAGTATTTATCAA-----T-CAATTCCAATATTTTAACTTCATTGTTTTT-AAAAATACAC---------------GTTGGTGAATTCGTCTGCGGATACTGCATGTTACGCCTTT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droYak3

CAGA-AT-GCTGTGTATTTTGATCTGA--------GC-TTGATTGTTCTATATCGCTGTTTGTAA---T--------ATTA-TTTAATTTTATT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAACGACAT------------------------------------------------TTGT-----------------TGTTCC-GGCTTTA--------------------------------------------TATATTATTTATTCTACGAGATTTTAAA------------AGATAAAG--ATTG---ATGGTC-------TTTTTGTATTTCTATACCGATTACTCCATA--------------------T-----------------------------A-----AATAATTTCTGTGAT---------------------T------------------------------------------------------------T	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....................................................................................................................................................................................................TAAT------------------------------GCGAC----------------------------AGGAACGACAT------------------------------------------------TTGT-----------------TGT.....................................................................................................................................................................................................................................................................................................................	27	1	204.00	204	0	1	0	0	0	0	0	0	0	0	203
........................................................................................................................................................................................................T------------------------------GCGAC----------------------------AGGAACGACAT------------------------------------------------TTGT-----------------TGTTC...................................................................................................................................................................................................................................................................................................................	26	1	134.00	134	0	16	0	0	0	0	0	0	0	0	118
........................................................................................................................................................................................................T------------------------------GCGAC----------------------------AGGAACGACAT------------------------------------------------TTGT-----------------TGTT....................................................................................................................................................................................................................................................................................................................	25	1	77.00	77	0	1	0	0	0	0	0	0	0	0	76
..........................................................................................TATT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAACGACA..............................................................................................................................................................................................................................................................................................................................................................................................	28	1	73.00	73	0	3	0	0	0	0	1	0	0	0	69
............................................................................................TT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAACGACAT------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................	27	1	62.00	62	0	4	0	0	0	0	0	0	0	0	58
........................................................................................................................................................................................................T------------------------------GCGAC----------------------------AGGAACGACAT------------------------------------------------TTGT-----------------TGTTCC-.................................................................................................................................................................................................................................................................................................................	27	1	50.00	50	0	8	1	0	0	0	0	0	0	0	41
.......................................................................................TTTTATT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAA...................................................................................................................................................................................................................................................................................................................................................................................................	26	1	34.00	34	0	0	0	0	0	0	0	0	0	0	34
.............................................................................................T----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAACGACAT------------------------------------------------T............................................................................................................................................................................................................................................................................................................................................	27	1	32.00	32	0	1	0	0	0	0	0	0	0	0	31
............................................................................................TT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAACGACA..............................................................................................................................................................................................................................................................................................................................................................................................	26	1	24.00	24	0	8	0	0	0	0	0	0	0	0	16
.............................................................................................T----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAACGACA..............................................................................................................................................................................................................................................................................................................................................................................................	25	1	18.00	18	0	0	0	0	0	0	0	0	0	0	18
.....................................................................................................................................................................................................TAAT------------------------------GCGAC----------------------------AGGAACGACAT------------------------------------------------TTGT-----------------........................................................................................................................................................................................................................................................................................................................	24	1	16.00	16	0	1	0	0	0	0	0	0	0	0	15
.............................................................................................T----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAACGACAT------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................	26	1	15.00	15	0	0	0	0	0	0	0	0	0	0	15
............................................................................................TT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAACGACAT------------------------------------------------T............................................................................................................................................................................................................................................................................................................................................	28	1	15.00	15	0	2	0	0	0	0	0	0	0	0	13
.........................................................................................TTATT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAACGACAT------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................	30	1	13.00	13	0	0	0	0	0	0	0	0	0	0	13
............................................................................................TT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAACGAC...............................................................................................................................................................................................................................................................................................................................................................................................	25	1	12.00	12	0	0	0	0	0	0	0	0	0	0	12
........................................................................................TTTATT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAACGA................................................................................................................................................................................................................................................................................................................................................................................................	28	1	12.00	12	0	0	0	0	0	0	0	0	0	0	12
.....................................................................................................................................................................................................TAAT------------------------------GCGAC----------------------------AGGAACGACAT------------------------------------------------TTGT-----------------TG......................................................................................................................................................................................................................................................................................................................	26	1	12.00	12	0	5	0	0	0	0	1	0	0	0	6
..........................................................................................TATT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAACGACAT------------------------------------------------T............................................................................................................................................................................................................................................................................................................................................	30	1	11.00	11	0	0	0	0	0	0	0	0	0	0	11
........................................................................................TTTATT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAACGACA..............................................................................................................................................................................................................................................................................................................................................................................................	30	1	10.00	10	0	0	0	0	0	0	0	0	0	0	10
.........................................................................................TTATT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAACGA................................................................................................................................................................................................................................................................................................................................................................................................	27	1	9.00	9	0	2	0	0	0	0	0	0	0	0	7
....................................................................................TAATTTTATT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAA...................................................................................................................................................................................................................................................................................................................................................................................................	29	1	9.00	9	0	0	0	0	0	0	0	0	0	0	9
.......................................................................................TTTTATT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAAC..................................................................................................................................................................................................................................................................................................................................................................................................	27	1	9.00	9	0	0	0	0	0	0	1	0	0	0	8
.............................................................................................................................................................................................................................................................................................................................................................................................................................TTCTACGAGATTTTAAA------------AGATAAAG--AT..........................................................................................................................................................................................................	27	1	8.00	8	0	1	0	0	0	0	0	0	0	0	7
..........................................................................................TATT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAACGAC...............................................................................................................................................................................................................................................................................................................................................................................................	27	1	8.00	8	0	2	0	0	0	0	0	0	0	0	6
........................................................................................TTTATT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAACGACAT------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................	31	1	7.00	7	0	0	0	0	0	0	0	0	0	0	7
...........................................................................................ATT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAACGA................................................................................................................................................................................................................................................................................................................................................................................................	25	1	7.00	7	0	0	0	0	0	0	0	0	0	0	7
........................................................................................TTTATT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAAC..................................................................................................................................................................................................................................................................................................................................................................................................	26	1	7.00	7	0	2	0	0	0	0	1	0	0	0	4
..............................................................................................................................................................................................................................................................................................................................................................................................................................TCTACGAGATTTTAAA------------AGATAAAG--AT..........................................................................................................................................................................................................	26	1	6.00	6	0	0	0	0	0	0	0	0	0	0	6
..........................................................................................TATT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAACGACAT------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................	29	1	6.00	6	0	0	0	0	0	0	0	0	0	0	6
......................................................................................................................................................................................................AAT------------------------------GCGAC----------------------------AGGAACGACAT------------------------------------------------TTGT-----------------TGT.....................................................................................................................................................................................................................................................................................................................	26	1	6.00	6	0	2	0	0	0	0	0	0	0	0	4
.......................................................................................................................................................................................................................................................................................................................................................................................................................TATTTATTCTACGAGATTTTAAA------------AGA...................................................................................................................................................................................................................	26	1	6.00	6	0	0	0	0	0	0	0	0	0	0	6
..........................................................................................TATT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAACGA................................................................................................................................................................................................................................................................................................................................................................................................	26	1	5.00	5	0	0	0	0	0	0	0	0	0	0	5
....................................................................................TAATTTTATT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGG.....................................................................................................................................................................................................................................................................................................................................................................................................	27	1	4.00	4	0	3	0	0	0	1	0	0	0	0	0
........................................................................................TTTATT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAA...................................................................................................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4
........................................................................................................................................................................................................T------------------------------GCGAC----------------------------AGGAACGACAT------------------------------------------------TTGT-----------------TGT.....................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	4	0	0	0	0	0	0	0	0	0
..........................................................................................TATT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAACG.................................................................................................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4
....................................................................................TAATTTTATT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGA....................................................................................................................................................................................................................................................................................................................................................................................................	28	1	3.00	3	0	2	0	0	0	0	0	0	0	0	1
.....................................................................................................................................................................................................TAAT------------------------------GCGAC----------------------------AGGAACGACA..............................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3
.............................................................................................T----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AG......................................................................................................................................................................................................................................................................................................................................................................................................	17	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAAA------------AGATAAAG--ATTG---ATGGTC-------........................................................................................................................................................................................	25	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
.........................................................................................TTATT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAAC..................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TAAA------------AGATAAAG--ATTG---ATGGTC-------TTTTT...................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2
................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAGATTTTAAA------------AGATAAAG--ATTG---A....................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTACGAGATTTTAAA------------AGATAAAG--AT..........................................................................................................................................................................................................	29	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2
.......................................................................................................................................................................................................AT------------------------------GCGAC----------------------------AGGAACGACAT------------------------------------------------TTGT-----------------TGTTC...................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2
........................................................................................................................................................................................................T------------------------------GCGAC----------------------------AGGAACGACAT------------------------------------------------TTGT-----------------TG......................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.....................................................................................AATTTTATT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGG.....................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................TTAATTTTATT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------A.......................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAG--ATTG---ATGGTC-------TTTTTGTATT..............................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCCATA--------------------T-----------------------------A-----AATAATTTCTGTGAT---------------------T------------------------------------------------------------T	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................T------------------------------------------------TTGT-----------------TGTTCC-GGCTTTA--------------------------------------------TATATTATT.....................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---ATGGTC-------TTTTTGTATTTCTATACC......................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................TTATT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAACGACA..............................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAA------------AGATAAAG--ATTG---ATGGTC-------........................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GCGAC----------------------------AGGAACGACAT------------------------------------------------TTGT-----------------TGTTC...................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................TTTAATTTTATT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................AT------------------------------GCGAC----------------------------AGGAACGACAT------------------------------------------------TTGT-----------------TGT.....................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTC-------TTTTTGTATTTCTATACCGAT...................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................T-----------------TGTTCC-GGCTTTA--------------------------------------------TATATTATTTA...................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................TATTTATTCTACGAGATTTTAAA------------AGAT..................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTATTTCTATACCGATTACTCCATA--------------------......................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GCGAC----------------------------AGGAACGACAT------------------------------------------------TTGT-----------------TGTT....................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................ATT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAACGACA..............................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................T----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAACGAC...............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTACGAGATTTTAAA------------AGATAAAG--A...........................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---ATGGTC-------TTTTTGTATTTCTATAC.......................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTC-------TTTTTGTATTTCTATACCGA....................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................TT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCGAC----------------------------AGGAACGA................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG---ATGGTC-------TTTTTGTATTTCTATACC......................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTATTTCTATACCGATTACTCCA............................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AAA------------AGATAAAG--ATTG---ATGGTC-------TTTT....................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGATTTTAAA------------AGATAAAG--AT..........................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................GAGATAAT------------------------------GCGAC----------------------------AGGAACGACAT------------------------------------------------T............................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................TTGTAA---T--------ATTA-TTTAATTTTATT----C----------------------------------------------------------------------------------------------GAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1
......................TCTGA--------GC-TTGATTGTTCTATATCGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.30	6	0	2	0	0	0	0	0	0	0	0	4
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATTTCTATACCGATTACTCCATA--------------------......................................................................................................................................	26	20	0.25	5	0	5	0	0	0	0	0	0	0	0	0
.............................................TTCTATATCGCTGTTTGTAA---T--------ATTA-TT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...........................................TGTTCTATATCGCTGTTTGTAA---T--------ATTA-TT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
..GA-AT-GCTGTGTATTTTGATCTGA--------GC-T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.20	4	0	0	4	0	0	0	0	0	0	0	0
..........................................TTGTTCTATATCGCTGTTTGTAA---T--------ATTA-T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
..............TATTTTGATCTGA--------GC-TTGATTGTTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.20	4	0	3	0	0	0	1	0	0	0	0	0
......T-GCTGTGTATTTTGATCTGA--------GC-TTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
..................................................TATCGCTGTTTGTAA---T--------ATTA-TT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.......................................TGATTGTTCTATATCGCTGTTTGTAA---T--------A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
.................TTTGATCTGA--------GC-TTGATTGTTCTATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3
...............................................................................TA-TTTAATTTTATT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCG......................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATACCGATTACTCCATA--------------------T-----------------------------A-----AATAAT............................................................................................	28	20	0.15	3	0	1	1	0	0	0	0	0	0	0	1
............TGTATTTTGATCTGA--------GC-TTGATTGTTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.15	3	0	1	0	0	0	0	2	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTATACCGATTACTCCATA--------------------T-----------------------------A-----AATAAT............................................................................................	29	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..GA-AT-GCTGTGTATTTTGATCTGA--------GC-C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
......T-GCTGTGTATTTTGATCTGA--------GC-TTGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.10	2	0	1	0	0	0	0	1	0	0	0	0
..........TGTGTATTTTGATCTGA--------GC-TTGATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..............TATTTTGATCTGA--------GC-TTGATTGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
................TTTTGATCTGA--------GC-TTGATTGTTCTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...................TGATCTGA--------GC-TTGATTGTTCTATATCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCTATACCGATTACTCCATA--------------------T-----------------------------A-----..................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGATTACTCCATA--------------------T-----------------------------A-----AATAAT............................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................TTTAATTTTATT----C----------------------------------------------------------------------------------------------GAGATAAT------------------------------GCG......................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................TCTGA--------GC-TTGATTGTTCTATATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................TTTGATCTGA--------GC-TTGATTGTTCTATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGATTACTCCATA--------------------T-----------------------------A-----AATAC.............................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........GTGTATTTTGATCTGA--------GC-TTGATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................TTTTGATCTGA--------GC-TTGATTGTTCTATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATACCGATTACTCCATA--------------------T-----------------------------A-----AATAA.............................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGATTACTCCATA--------------------T-----------------------------A-----AATAATT...........................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............TGTATTTTGATCTGA--------GC-TTGATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
............TGTATTTTGATCTGA--------GC-TTGATTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0
..........TGTGTATTTTGATCTGA--------GC-TTGATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..GA-AT-GCTGTGTATTTTGATCTGA--------GC-..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

ATTT-AT-CG------TATTGTTTAAATTTCTTTTAAT---------------------------CAATAATTAGATGAATGTGAACTTTAATATCACA----------------------------------------------------------------------------------------------AAATTGAAAAGTTAAAAAAATTGGAAAA-----------------ATTTCTCGTTC---------------------------------------------------------------TTCCATTTTT--------------------------------------------------------------------------------TGTACTTTTTTTTCACAAAAATTATAAAACGAAAAGAAGTGAGCAGAGAAACAAATAAGAATT-------A----------------------C---------------------------------------------------------------------------------------------------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TAAG-AA-GAAC--------------------------------------------------------------------------------------------------------------------------------------------------AATAAGAACAATAGTCAATCTTTAAAAAATTAATATAATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTTTCTCACTGAGTTTGTCA-----------------------------A-----TATAATTCTGCCATCTCGACTTCC----A--------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAAT-AA-CTGTTATCTGTCAATCAAAAAATAA--AAC---------------------------TAAA--------CAACTAAACTAAAATATTGGTGTATTCACCAAATTTTTTGAACGCTTCAAAGTGCATGATTTTTTTGTAAGAAAAATGAACAATAACAGTTATTTTCGGTCCCTGGTACAT---------------------------------------------------------------------------TTTT--------CTTTACTGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTCAATTTATTTT-----------------------------C-----CCTACTTT---TATCGTAATTTCT----CCTAAACCA------------------------------------------------------------A	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATAT-AT-AG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGATATATG-CA----------------------------AAAATGA------------------------------------------AAAGAAACACATTTATTACAAGC-------A----------------------TTTTATATAATTTACAAATATTG----T-----------------------------ACTCAAT--------AATTTTTTAATTGCC----AGT------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GGAG-TT-ATACCTG---------------TTTAATGT---------------------------TGAA--------AATTAGGTGTGTGTATGTCATA----------------------------------------------------------------------------------------------GAAAAAATA------------------------------CGATT------------AAAAAATGGATTTGTATTT------------------------------------------------TCGTTTCA---------------------------AATGTATATTT-TATAAAATAAAGAATGTAGAAATTATTAAT--ATTCT------------------------------------------AATTAAAACTAATTATAATAATT-------A----------------------TTTTATGT--------------------------------------------------------------------------------------------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GTTA-AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTCACGTTT---------------------------CAAATTTAAAACT-AA----------------------------AAAAAAA------------------------------------------CAACGACGAAAGCTTTGACAAAG-------C----------------------TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGAG-TT-AGAGCAAATTGA---------------AAC---------------------------TGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAATTCAATGTGT-------------TTAA-------------------------------------------ATTTTCCAGGTCTTT--------------------TATATTAAATCTTAATTA-TT----------------------------ATAGCCA------------------------------------------AAGCCAAGAACACGGT----------------------------------------------------------------------------------------------------------------------------------------G------------------------------------------------------------A	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CATT-TC-TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA------------------------------------------------------------------------------AAATTATATTATTTT--------------------TCAATAAAATTTATAATT-AA----------------------------AAAAAAAAA-------------ATATTTTATTTTAAG------------AA--ATAAAAAATAATAATAGAC-------C----------------------ACTCCTCTTTTTTTT-------------------------------------------------------------------------------------------------------------------------------------------------A	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

AAAA-AA-CTGTATG-GTATGGT---------AAAATT---------------------------TAAA--------AAATAAATATTTACATTTTAAA----------------------------------------------------------------------------------------------AAATAA---------------------------------TGATT------------AAAAAAAAAATCGGTAAAAATGATAT------------------------------------------------AAATTATCAATTAAATTTTATACAAAAAAAATTAAAATT-TA----------------------------AAAAAAA------------------------------------------AAAACAAGAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G	Size	Hit Count	Total Norm	Total
No Reads

dp5

ATTA-TT-A------------------------AATAT---------------------------TCGG--------GGCTTAAGA----AATTTAATA----------------------------------------------------------------------------------------------GAATTCACTT--TAACTCAATTAAAAAGTCTTTTTAAT------------------------------------------------------------------------------ACGCCCCATATTTAG--------------------TATATAAAACTTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------A

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

TCAA-TT-AAAATTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTCGATTATCGTTCTCGTCCAAAAATTTAAAATT-TA----------------------------AAAAAAA------------------------------------------AAAAAAAATAAATAAAAAT-------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------A	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.............TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTCGATTATCGTTCTCG.......................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
........AAAATTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTCGATTATCGTTC..........................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0

droWil2

CAAA-AA-ACATGACATTTCGTATAAATTTTTTAACAT---------------------------TTCG--------AAACGCAAACTAGA---------------------------------------------------------------------------------------------------TCGGCCTG--------------------CTGTTTTTTTATT---------------------------GCCACTGAG--------CATAACAGGTTCTCATTTTAAAAAGAAG--ATTCAA------------A--------------------TGGGAA-GATTCAATGAG-GA----------------------------AAAGCAA------------------------------------------AAGAAAATAACAAAAC---AAAA-------A--TTCGA---------------TT---TATTTTTTTTA------------------------------------------------------------------------------------------------------------------------------------------------C	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

TAAA-AA-ACAGTTTATATTAACCAACTAACTACTAAC---------------------------TGAA--------AAAATATTATATACATTTGATACAGCATGAACTCTTTTAAAATGG--------------------------------------------------------------------------------------------------------------------------------------------TTAAAAACGGCAT------------------------------------------------GTTT-----------------TGTAAAAATGTTGATATA-TA----------------------------GTACAAA------------------------------------------ATATAGA-------------------------------------------------------------------------------------------------------------------------------------------------G------------------------------------------------------------A	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................................TATACATTTGATACAGCATGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AAAG-AGCAGCAGACATCAAGACTTAA--------AT-TCTGCTACTCTTTACTGGTAT------TTGG--------AGTT-CATATGCACGTTTTAGT----------------------------------------------------------------------------------------------AATT------------------------------------------------------------------TGA-AT------TACCACAATTTATTATATTAAAATGCATTGATTAATTATTGACATTT----------------------------CAATTTAAATTA-AA----------------------------AGAAAAA------------------------------------------ACAAAAACATTTTAATTAAAATT-------A----------------------TTTTGTATGCTGTTGCTCAAAT-----------------------------------------------------------------------------G------------------------------------------------------------A	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

AATT-GC-A-----------------------TTTTAT---------------------------TGAA--------ATTGAAATGTAAGTCAGTAATA----------------------------------------------------------------------------------------------AA-T------------------GGAA-----AT-----GCGAC-------------------------------------------------------------------------ACACTCCAAAATTCG--------------------TGCACA-CATTTAATGCG-CA----------------------------AAAAAAA------------------------------------------AGCCGAAGAAAACGACAAC-------------------------------------------------------------------------------------------------------------------------------------G------------------------------------------------------------A	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_25017

2l:21396010-21396195 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-20.6	-20.5	-20.5