ID:

dsi_25015

 Coordinate:

2r:14058853-14059104 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.1 -4.0 -3.7

Flybase annnotation

exon [2r_14059105_14059179_-]; CDS [2r_14059105_14059179_-]; exon [2r_14058781_14058852_-]; CDS [2r_14058781_14058852_-]; intron [2r_14058853_14059104_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AATGAAAAGAGATTACTACAGGGGCTCGCAAGACTCCCTCACTGTAAAAGGTAATTTATGTTTTTGTTATTTTACCCTCATTGCATTGTCTTATATTTCATCTGTTGTAGTTTGATCTAAGTTAAGCATGTTTAGTTAAACTTTAAGTTCATTTTGTATCTGGCCACTTTCCGATAAATGGGTCTTAGAATCTAACTATTTGAATTGCACCTGTACTTGAATGTAGCTCTAAGTTTTCTTAATAACTATGGTATTTGGACAACCTATTTGATAAGACATAACAACTAATCTCGTTTAAACAGAGTCACCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGACGACGG
***************************************************************************************************************************************************************************************************************************.............(((.(((((.(((.((.(((.........))))).))).)))))...)))....****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M023
head
 M053
female body
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 SRR618934
dsim w501 ovaries
.........................................................................................................................................................................................................................................................................................................................................GTTCAAATCCGATTGGAAG.... 19 2 3 5.67 17 14 0 0 3 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................GTTCAAATCCGATTGGA...... 17 1 2 1.50 3 0 0 3 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................GTTCAAATCCGATTGGAAGC... 20 3 12 1.25 15 6 0 0 6 3 0 0 0
...............................................................................................................................................................................................................................................................TGGACAACCTATTTGATAAGACATAACAACT.................................................................. 31 0 1 1.00 1 0 1 0 0 0 0 0 0
..................CAGGGGATCGCAAGAC.............................................................................................................................................................................................................................................................................................................................. 16 1 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................AATGTAGCTCTAAGT...................................................................................................................... 15 0 1 1.00 1 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................ATTTGAATTGCACCTGTACTT...................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................................................................................AGATAAGACATAACAACTAATCTCGTTTAAA..................................................... 31 1 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................TGTTGTAGTTTGATCTAAGTTAAGCA................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0
...................AGGGGATCGCAAGAC.............................................................................................................................................................................................................................................................................................................................. 15 1 2 1.00 2 0 0 0 0 0 2 0 0
......................................................................................................................................................................................................................................................................................................TTAAACAGAGTCACCCGATGA..................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................................................................................................................................................................GTTCAAATCCGATTGGAA..... 18 2 11 0.36 4 2 0 0 1 0 1 0 0
.......................................................................................................GTTGTATTTTGATCTGAGTT..................................................................................................................................................................................................................................... 20 2 6 0.17 1 0 0 0 0 0 0 0 1
.................................................................................................................................................................................................................................................................GACAACCAATTAGTTAAGAC........................................................................... 20 3 12 0.08 1 1 0 0 0 0 0 0 0
..........................................................................................................GTAGTTGGATCTCAGTT..................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................................TTAATAACTGTGGTA................................................................................................... 15 1 20 0.05 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTGGAATGCAGCTCTAAGT...................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

TTACTTTTCTCTAATGATGTCCCCGAGCGTTCTGAGGGAGTGACATTTTCCATTAAATACAAAAACAATAAAATGGGAGTAACGTAACAGAATATAAAGTAGACAACATCAAACTAGATTCAATTCGTACAAATCAATTTGAAATTCAAGTAAAACATAGACCGGTGAAAGGCTATTTACCCAGAATCTTAGATTGATAAACTTAACGTGGACATGAACTTACATCGAGATTCAAAAGAATTATTGATACCATAAACCTGTTGGATAAACTATTCTGTATTGTTGATTAGAGCAAATTTGTCTCAGTGGGCTACTAATAGGGTCATGTTCAAGTTGAGGCTAACCTGCTGCC
******************************************************************.............(((.(((((.(((.((.(((.........))))).))).)))))...)))....*************************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 GSM343915
embryo
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 M023
head
 SRR618934
dsim w501 ovaries
................................................................................................................................................................................................................................................................................................................TTTGGGCTACTAATAGGGTCATG......................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................AGATTGATAAAATTAACTTGGAGA.......................................................................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................TTGTCCTAGTGGGCTACT..................................... 18 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................AGCAAATTTGGCTCA............................................... 15 1 4 0.75 3 3 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................TACGAGTAGGGTCATGTGCAA.................... 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0
................ATGTCCCGGAGCTTTCTCAG............................................................................................................................................................................................................................................................................................................................ 20 3 8 0.50 4 2 2 0 0 0 0 0 0 0 0
........................................................................................................................................ATTTGAAATTAAAGAAAAACATAT................................................................................................................................................................................................ 24 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0
................ATGCCCCCGAGCTTTCTCAG............................................................................................................................................................................................................................................................................................................................ 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0
..............TAATGTCCCCGAGCTTTC................................................................................................................................................................................................................................................................................................................................ 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................CATGTTCAAGTTGATGCT........... 18 1 10 0.20 2 0 0 0 0 2 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................TCGTGTTCAAGTTGAGGC............ 18 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................GTCTCAATCGGCCACTAAT.................................. 19 3 15 0.13 2 0 0 0 0 0 0 0 2 0 0
..................................................................................................................................................................................................................................................................................................AGCAAATTTGTCGCA............................................... 15 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CTAAGCTTGGACATGAACT.................................................................................................................................... 19 3 19 0.11 2 0 0 0 0 2 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................CGTGTTCAAGTTGAGTC............ 17 2 20 0.10 2 0 0 0 0 0 0 2 0 0 0
...................................................................................................................................................................................................................................................................................................................................GATGTGCAAGTTGAGGCTT.......... 19 3 11 0.09 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................TCGTGTTCAAGTTGAGG............. 17 1 11 0.09 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................TCGTGTTCAAGTGGAGGC............ 18 2 12 0.08 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................TCATGTTCAAGTTGATTC............ 18 2 14 0.07 1 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................................................................................................................................TCGTGTTCAAGTTGAG.............. 16 1 14 0.07 1 0 0 0 0 0 1 0 0 0 0
.......TCTCTAATGAAGTGCCTGA...................................................................................................................................................................................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................................................................................................................AATTGGTGTCAGTGGGCTT....................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...................................................................................GTAACAGAATATAATGGCG.......................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................GTGTTCAAGTTGAGTCT........... 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................................................................................................................CATGTTCAAGTTGAT.............. 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:14058803-14059154 - dsi_25015 AATGAAAAGAGATTACTACAGGGGCTCGCAAGACTCCCTCACTGTAAAAGGTAATTT--ATGTT-----TTTG---TTATTTT-ACC--CT-------------CATTGCATTGTCTT--AT----ATTTCA-------------------T-------CTGTT---GT-----------AGTT-T------GATC---------------------TAAG----------TTAAGCATGTT-TAGTTAAACTTTAA----------------------------------GTTCA----TTT---TG--TATCTGGCCACTTT-------CCGATAAATGGG----------------------------------------------------------------------------------------------------------TC-TTAGA-----------ATCTA---------------------------------------------ACT----ATT-TGAAT-----------TGCACCTGTACTT-----GAATGTAGCT---CTAAGTTTT----CT----T----AATAACT----ATGG-TAT------------------TTGGACAACCTATT--TGATAAGACAT---AACAACTAATCTCGTTTAA--ACAGAGTCACCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGACGACGG
droSec2 scaffold_1:10910860-10911211 - AATGAAAAGAGATTACTACAGGGGTTCGCAAGACTCCCTCACTGTAAAAGGTAATTT--ATGTT-----TTTG---TTATTTT-ACC--CT-------------CATTGCATTGTCTT--AT----ATTTCA-------------------T-------CTGTT---GT-----------AGTT-T------GATC---------------------TAAG----------TTAAGCATGTT-TAGTTAAGTTTTAA----------------------------------GTTGA----TTT---TG--TATCTGGCCACTTT-------CCGATAAATGGG----------------------------------------------------------------------------------------------------------TC-TTAGA-----------ATCTA---------------------------------------------ACT----ATT-TGAAT-----------TGCACCTATACTT-----GAATGTAGCT---CTAAGTTTT----CT----T----AATAACT----ATGG-TAT------------------TTGGACAACCTATT--TGATAAGACAT---AACAACTAATCTCGTTTAA--ACAGAGTCACCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGACGACGG
dm3 chr2R:13411027-13411378 - AATGAAAAGAGATTACTACAGGGGCTCCCAAGACTCCCTCACTGTAAAAGGTAATTT--ATGTT-----TTTG---TTATTTT-ACC--CT-------------AATTGCATTGTCTT--AT----ATTTCA-------------------T-------CTGTT---GT-----------AGTT-T------GATC---------------------TAAG----------TTAAGCATGTT-TAGTTAAACTTTAA----------------------------------GTTGA----TTT---TG--TATCTGGCCACTTT-------CCGATAAATGGG----------------------------------------------------------------------------------------------------------TC-TTAGA-----------ATCTA---------------------------------------------ACT----ATT-TGAAT-----------TGCACCTGTACAT-----GAATGTAGCT---CTAAGTTTT----CA----T----TATAACT----ATGG-TAT------------------TTGGACAACCTATT--TGATAAGACAT---AACAACTAATTTCGTTTAA--ACAGAGTCACCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGACGACGG
droEre2 scaffold_4845:7638210-7638564 - AATGAAAAGAGATTACTACAGGGGCTCGCAAGACTCCCTCACTGTAAAAGGTAATTT--ATGTT-----TTTG---TTATTTT-ACC--GT-------------CATTGCATTGTTTT---T----ATTTCA-------------------T-------CTGTT---GT-----------AGTT-T------GATC---------------------TAAG----------TTATGCATGTT-TAGTTAAACCTAAC----------------------------------GTTGA----TTT---GG--TATCTGGTCACTTT-------CCGATAAATGGG----------------------------------------------------------------------------------------------------------AC-TTCAA-----------ATCTA---------------------------------------------ACTATGTATT-TGAAT-----------TGCACCTCTACGT-----AAACGTAGCT---CTAAGTTTT----CT----T----AATAACT----ATGG-AAG------------------TTGGACAACCTATT--TGATAAGCCAT---AACAACTAATCTCGTTTAA--ACAGAGTCGCCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGACGACGG
droYak3 2R:15775909-15776260 + AATGAAAAGAGATTACTACAGGGGCTCGCAAGACTCCCTCACTGTAAAAGGTAATTT--ATGTT-----TTTG---TTATTTT-AAT--GT-------------CATTGCATTGTTTT--AT----ATTTCA-------------------T-------CTTTT---GT-----------AGTT-T------GATC---------------------TAAG----------TTAAGCATGTT-TAGTTACACTTTAA----------------------------------GTTGA----TTT---GG--TATCTGGTCACTTT-------CCGATAAATGGG----------------------------------------------------------------------------------------------------------TC-TTAGA-----------ATCTA---------------------------------------------ACT----ACT-TGAAT-----------TGCACCTCTATCT-----AAATGTAGCT---CTAAGTTTT----CT--------AATTAACT----ATGG-TAT------------------TTTGAAAACCTATT--TGATAAGCCAT---AACAACTAATCTCGTTTAA--ACAGAGTCACCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGACGACGG
droEug1 scf7180000409672:1700375-1700730 + AATGAAAAGAGATTACTACAGGGGCTCGCAAGACTCCCTCACTGTAAAAGGTAATTT--ATGTT-----TTTC---TTTATTT-ATC--CT-------------CATTGCATTGTCTT--AT----ATTTCA-------------------T-------CTTTC---GT-----------AGTT-T------TATC---------------------TAAG----------TTAAGCATGAT-TAGTTACACATTAA----------------------------------GTTAT----TTT---GT--TTTCTGATACTTTT-------CTGGTAAATGGG----------------------------------------------------------------------------------------------------------AC-CTAAA-----------ATCTA---------------------------------------------ACG----AGT-TAAAT-----------TGCACCTCGACGT-----AATTGTAGAT---CTAAGTTTT----CT----TAAAAAATAACT----ATGG-ATT------------------TTTGTCAATCTAAT--TAGTAAGCCTT---AACAACTAATCTCGTTCAA--ACAGAGTCACCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGACGACGG
droBia1 scf7180000301754:5659106-5659464 - AATGAAAAGAGATTACTACAGGGGCTCGCAAGACTCCCTCACTGTAAAAGGTAATTT--ATGTT-----TTTC---TTATTTT-ACG--TT-------------CATTGCATTGTCCT--AT----ATTTCA-------------------T-------CCCTT---GT-----------AGTT-T------TACC---------------------TAAG----------TTAAGCATGCC-TAGTTACACTTTAA----------------------------------GTTGA----TT----GA--TTTGTGGTATTTTT-------CCGGTAGAAGGG----------------------------------------------------------------------------------------------------------TC-CTATG-----------ATCTA---------------------------------------------ACG----ATT-CGAAT-----------CGCACCTCGACTT-----GATTGTAGTT---CTAAGTTTA----CTATACTTAAAAATAACT----TTGG-TAT------------------TTGGACAACCTATT--TGATAAGCCAT---AACAACTAATCTCGTTCAC--ACAGAGTCACCGGATGATTATCCCAGTACAAGTTCAACTCCGATTGGACGACGG
droTak1 scf7180000415138:330271-330642 + AATGAAAAGAGATTACTACAGGGGCTCGCAAGACTCCCTCACTGTAAAAGGTAATTT--ATGTT-----TTTTGTTTTACTGT-ACC--CT-------------CATTGCATTGTCTT--ATATAAATTTCA-------------------T-------CTTTT---GT-----------AGTT-C------TATC---------------------TAAGTTATTACG--TTAAGCATGCT-TAGTTACCTTTTAA----------------------------------GTTGA----TTG----GTTTCTCTGGTACTTTT-------TCGGTAGTTGGG----------------------------------------------------------------------------------------------------------AC-TTATA-----------ATCTA---------------------------------------------ACG----ATT-TGAGC-----------TGCACCTCGACTT-----AATTGTAGTT---CTAAGTTCT----CT----TTAAAAATAACT----TTGG-TAT------------------TTGGACAACCTATT--TGATAAGCCAT---AACCACTAATCTCGTTCCA--ACAGAGTCACCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGACGACGG
droEle1 scf7180000491214:877038-877394 + AATGAAAAGAGATTACTACAGGGGCTCGCAAGACTCCCTCACTGTAAAAGGTAATTT--ATGTT-----TTTG---TTATTCT-ACCCTCT-------------CATTGCATTGTCTT--AT----ATTTCA-------------------T-------ATTTTTTAGT-----------AGTT-T------TACT---------------------TAAG----------TTAAGCATGTT-TAGTTATACGTTAA----------------------------------GTTGA----TTTCTATA--TTTGTGGTACATTT-------CCGGTAGATGGG----------------------------------------------------------------------------------------------------------AC-TTACA-----------ATCTA---------------------------------------------ACG----TTT-TGAAT-----------TGCACCTCGACTTACTATAATTGTAGTT---ATAAGTT--------------------GACT----ATGG-ATT------------------TTGGACAACCTATT--TGATAAGCCAT---AACAACTAATCTCGTTCAA--ACAGAGTCACCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGACGACGG
droRho1 scf7180000778035:135138-135488 + AATGAAAAGAGATTACTACAGGGGCTCGCAAGACTCCCTCACTGTAAAAGGTAATTT--ATGTT-----TTTG---TTATTTT-ACC--CT-------------CATTGCATTGTCGT--AT----ATTTCA-------------------T-------CTTTT---GT-----------AGTT-T------TATC---------------------TAAG----------TTAAGCATGTT-TAGTTACACGTTAA----------------------------------GTTGA----TTT---CT--TTTCTGGTAAATTT-------CCGGTAGATGGG----------------------------------------------------------------------------------------------------------AC-TTACA-----------ATCTA---------------------------------------------ACG----ATT-TGAAT-----------TGCACCTCGACTT-----AATTGTACTC---ATAAGTTTT----CT----TAAA---AAAC------TGG-ATT------------------TTGGAAAACCTATT--TGATAAGCCAT---AACAACTAATCTCGTTTAA--ACAGAGTCACCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGACGACGG
droFic1 scf7180000453948:2042997-2043333 + AATGAAAAGAGATTACTACAGGGGCTCGCAAGACTCCCTCACTGTAAAAGGTAATTT--ATGTT-----TTTG---TTATTTT-AAC--CC-------------CTTTGCATTGTCCT--AT----ATTTCA-------------------T-------CCTTT----T-----------AGTT-T------TACC---------------------TAAG----------CTAAGCATGTT-TAGTTGTACGTTAA----------------------------------TTTGA----TTT----------------ATTTT-------ACGGTAGATGGG----------------------------------------------------------------------------------------------------------AC-TTATA-----------GTCTA---------------------------------------------ACA----ATT-TTAAT-----------TGCACT------T-----TATTGTAGCT---CTAAGTTTT----CC----TT-AAAATAACT----TTGG-AAT------------------CTGGACAACCTATT--TGATAAGCTTT---AACCACTAATCTCGTTCAA--ACAGAGTCACCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGACGACGG
droKik1 scf7180000302385:830271-830626 + AATGAAACGAGATTACTACAGGGGCTCGCAAGACTCCCTCACTGTAAAAGGTAATTT--TTGGC-----TTT-----TATTTT-ACC--CTCA----T------TAATGCATTGTCTTT-ATATATATTTCA-------------------T-------CTGTA---GTAAGTCGTTTTTAGTTAT------TATC---------------------CAAGTT--AAGT--TTAAGCATGTT-TAGTTATCGCCTAA----------------------------------GTTGA----TTC---GG--TTTTTGGT---------------------------------------------------------------------------------------------------------------------------------------------------------TA---------------------------------------------ACT----ATT-TGAAC-----------TGCACTTGGACTA-----AATTGTAGGCTGTGTAAGCTCTTTTTCT----CT-ATAATAACT-AA-ATGGATAT------------------ATGGA-----TATT--TGATAAGATGT---AACCACTAATCTCGTTTAC--ACAGAGTCACCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGACGACGG
droAna3 scaffold_13266:8895985-8896319 - AATGAAACGAGACTACTACAGGGGCTCGCAAGACTCCCTTACCGTGAAAGGTAATTT--TTTATTTGTTTTTTAA-TTACTTATACC-TCT-------------CATTGCATCGTCTT--GT----GTTTTA-------------------T-------CCTTA---GT-----------AGTT-T------T------------------------TAAG--ATTA-G--TTAGGCATGCGTTTATTT------------------------------------------TTTGT----TTTA-----------------TATCCCTAACAAGGTAGAAGTTTCTCCC-----------------------------------------------------------------------------------------------------------------------TTTTA---------------------------------------------ATT----AT---TATT-----------TGCACTTGATCTT-----AATCCTAATT---CTAAGTTAG----CT---------AATA-----------------------------------AGAAAACCTATT--TAATAAGCCCT---AACTACTAATCTTGTTCAC--ACAGAGTCACCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGACGACGG
droBip1 scf7180000396427:43044-43380 - AATGAAACGAGACTACTACAGGGGCTCGCAAGACTCCCTTACCGTAAAAGGTAATTT--TTATTTTGTTTTTAGT-ATATTTT-A-T--AT-------------CATTGCATCGTCTT--AT----GTTTCA-------------------T-------CTTTT---GT-----------AGTT-T------TTAT---------------------TAAG--ATTA-T--TTAGGCATGTTCTTATTT------------------------------------------TATTA----TTTA-----------------TTT--CTAATAAGGTAGAAGGTT-------------------------------------------------------------------------------------------------------------TAT-------------TATT---------------------------------------------ATT----A---TTATT-----------TGCACTTGAACTA-----AATCCTAATA---CTAAGTA----------------------TT----AAAG-TATT-------C---------TTGAGAAACCTACC--TAATAAGTCCT---AACAACTAATCTTGTTCACACACAGAGTCACCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGACGACGG
dp5 3:4862127-4862467 - AATGAAAAGAGATTATTACAGGGGCTCGCAAGACTCCCTCACAGTGAAAGGTAATTTTTATGTT-----CCTA---GTA-----ACC--TTCT----T------TATCGCATTGTATCCTAT-CATTTTTCA-------------------TTGTGTATCC--------------------------------------------------------CTAGTT--TAAA--GTAAGCATGTA-TTATTA------------------------------------------TCAGA----TTTA-----------------TAT--TTA--ATGGTAGAAGGGCGTTCCATTCTGTTTTCTTTTT-TTTT-------------------------------------------------------------------------------------TG-----------GTTTA---------------------------------------------ATG----ATT-TGATA-----------TGCACGCAATCAA-----AACTA------------------------------TAATTAACT----ATGA-TAT------------------ATA-------T-AT--TGATAAGGTATAATAACCACTAATCTCGTTCAA--ACAGAGTCACCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGGCGACGG
droPer2 scaffold_2:5054610-5054950 - AATGAAAAGAGATTATTACAGGGGCTCGCAAGACTCCCTCACAGTGAAAGGTAATTTTTATGTT-----ACTG---------TAACC--TTCT----T------TATCGCATTGTATCCTAT-CATTTTTCA-------------------TTGTGTATCC--------------------------------------------------------CTAGTT--TAAA--GTAAGCATGTA-TTATTA------------------------------------------TTAGA----TTTA-----------------TAT--TTA--ATGGTAGAAGGGCGTTCCATTCTGTTTTCTTTTTTTTTT-------------------------------------------------------------------------------------TG-----------GTTTA---------------------------------------------ATG----ATT-TGATA-----------TGCACGCAATCAA-----AAC--TA----------------------------GAATTAACT----ATGA-TAT------------------AT-----AT---CT--TGATAAGGTATAATAACCACTAATCTCGTTCAA--ACAGAGTCACCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGGCGACGG
droWil2 scf2_1100000004954:4451413-4451817 + AATGAAAAGAGATTATTATAGGGGCTCGCAAGATTCCCTTACAGTCAAAGGTAATTT--TTTAT-TGTTTTTTGT-CTA------CAAGTT---------CATTCATTGT-----T-T--AT----A--TCA-------------------T-------TTTTGTTATT----CTTT-----TTAT------CAATTA----------------AGTTATG----------TTAAGCATGCA-TTTTTT----------GATTTTACCTATTT---------------GGCGTTGTTTTTTTG----GTTTC-----------T--CTATTAGAATAACAAACC------------------------------------------------------------------------------------------------------------TTTT------CTTTTGACTCCGTTTATTCGTTAGTCTCTCTTTATATTATCTTTTTGTTTAACCTAGTTGTAAATC-TGAAA-----------TTCCCTACTTTGT-----TAATATAGTT---GTAAGTGTC----CT---------------------------------------ATGTGGCG-TAT-------------ATAT-TCTTTACTATTACTAATCTCGTTTAA--ACAGAATCTCCCGATGATTACCCCAGTACAAGTTCAACTCCGATTGGACGAAGG
droVir3 scaffold_12875:12742430-12742812 + dvi_6537 AATGAAAAGAGACTTTTATAGGGGCTCGCAAGACTCCCTTACAGTTAAAGGTAATTT--ATGTT-----TATT---TCTCTTG-TTT--TTCTTTAAACGATTTCATTGT-----T-T--AT----G--TCT-----------------------------TTT------------------------------ATTT----------------GGTTATG--------ATAAGAGCATGCTCT---------------------------------------------------------------------------ACTT-TAA------------------------------------------TTGCTTTTATGATTTGATATAGTGTTTGCTTTT--------------------TATTATTTATTTTAGTTTAGTTTAGGGGCATTGTG---TGGGTATGATTTG---------------------------------------------ATA----T--AT-CATTTTGATTTCCAAGCACTTCAGCTA-------ATGTAGTTT--ATTA------------TAA--CA----CAATCAT-TTGG-G--------------------TC-AAGAATATAATTATGTTAAGCCAT---AACTACTAATCTCGTTCA---ACAGAGTCCCCCGATGATTATCCCAGCACAAGTTCAACTCCGATTGGACGACGG
droMoj3 scaffold_6496:20023350-20023752 + AATGAAAAGAGATTTTTATAGGGGCTCCCAAGACTCGCTTACAGTAAAAGGTAATTT--ATGTT-----TTTG---TTGCTT--------TCT-TATTTAATGTCATTGT-----T-T--AT----A--TCATTTGGTATATTTTTTTTTAT-------TTTTT---GT-----------AGTT-A------TAT-------------------------------------TTAGCATGCGATTTTTG------------------------------------------TTT----------------------GCGACTT-TGATATTTACGTAGAAGCTT---------------------------------------------------TGCTTGGTTTTGATATTTATTTAATTGAATTATTTATTTTACT--GGTTTAGGAAC-TTATG-----------ATTTG---------------------------------------------ACG----A-----AATTGTCATTTCTAAGCACTTGAACT-------AATGTAGTT---CGTA------------TAA--CA----AACTGATTTTGG-G--------------------TCGAAGAATTTTAT--TGTTAAGACAT---AATTACTAATCTCGTTCA---ACAGAATCACCCGATGATTACCCCAGCACAAGTTCAACTCCGATTGGACGACGG
droGri2 scaffold_15245:7610777-7611139 - AATGAAAAGAGATTTTTATAGGGGCTCGCAAGACTCCCTCACTGTTAAAGGTAATTT--CTGTT-----TGAA---TT------GTT--CT-------------CATTGT-----------------TTTCA-------------------T-------CTTTT---GA----------------TTACCATTTATTAATATCATTTTGTTAATGGTTTTG--------TTTTAAGCATGCG-----------TTAACTGGTATTATTAGTAATTATTATTATAATTA---T-------------------------CACGTTT-------TTGGTTTGGGGG-----------------------------------------------------------------------------------------------------------CATTATGGTTTGGATATGATTTAGTTA-----------------------------------------ATT------------------------------------------AATTA------------------------------TATTTAACT----AATA-CAGTAGTGATTGCAATGAAGAA-GAAGAATTGTATTACATTAAGTCAT---AACTACTAATCTCGTTCA---ACAGAGTCACCCGACGACTATCCCAGCACAAGTTCAACTCCGATTGGACGACGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AATGAAAAGAGATTACTACAGGGGCTCGCAAGACTCCCTCACTGTAAAAGGTAATTT--ATGTT-----TTTG---TTATTTT-ACC--CT-------------CATTGCATTGTCTT--AT----ATTTCA-------------------T-------CTGTT---GT-----------AGTT-T------GATC---------------------TAAG----------TTAAGCATGTT-TAGTTAAACTTTAA----------------------------------GTTCA----TTT---TG--TATCTGGCCACTTT-------CCGATAAATGGG----------------------------------------------------------------------------------------------------------TC-TTAGA-----------ATCTA---------------------------------------------ACT----ATT-TGAAT-----------TGCACCTGTACTT-----GAATGTAGCT---CTAAGTTTT----CT----T----AATAACT----ATGG-TAT------------------TTGGACAACCTATT--TGATAAGACAT---AACAACTAATCTCGTTTAA--ACAGAGTCACCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGACGACGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACAACCTATT--TGATAAGACAT---AACAACT....................................................................3111.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTAGCT---CTAAGT................................................................................................................................................................1511.00100000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT-TGAAT-----------TGCACCTGTACTT-----...................................................................................................................................................................................2111.00100010000000000000
................................................................................................................................................................TGTT---GT-----------AGTT-T------GATC---------------------TAAG----------TTAAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAA--ACAGAGTCACCCGATGA.....................................2111.00100001000000000000
droSec2
AATGAAAAGAGATTACTACAGGGGTTCGCAAGACTCCCTCACTGTAAAAGGTAATTT--ATGTT-----TTTG---TTATTTT-ACC--CT-------------CATTGCATTGTCTT--AT----ATTTCA-------------------T-------CTGTT---GT-----------AGTT-T------GATC---------------------TAAG----------TTAAGCATGTT-TAGTTAAGTTTTAA----------------------------------GTTGA----TTT---TG--TATCTGGCCACTTT-------CCGATAAATGGG----------------------------------------------------------------------------------------------------------TC-TTAGA-----------ATCTA---------------------------------------------ACT----ATT-TGAAT-----------TGCACCTATACTT-----GAATGTAGCT---CTAAGTTTT----CT----T----AATAACT----ATGG-TAT------------------TTGGACAACCTATT--TGATAAGACAT---AACAACTAATCTCGTTTAA--ACAGAGTCACCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGACGACGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............CTACAGGGGTTCGCAAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAACTCCGATTGGAA.....1811.0011000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAATCTCGTTTAA--ACAG..................................................1911.0010001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-TGAAT-----------TGCACCTATACTT-----G..................................................................................................................................................................................2111.0010001
dm3
AATGAAAAGAGATTACTACAGGGGCTCCCAAGACTCCCTCACTGTAAAAGGTAATTT--ATGTT-----TTTG---TTATTTT-ACC--CT-------------AATTGCATTGTCTT--AT----ATTTCA-------------------T-------CTGTT---GT-----------AGTT-T------GATC---------------------TAAG----------TTAAGCATGTT-TAGTTAAACTTTAA----------------------------------GTTGA----TTT---TG--TATCTGGCCACTTT-------CCGATAAATGGG----------------------------------------------------------------------------------------------------------TC-TTAGA-----------ATCTA---------------------------------------------ACT----ATT-TGAAT-----------TGCACCTGTACAT-----GAATGTAGCT---CTAAGTTTT----CA----T----TATAACT----ATGG-TAT------------------TTGGACAACCTATT--TGATAAGACAT---AACAACTAATTTCGTTTAA--ACAGAGTCACCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGACGACGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TGAAT-----------TGCACCTGTACAT-----GAATGTAGC..........................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.....................................................................................................................T--AT----ATTTCA-------------------T-------CTGTT---GT-----------AGTT-T------GATC---------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA---------------------------------------------ACT----ATT-TGAAT-----------TGCACCTG.............................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................TGTT---GT-----------AGTT-T------GATC---------------------TAAG----------TT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATGATTATCCCAGTACAAGTTCAAC................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----ATGG-TAT------------------TTGGACAACCTAT............................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAACTCCGATTGGAA.....1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTTT----CA----T----TATAACT----ATGG-..............................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................TT-T------GATC---------------------TAAG----------TTAAGCATGTT-TAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
AATGAAAAGAGATTACTACAGGGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAACT----ATGG-TAT------------------TTGGACA..................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....AAAAGAGATTACTACAGGGGCTCCCAAGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TAAATGGG----------------------------------------------------------------------------------------------------------TC-TTAGA-----------ATCTA---------------------------------------------ACT----ATT-.....................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-TGAAT-----------TGCACCTGTACAT-----GAATG..............................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACAACCTATT--TGATAAGACAT---AACA.......................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TTT---TG--TATCTGGCCACTTT-------CCGATAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAACTCCGATTGGAC.....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCCGATTGGACGACGG1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TACTACAGGGGCTCCCAAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................T-------CCGATAAATGGG----------------------------------------------------------------------------------------------------------TC-TTAGA-----------ATCTA---------------------------------------------AC..............................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAAGACAT---AACAACTAATTTCG.............................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------------------------ACT----ATT-TGAAT-----------TGCACCTGTACAT-----GAATT..............................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TT-------CCGATAAATGGG----------------------------------------------------------------------------------------------------------TC-TTAGA-----------ATC...............................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....AAAAGAGATTACTACAGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCCGATGATTATCCCAGT...........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................TCA-------------------T-------CTGTT---GT-----------AGTT-T------GATC---------------------TAAG----------T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----GAATGTAGCT---CTAAGTTTT----CA----T----TATAAC........................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ACTACAGGGGCTCCCAAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................ACTCCCTCACTGTAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--TGATAAGACAT---AACAACTAATC................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATT--TGATAAGACAT---AACAACTAATTTCGT............................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TTT---TG--TATCTGGCCACT....................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAT-----------TGCACCTGTACAT-----GAATGTAGC..........................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTATCCCAGTACAAGTTCAA.................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................TCA-------------------T-------CTGTT---GT-----------AGTT-T------GAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................T--ATGTT-----TTTG---TTATTTT-ACC--.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
............................CAAGACTCCCTCACTGTAAAAGGTAATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........ATTACTACAGGGGCTCCCAAGACTCCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCCGATGATTATCCCAGTACAAGT.....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TCCCAAGACTCCCTCACTGTAAAAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................TTTAA----------------------------------GTTGA----TTT---TG--TATCTGGCCACT....................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCAACTCCGATTGGAA.....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTA---------------------------------------------ACT----ATT-TGAAT-----------TGCACCT..............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTA---------------------------------------------ACT----ATT-TGAAT-----------TGCACCTGTACA.........................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTTAA--ACAGAGTCACCCGAT.......................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACAT-----GAATGTAGCT---CTAAGTTTT----.........................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTATT--TGATAAGACAT---...........................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAGTTCAACTCCGATTGGACGACGG2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAGCT---CTAAGTTTT----G........................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AATGAAAAGAGATTACTACAGGGGCTCGCAAGACTCCCTCACTGTAAAAGGTAATTT--ATGTT-----TTTG---TTATTTT-ACC--GT-------------CATTGCATTGTTTT---T----ATTTCA-------------------T-------CTGTT---GT-----------AGTT-T------GATC---------------------TAAG----------TTATGCATGTT-TAGTTAAACCTAAC----------------------------------GTTGA----TTT---GG--TATCTGGTCACTTT-------CCGATAAATGGG----------------------------------------------------------------------------------------------------------AC-TTCAA-----------ATCTA---------------------------------------------ACTATGTATT-TGAAT-----------TGCACCTCTACGT-----AAACGTAGCT---CTAAGTTTT----CT----T----AATAACT----ATGG-AAG------------------TTGGACAACCTATT--TGATAAGCCAT---AACAACTAATCTCGTTTAA--ACAGAGTCGCCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGACGACGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT----T----AATAACT----ATGG-AAG------------------TTGGA....................................................................................................2211.0010000100
............TTACTACAGGGGCTCGCAAGACTCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAACCTATT--TGATAAGCCAT---AACAAC.....................................................................2911.0011000000
droYak3
AATGAAAAGAGATTACTACAGGGGCTCGCAAGACTCCCTCACTGTAAAAGGTAATTT--ATGTT-----TTTG---TTATTTT-AAT--GT-------------CATTGCATTGTTTT--AT----ATTTCA-------------------T-------CTTTT---GT-----------AGTT-T------GATC---------------------TAAG----------TTAAGCATGTT-TAGTTACACTTTAA----------------------------------GTTGA----TTT---GG--TATCTGGTCACTTT-------CCGATAAATGGG----------------------------------------------------------------------------------------------------------TC-TTAGA-----------ATCTA---------------------------------------------ACT----ACT-TGAAT-----------TGCACCTCTATCT-----AAATGTAGCT---CTAAGTTTT----CT--------AATTAACT----ATGG-TAT------------------TTTGAAAACCTATT--TGATAAGCCAT---AACAACTAATCTCGTTTAA--ACAGAGTCACCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGACGACGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............ACTACAGGGGCTCGCAAGACTCCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
droEug1
AATGAAAAGAGATTACTACAGGGGCTCGCAAGACTCCCTCACTGTAAAAGGTAATTT--ATGTT-----TTTC---TTTATTT-ATC--CT-------------CATTGCATTGTCTT--AT----ATTTCA-------------------T-------CTTTC---GT-----------AGTT-T------TATC---------------------TAAG----------TTAAGCATGAT-TAGTTACACATTAA----------------------------------GTTAT----TTT---GT--TTTCTGATACTTTT-------CTGGTAAATGGG----------------------------------------------------------------------------------------------------------AC-CTAAA-----------ATCTA---------------------------------------------ACG----AGT-TAAAT-----------TGCACCTCGACGT-----AATTGTAGAT---CTAAGTTTT----CT----TAAAAAATAACT----ATGG-ATT------------------TTTGTCAATCTAAT--TAGTAAGCCTT---AACAACTAATCTCGTTCAA--ACAGAGTCACCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGACGACGGSizeHit CountTotal NormTotal
No Reads
droBia1
AATGAAAAGAGATTACTACAGGGGCTCGCAAGACTCCCTCACTGTAAAAGGTAATTT--ATGTT-----TTTC---TTATTTT-ACG--TT-------------CATTGCATTGTCCT--AT----ATTTCA-------------------T-------CCCTT---GT-----------AGTT-T------TACC---------------------TAAG----------TTAAGCATGCC-TAGTTACACTTTAA----------------------------------GTTGA----TT----GA--TTTGTGGTATTTTT-------CCGGTAGAAGGG----------------------------------------------------------------------------------------------------------TC-CTATG-----------ATCTA---------------------------------------------ACG----ATT-CGAAT-----------CGCACCTCGACTT-----GATTGTAGTT---CTAAGTTTA----CTATACTTAAAAATAACT----TTGG-TAT------------------TTGGACAACCTATT--TGATAAGCCAT---AACAACTAATCTCGTTCAC--ACAGAGTCACCGGATGATTATCCCAGTACAAGTTCAACTCCGATTGGACGACGGSizeHit CountTotal NormTotal
No Reads
droTak1
AATGAAAAGAGATTACTACAGGGGCTCGCAAGACTCCCTCACTGTAAAAGGTAATTT--ATGTT-----TTTTGTTTTACTGT-ACC--CT-------------CATTGCATTGTCTT--ATATAAATTTCA-------------------T-------CTTTT---GT-----------AGTT-C------TATC---------------------TAAGTTATTACG--TTAAGCATGCT-TAGTTACCTTTTAA----------------------------------GTTGA----TTG----GTTTCTCTGGTACTTTT-------TCGGTAGTTGGG----------------------------------------------------------------------------------------------------------AC-TTATA-----------ATCTA---------------------------------------------ACG----ATT-TGAGC-----------TGCACCTCGACTT-----AATTGTAGTT---CTAAGTTCT----CT----TTAAAAATAACT----TTGG-TAT------------------TTGGACAACCTATT--TGATAAGCCAT---AACCACTAATCTCGTTCCA--ACAGAGTCACCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGACGACGGSizeHit CountTotal NormTotal
No Reads
droEle1
AATGAAAAGAGATTACTACAGGGGCTCGCAAGACTCCCTCACTGTAAAAGGTAATTT--ATGTT-----TTTG---TTATTCT-ACCCTCT-------------CATTGCATTGTCTT--AT----ATTTCA-------------------T-------ATTTTTTAGT-----------AGTT-T------TACT---------------------TAAG----------TTAAGCATGTT-TAGTTATACGTTAA----------------------------------GTTGA----TTTCTATA--TTTGTGGTACATTT-------CCGGTAGATGGG----------------------------------------------------------------------------------------------------------AC-TTACA-----------ATCTA---------------------------------------------ACG----TTT-TGAAT-----------TGCACCTCGACTTACTATAATTGTAGTT---ATAAGTT--------------------GACT----ATGG-ATT------------------TTGGACAACCTATT--TGATAAGCCAT---AACAACTAATCTCGTTCAA--ACAGAGTCACCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGACGACGGSizeHit CountTotal NormTotal
No Reads
droRho1
AATGAAAAGAGATTACTACAGGGGCTCGCAAGACTCCCTCACTGTAAAAGGTAATTT--ATGTT-----TTTG---TTATTTT-ACC--CT-------------CATTGCATTGTCGT--AT----ATTTCA-------------------T-------CTTTT---GT-----------AGTT-T------TATC---------------------TAAG----------TTAAGCATGTT-TAGTTACACGTTAA----------------------------------GTTGA----TTT---CT--TTTCTGGTAAATTT-------CCGGTAGATGGG----------------------------------------------------------------------------------------------------------AC-TTACA-----------ATCTA---------------------------------------------ACG----ATT-TGAAT-----------TGCACCTCGACTT-----AATTGTACTC---ATAAGTTTT----CT----TAAA---AAAC------TGG-ATT------------------TTGGAAAACCTATT--TGATAAGCCAT---AACAACTAATCTCGTTTAA--ACAGAGTCACCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGACGACGGSizeHit CountTotal NormTotal
No Reads
droFic1
AATGAAAAGAGATTACTACAGGGGCTCGCAAGACTCCCTCACTGTAAAAGGTAATTT--ATGTT-----TTTG---TTATTTT-AAC--CC-------------CTTTGCATTGTCCT--AT----ATTTCA-------------------T-------CCTTT----T-----------AGTT-T------TACC---------------------TAAG----------CTAAGCATGTT-TAGTTGTACGTTAA----------------------------------TTTGA----TTT----------------ATTTT-------ACGGTAGATGGG----------------------------------------------------------------------------------------------------------AC-TTATA-----------GTCTA---------------------------------------------ACA----ATT-TTAAT-----------TGCACT------T-----TATTGTAGCT---CTAAGTTTT----CC----TT-AAAATAACT----TTGG-AAT------------------CTGGACAACCTATT--TGATAAGCTTT---AACCACTAATCTCGTTCAA--ACAGAGTCACCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGACGACGGSizeHit CountTotal NormTotal
No Reads
droKik1
AATGAAACGAGATTACTACAGGGGCTCGCAAGACTCCCTCACTGTAAAAGGTAATTT--TTGGC-----TTT-----TATTTT-ACC--CTCA----T------TAATGCATTGTCTTT-ATATATATTTCA-------------------T-------CTGTA---GTAAGTCGTTTTTAGTTAT------TATC---------------------CAAGTT--AAGT--TTAAGCATGTT-TAGTTATCGCCTAA----------------------------------GTTGA----TTC---GG--TTTTTGGT---------------------------------------------------------------------------------------------------------------------------------------------------------TA---------------------------------------------ACT----ATT-TGAAC-----------TGCACTTGGACTA-----AATTGTAGGCTGTGTAAGCTCTTTTTCT----CT-ATAATAACT-AA-ATGGATAT------------------ATGGA-----TATT--TGATAAGATGT---AACCACTAATCTCGTTTAC--ACAGAGTCACCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGACGACGGSizeHit CountTotal NormTotal
No Reads
droAna3
AATGAAACGAGACTACTACAGGGGCTCGCAAGACTCCCTTACCGTGAAAGGTAATTT--TTTATTTGTTTTTTAA-TTACTTATACC-TCT-------------CATTGCATCGTCTT--GT----GTTTTA-------------------T-------CCTTA---GT-----------AGTT-T------T------------------------TAAG--ATTA-G--TTAGGCATGCGTTTATTT------------------------------------------TTTGT----TTTA-----------------TATCCCTAACAAGGTAGAAGTTTCTCCC-----------------------------------------------------------------------------------------------------------------------TTTTA---------------------------------------------ATT----AT---TATT-----------TGCACTTGATCTT-----AATCCTAATT---CTAAGTTAG----CT---------AATA-----------------------------------AGAAAACCTATT--TAATAAGCCCT---AACTACTAATCTTGTTCAC--ACAGAGTCACCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGACGACGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCCGATGATTATCCCAGTACAAGTTC...................2811.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT--TAATAAGCCCT---AACTACC....................................................................2111.001010000
droBip1
AATGAAACGAGACTACTACAGGGGCTCGCAAGACTCCCTTACCGTAAAAGGTAATTT--TTATTTTGTTTTTAGT-ATATTTT-A-T--AT-------------CATTGCATCGTCTT--AT----GTTTCA-------------------T-------CTTTT---GT-----------AGTT-T------TTAT---------------------TAAG--ATTA-T--TTAGGCATGTTCTTATTT------------------------------------------TATTA----TTTA-----------------TTT--CTAATAAGGTAGAAGGTT-------------------------------------------------------------------------------------------------------------TAT-------------TATT---------------------------------------------ATT----A---TTATT-----------TGCACTTGAACTA-----AATCCTAATA---CTAAGTA----------------------TT----AAAG-TATT-------C---------TTGAGAAACCTACC--TAATAAGTCCT---AACAACTAATCTTGTTCACACACAGAGTCACCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGACGACGGSizeHit CountTotal NormTotal
No Reads
dp5
AATGAAAAGAGATTATTACAGGGGCTCGCAAGACTCCCTCACAGTGAAAGGTAATTTTTATGTT-----CCTA---GTA-----ACC--TTCT----T------TATCGCATTGTATCCTAT-CATTTTTCA-------------------TTGTGTATCC--------------------------------------------------------CTAGTT--TAAA--GTAAGCATGTA-TTATTA------------------------------------------TCAGA----TTTA-----------------TAT--TTA--ATGGTAGAAGGGCGTTCCATTCTGTTTTCTTTTT-TTTT-------------------------------------------------------------------------------------TG-----------GTTTA---------------------------------------------ATG----ATT-TGATA-----------TGCACGCAATCAA-----AACTA------------------------------TAATTAACT----ATGA-TAT------------------ATA-------T-AT--TGATAAGGTATAATAACCACTAATCTCGTTCAA--ACAGAGTCACCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGGCGACGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............TTACAGGGGCTCGCAAGACTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
droPer2
AATGAAAAGAGATTATTACAGGGGCTCGCAAGACTCCCTCACAGTGAAAGGTAATTTTTATGTT-----ACTG---------TAACC--TTCT----T------TATCGCATTGTATCCTAT-CATTTTTCA-------------------TTGTGTATCC--------------------------------------------------------CTAGTT--TAAA--GTAAGCATGTA-TTATTA------------------------------------------TTAGA----TTTA-----------------TAT--TTA--ATGGTAGAAGGGCGTTCCATTCTGTTTTCTTTTTTTTTT-------------------------------------------------------------------------------------TG-----------GTTTA---------------------------------------------ATG----ATT-TGATA-----------TGCACGCAATCAA-----AAC--TA----------------------------GAATTAACT----ATGA-TAT------------------AT-----AT---CT--TGATAAGGTATAATAACCACTAATCTCGTTCAA--ACAGAGTCACCCGATGATTATCCCAGTACAAGTTCAACTCCGATTGGGCGACGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............TATTACAGGGGCTCGCAAGACTCCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
droWil2
AATGAAAAGAGATTATTATAGGGGCTCGCAAGATTCCCTTACAGTCAAAGGTAATTT--TTTAT-TGTTTTTTGT-CTA------CAAGTT---------CATTCATTGT-----T-T--AT----A--TCA-------------------T-------TTTTGTTATT----CTTT-----TTAT------CAATTA----------------AGTTATG----------TTAAGCATGCA-TTTTTT----------GATTTTACCTATTT---------------GGCGTTGTTTTTTTG----GTTTC-----------T--CTATTAGAATAACAAACC------------------------------------------------------------------------------------------------------------TTTT------CTTTTGACTCCGTTTATTCGTTAGTCTCTCTTTATATTATCTTTTTGTTTAACCTAGTTGTAAATC-TGAAA-----------TTCCCTACTTTGT-----TAATATAGTT---GTAAGTGTC----CT---------------------------------------ATGTGGCG-TAT-------------ATAT-TCTTTACTATTACTAATCTCGTTTAA--ACAGAATCTCCCGATGATTACCCCAGTACAAGTTCAACTCCGATTGGACGAAGGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........GATTATTATAGGGGCTCGCAAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
.......AGAGATTATTATAGGGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000
droVir3
AATGAAAAGAGACTTTTATAGGGGCTCGCAAGACTCCCTTACAGTTAAAGGTAATTT--ATGTT-----TATT---TCTCTTG-TTT--TTCTTTAAACGATTTCATTGT-----T-T--AT----G--TCT-----------------------------TTT------------------------------ATTT----------------GGTTATG--------ATAAGAGCATGCTCT---------------------------------------------------------------------------ACTT-TAA------------------------------------------TTGCTTTTATGATTTGATATAGTGTTTGCTTTT--------------------TATTATTTATTTTAGTTTAGTTTAGGGGCATTGTG---TGGGTATGATTTG---------------------------------------------ATA----T--AT-CATTTTGATTTCCAAGCACTTCAGCTA-------ATGTAGTTT--ATTA------------TAA--CA----CAATCAT-TTGG-G--------------------TC-AAGAATATAATTATGTTAAGCCAT---AACTACTAATCTCGTTCA---ACAGAGTCCCCCGATGATTATCCCAGCACAAGTTCAACTCCGATTGGACGACGGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.ATGAAAAGAGACTTTTATAGGGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000010000000
......................................................................................................................................................................................................................................TAAGAGCATGCTCT---------------------------------------------------------------------------ACTT-TAA------------------------------------------.....................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000100000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCCAT---AACTACTAATCTCGTTC..........................................................2511.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA--CA----CAATCAT-TTGG-G--------------------TC-AAGAATAT..............................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGGGGCATTGTG---TGG.......................................................................................................................................................................................................................................................................................1811.001000000000000000000000000100000000000000000000000000000000000000
...................................................................................................................................T-----------------------------TTT------------------------------ATTT----------------GGTTATG--------ATAAGAGCATGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................TTT------------------------------ATTT----------------GGTTATG--------ATAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---ACAGAGTCCCCCGATG......................................1811.001000000000000000000000000000000000000010000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGGGCATTGTG---TGGGTAT...................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTG---TGGGTATGATTTG---------------------------------------------ATA----T--......................................................................................................................................................................................................................2111.001000000000100000000000000000000000000000000000000000000000000000
...................................................................................................GATTTCATTGT-----T-T--AT----G--TCT-----------------------------TTT------------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000100000000000000000000000000
droMoj3
AATGAAAAGAGATTTTTATAGGGGCTCCCAAGACTCGCTTACAGTAAAAGGTAATTT--ATGTT-----TTTG---TTGCTT--------TCT-TATTTAATGTCATTGT-----T-T--AT----A--TCATTTGGTATATTTTTTTTTAT-------TTTTT---GT-----------AGTT-A------TAT-------------------------------------TTAGCATGCGATTTTTG------------------------------------------TTT----------------------GCGACTT-TGATATTTACGTAGAAGCTT---------------------------------------------------TGCTTGGTTTTGATATTTATTTAATTGAATTATTTATTTTACT--GGTTTAGGAAC-TTATG-----------ATTTG---------------------------------------------ACG----A-----AATTGTCATTTCTAAGCACTTGAACT-------AATGTAGTT---CGTA------------TAA--CA----AACTGATTTTGG-G--------------------TCGAAGAATTTTAT--TGTTAAGACAT---AATTACTAATCTCGTTCA---ACAGAATCACCCGATGATTACCCCAGCACAAGTTCAACTCCGATTGGACGACGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGAAC-TTATG-----------ATTTG---------------------------------------------ACG----A-----AATTGT.............................................................................................................................................................................................................2811.001000001
droGri2
AATGAAAAGAGATTTTTATAGGGGCTCGCAAGACTCCCTCACTGTTAAAGGTAATTT--CTGTT-----TGAA---TT------GTT--CT-------------CATTGT-----------------TTTCA-------------------T-------CTTTT---GA----------------TTACCATTTATTAATATCATTTTGTTAATGGTTTTG--------TTTTAAGCATGCG-----------TTAACTGGTATTATTAGTAATTATTATTATAATTA---T-------------------------CACGTTT-------TTGGTTTGGGGG-----------------------------------------------------------------------------------------------------------CATTATGGTTTGGATATGATTTAGTTA-----------------------------------------ATT------------------------------------------AATTA------------------------------TATTTAACT----AATA-CAGTAGTGATTGCAATGAAGAA-GAAGAATTGTATTACATTAAGTCAT---AACTACTAATCTCGTTCA---ACAGAGTCACCCGACGACTATCCCAGCACAAGTTCAACTCCGATTGGACGACGGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 01:42 PM