ID:

dsi_24976

 Coordinate:

3r:10483196-10483454 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-38.4 -38.4 -38.4

Flybase annnotation

CDS [3r_10482671_10483195_+]; exon [3r_10482560_10483195_+]; CDS [3r_10483455_10483622_+]; exon [3r_10483455_10483712_+]; intron [3r_10483196_10483454_+]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
mature
  1. dsi_24976  3r:10483366-10483380 +
  2. node_55119:1443-1457 +
star

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTGTGCGCCGCCAGGCAGTCGATGTGTCGCCCTTGCGTCGCGTCAACCAGGTAAATGTATTCCCATTCCATAAAGTCGTATGAAGTTAAAAATAGTAATTTTTAGGGAACTTCTTGTTGTTAAGAAAGTTACCTACTTAATTCTTATAGACACTTGGATCTTCTCCCCTTAACTTTAAAATAAAAGATAACACATACTAATTTAAATTTTAATAATTTAAAAACACTAGCAGATAGTTATTTTTATCCATTATAATAAGTCCAAATAGAAATAGCCACAATAAAGTTAATAACTGAATGCTTTTTGCAGGCAATTTGGTTAATCTGCACTGGAGCACGTGAGGCTGCCTTCCGCAACAT
**************************************************(((((.((((((......((((......))))....(((((((....)))))))(((((..(((((((..(((((((((.....)))...))))))..))))...)))..)))))...(((((((((.......................((((((((.....))))))))..............(((((((((((..................))))))))))).....))))))))).....))))))..)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR902008
ovaries
 M023
head
 M025
embryo
 O001
Testis
...............................................................................................................................................................................................................................................................................................................................TAATTTGCACTGGAGCACGTGAGGC............... 25 1 1 4.00 4 3 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................TTTGGCTAATTTGCACTGGAGCACG..................... 25 2 1 4.00 4 2 0 0 0 0 2 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................TAATCTGCACTGGAGCACGTGAGGC............... 25 0 1 4.00 4 0 2 0 2 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................TTTGCACTGGAGCACGTGAGGCTGCC........... 26 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................TGGCTAATCTGCACTGGAGCACGTG................... 25 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
....GCGCCGCCAGGCAGTCGG................................................................................................................................................................................................................................................................................................................................................. 18 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................CAGGCAATTTGGCTAATCTGCACTGGA.......................... 27 1 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0
................AGTCGATGTGTCGCCCTTGC................................................................................................................................................................................................................................................................................................................................... 20 0 1 2.00 2 0 0 0 0 1 0 0 0 0 1 0
...........................................................................................................................................................................................................................................................................................................................TGGCTAATTTGCACTGGAGCACGTGA.................. 26 2 1 2.00 2 1 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................................................................................................................GCACTGGAGCACGTGAGGCTG............. 21 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................TGGCTAATTTGCACTGGAGCACGTGAG................. 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....CGCCGCCAGGCAGTCGATGTGT............................................................................................................................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
............AGGCAGTCGATGTGTCGCCCTT..................................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.........GCCAGGCAGTCGATGTGT............................................................................................................................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........................CGCCCTTGCGTCGTGT............................................................................................................................................................................................................................................................................................................................ 16 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........................GTCGCCCTTGCGTCGCGT............................................................................................................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................TTGGCTAATCTGCACTGGAGCA....................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................GTGTCGCCCTTGCGTCGTGT............................................................................................................................................................................................................................................................................................................................ 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..............GCAGTCGATGTGTCGCC........................................................................................................................................................................................................................................................................................................................................ 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................AGTCGATGTGTCGCCCTT..................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1
....GCGCCGCCAGGCAGTCGATGTGTC........................................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...........CAGGCAGTCGATGTGTCGCCCTTGCGT................................................................................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................AATCGGCCCTGGAGCACGTGAGG................ 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................AGTCGATGTGTCGCCCTTGCGTCGC.............................................................................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.........GCCAGGCAGTCGATGTGTC........................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................ATCTGCACTGGAGCACGTGAGGC............... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................TTTGGCTAATTTGCACTGGAGCACGTG................... 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................TAGACACAATGAAGTTAATAACTGAA.............................................................. 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................GTCGCCCTTGCGTCGAGTCAACCAGGCAA................................................................................................................................................................................................................................................................................................................. 29 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................TGCACTGGAGCACGTGAGGCT.............. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................TTGGCTAATCTGCACTGGACCACGTGA.................. 27 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................GTGTCGCCCTTGCGTC................................................................................................................................................................................................................................................................................................................................ 16 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.TGTGCGCCGCCAGGCAGTCGATGTGTC........................................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................TTGGCTAATTTGCACTGGAGCACGTGA.................. 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................TAATTTGCAATGGAGCACGTGAGGC............... 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................CAGGCAATTTGGTTAATCTG................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................................................................................................................................................CTGCACTGGAGCACGTGAGGCTGC............ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............AGGCAGTCGATGTGTC........................................................................................................................................................................................................................................................................................................................................... 16 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................TTTGGCTAATCTGCACTGGAGCACG..................... 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................TTTGCACTGGAGCACGTGAGGCTGCG........... 26 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................................................................................................................TAATTTGCACTGGAGCACGTGAGGCTGC............ 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................TCGATGTGTCGCCCTTGCGTCGCGT............................................................................................................................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
............AGGCAGTCGATGTGTCGCCC....................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................TGGCTAATCTGCACTGGAGCACGTGA.................. 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........................GTCGCCCTTGCGTCGCGTCAACCAGGCAA................................................................................................................................................................................................................................................................................................................. 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................TAATTTGCACTGGAGCACGTGAGG................ 24 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
............................GCCCTTGCGTCGCGTCAACCAGG.................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................TCTGCACTGGAGCACGTGAGGCTGCCT.......... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................AATCTGCACTGGAGCACGTGAGGC............... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AAACACTAGCAGATA............................................................................................................................ 15 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
..GTGCGTCGCCAGGCA...................................................................................................................................................................................................................................................................................................................................................... 15 1 8 0.50 4 0 0 0 0 0 4 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................ACTGGAGCTCGTGAGGCTGCC........... 21 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................................................TTATAATAAGGCCAAGTAGAA......................................................................................... 21 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................................................................................................................GCACTGGAGCTCGTGAGGC............... 19 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................GAACGCGTGAGGCTGGCTTC........ 20 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
....................................GTCGCGTCAACCAGGA................................................................................................................................................................................................................................................................................................................... 16 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................CTGGACCGCGTGAGGC............... 16 2 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................AACTGAAGGATTTTTGCA................................................... 18 2 18 0.06 1 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................GCGTGAGGCTGGCTTC........ 16 2 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................TCTGCAATGGAGCAAGT.................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................CTTGTTGTTCAGAAACT...................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................TTGTTGTTGAGAAAG....................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................TAATGAGTCCAAATATA.......................................................................................... 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

GACACGCGGCGGTCCGTCAGCTACACAGCGGGAACGCAGCGCAGTTGGTCCATTTACATAAGGGTAAGGTATTTCAGCATACTTCAATTTTTATCATTAAAAATCCCTTGAAGAACAACAATTCTTTCAATGGATGAATTAAGAATATCTGTGAACCTAGAAGAGGGGAATTGAAATTTTATTTTCTATTGTGTATGATTAAATTTAAAATTATTAAATTTTTGTGATCGTCTATCAATAAAAATAGGTAATATTATTCAGGTTTATCTTTATCGGTGTTATTTCAATTATTGACTTACGAAAAACGTCCGTTAAACCAATTAGACGTGACCTCGTGCACTCCGACGGAAGGCGTTGTA
**************************************************(((((.((((((......((((......))))....(((((((....)))))))(((((..(((((((..(((((((((.....)))...))))))..))))...)))..)))))...(((((((((.......................((((((((.....))))))))..............(((((((((((..................))))))))))).....))))))))).....))))))..)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
.......GGCGGTCCGTCAGCTACACAG........................................................................................................................................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
.............................GGGAACGCAGCTCAGTTGGT...................................................................................................................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................TAGACGTGACCTCGTGCACTC................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0
.ATACGCGGCGGTCCGTCAGCTA................................................................................................................................................................................................................................................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0
.......GGCGGTCCGTCAGCTACACA............................................................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0
..AACGCGGCGGTCCGTCAGCTAC............................................................................................................................................................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................TCTGCATACTTCAACTTTGAT......................................................................................................................................................................................................................................................................... 21 3 3 0.67 2 0 2 0 0 0 0 0 0
..TTTGCGGCGGTCCGTCAGCTA................................................................................................................................................................................................................................................................................................................................................ 21 3 2 0.50 1 1 0 0 0 0 0 0 0
....................................................................................................AAAGCACTTGAAGAACAATAAT............................................................................................................................................................................................................................................. 22 3 2 0.50 1 0 1 0 0 0 0 0 0
...........................................................AAGGAGAAGGTGTTTCAGCAT....................................................................................................................................................................................................................................................................................... 21 3 4 0.50 2 0 2 0 0 0 0 0 0
...............................................................................................................AGAACAACAATTTTTTTAATGAAT................................................................................................................................................................................................................................ 24 3 2 0.50 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................TAGACGTGATCTCCTGCA.................... 18 2 3 0.33 1 0 0 1 0 0 0 0 0
..................................................................................................AAAAATGCCTTGATGAAC................................................................................................................................................................................................................................................... 18 2 6 0.17 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................AAGTTTTATTTTCGATTGTTTAT................................................................................................................................................................... 23 3 13 0.15 2 0 2 0 0 0 0 0 0
..........................................................................................................................................................................TTGATAGTTTATTTGCTATTG........................................................................................................................................................................ 21 3 11 0.09 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................AGGTATGATGAAATTTAAAAT.................................................................................................................................................... 21 3 12 0.08 1 0 0 0 0 0 1 0 0
.................................................................................................................................ATGGATGTATTAAGA....................................................................................................................................................................................................................... 15 1 12 0.08 1 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................TGCCTGGTTAAATTTAAAATT................................................................................................................................................... 21 3 16 0.06 1 0 1 0 0 0 0 0 0
...................................................................................................................................GGGTGTATTAAGAATAT................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1
...........................................................................................................................................................................................................................................................TATTATTCAGGTTTT............................................................................................. 15 1 20 0.05 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................AGCTAGTGCACTCCGATG............ 18 3 20 0.05 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................................AAAAAATAGGTAATAT......................................................................................................... 16 1 20 0.05 1 0 0 0 0 0 0 1 0

Generated: 04/24/2015 at 10:48 AM