ID:

dsi_24973

 Coordinate:

2r:4842926-4843075 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-6.2 -6.1 -6.1

Flybase annnotation

CDS [2r_4842568_4842925_-]; exon [2r_4842321_4842925_-]; intron [2r_4842926_4843266_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AACAAACAAACGCTAATTGGCTCAAGTCGAATTAACTTCATCAAGTAACGCTAGGTGTCGTAAGCCGTATAAGTGTACCCTCGATCTGTGTAGTATGTATCCATTGTACTACCTAAACCGCACCCCACTCAATCAATCAATCGATCAATCGAAAGCCTGCCAACTCCAATTCAAGCATTTTGGTTGTCAAATTTACACAGTGGCTACATCAATCAGTCGCTAGAAGTCGACGAATACTTTCCCCTGCTAA
**************************************************************************.......((......((((((((.......))))))))......))........................********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 GSM343915
embryo
 M024
male body		 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
...............................................................................................................................................................................................................ATCAATCAGTCGCTAGAAGT....................... 20 0 1 2.00 2 1 1 0 0 0 0 0 0 0
..........................................................................GTACCCTCGATCTGTGTAGT............................................................................................................................................................ 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0
............................................GGAACGCTAGGTGTCGT............................................................................................................................................................................................. 17 1 1 1.00 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................CATCAATCAGTCGCTAGAAGT....................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................GTCGAATTAACTTCATCAAGTAACGC....................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................CAATCGCAAGCCTGCCAACTCC................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................AATCAGTCGCTAGAAGTC...................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0
............................................................................................................................CCACTCAATCAATCAATCGA.......................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................GCTAGAAGTCGACGAATACTTTCCCCTG.... 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................CGCTAGAAGTCGACGAATACTTTCCCCT..... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................CTACATCAATCAGTCGCTAGAAGTC...................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CAATCAGTCGCTAGAAGTC...................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CATCAATCAGTCGCTAGAAGTC...................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................CCTAGGTGTCGTAAGCT........................................................................................................................................................................................ 17 2 4 0.50 2 0 0 0 0 0 0 0 2 0
..................TGCTCTAGTCGAATTAACTTG................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 1 0
..................................................CTCGGTGTCGTAAGCT........................................................................................................................................................................................ 16 2 18 0.06 1 0 0 0 0 0 0 0 0 1
.................................................................................CGATCTGTGTAGGATA......................................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

TTGTTTGTTTGCGATTAACCGAGTTCAGCTTAATTGAAGTAGTTCATTGCGATCCACAGCATTCGGCATATTCACATGGGAGCTAGACACATCATACATAGGTAACATGATGGATTTGGCGTGGGGTGAGTTAGTTAGTTAGCTAGTTAGCTTTCGGACGGTTGAGGTTAAGTTCGTAAAACCAACAGTTTAAATGTGTCACCGATGTAGTTAGTCAGCGATCTTCAGCTGCTTATGAAAGGGGACGATT
**********************************************************************************************************.......((......((((((((.......))))))))......))........................************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
....................................................................................................................................................AGCTTTCGGACGGTTGAGGTT................................................................................. 21 0 1 1.00 1 1 0 0 0 0
...................................................................................................AGGTACCATTATGGATTT..................................................................................................................................... 18 2 5 0.20 1 0 0 1 0 0
.......................................................................................................................................CAGTTCGCTAGTTAGCTT................................................................................................. 18 2 8 0.13 1 0 0 0 1 0
...........................................................................................................................................................................................................................................TGAAAGCGGACGATT 15 1 16 0.13 2 0 2 0 0 0
.................................................................................................ATAGGTAACTTGATG.......................................................................................................................................... 15 1 10 0.10 1 0 0 0 1 0
................................................................................................................................ATTTAGGTGGTTAGCTAGTTA..................................................................................................... 21 3 20 0.10 2 2 0 0 0 0
....................................................................TATTCACATGGGAGCTATATACG............................................................................................................................................................... 23 3 12 0.08 1 0 0 0 0 1
......................................................................................................................................................................................................TGACCGATGTAGTTGGT................................... 17 2 12 0.08 1 0 1 0 0 0
.....................................AGTAGATAATTGCGTTCCA.................................................................................................................................................................................................. 19 3 14 0.07 1 0 1 0 0 0
......................................................................................................................................................................................................................TGAGCGATCTCCATCTGCT................. 19 3 15 0.07 1 0 1 0 0 0
......ACTTGCTATTAACCGAGT.................................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 1 0 0
....................................................................................................................................................................AGGTCAAGTTCGTAA....................................................................... 15 1 20 0.05 1 0 1 0 0 0

Generated: 04/23/2015 at 07:11 AM