ID:

dsi_24952

Coordinate:

3l:15930170-15930319 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTCTATTATTTTTTCATTGGACGTTGTTATAAATAGACCTTGAAAAAGCCAATGATGATAGATCAAGTGACAAATCAGTTTTTTGACTGCGTTACAAATCATCGAATCAACTTAATTAGTCATTTTGAATTCGTTATAGAATTTTCCTCTACTTGTTTAGTAAATTCTATACTAATACAATATTTTTCCTTTAAATTCAGTTATGTAAGGAACAGCTCACTTCACTTCGAACCCTGAACTTGACCCAAAT ************************************************...((((((.......(((((....(((((....))))).)))))..))))))((((..(((.(((.(((......((((((......))))))......))).))).)))..)))).................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	M023 head
........................................TGAAAAAGCCAATGA...................................................................................................................................................................................................	15	0	1	1.00	1	1	0	0
.........................GTTATACATTGAACTTGAAAAA...........................................................................................................................................................................................................	22	3	4	0.25	1	0	1	0
...........................................................................................................................................................................................................................CTGCACTTCGAACCCTAAC............	19	3	18	0.06	1	0	0	1
........................................TGAACAAGTCAAGGATGAT...............................................................................................................................................................................................	19	3	20	0.05	1	1	0	0

Anti-sense strand reads

AAGATAATAAAAAAGTAACCTGCAACAATATTTATCTGGAACTTTTTCGGTTACTACTATCTAGTTCACTGTTTAGTCAAAAAACTGACGCAATGTTTAGTAGCTTAGTTGAATTAATCAGTAAAACTTAAGCAATATCTTAAAAGGAGATGAACAAATCATTTAAGATATGATTATGTTATAAAAAGGAAATTTAAGTCAATACATTCCTTGTCGAGTGAAGTGAAGCTTGGGACTTGAACTGGGTTTA ************************************************...((((((.......(((((....(((((....))))).)))))..))))))((((..(((.(((.(((......((((((......))))))......))).))).)))..)))).................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	M023 head	M024 male body	SRR618934 dsim w501 ovaries
........................AAAATATTTGCCTGGAACTTTT............................................................................................................................................................................................................	22	3	2	0.50	1	0	1	0	0	0	0
...............................................................................................TTTCCTAGCTTAGTTGAA.........................................................................................................................................	18	2	3	0.33	1	1	0	0	0	0	0
..........................AAAAATTATCTGGAACTTT.............................................................................................................................................................................................................	19	2	8	0.13	1	1	0	0	0	0	0
................................................................................................................................................................ATTCAAGATATGATTA..........................................................................	16	1	9	0.11	1	0	0	1	0	0	0
.............................................................................................TGTTTAGTACCACAGTTGAA.........................................................................................................................................	20	3	11	0.09	1	0	0	1	0	0	0
..............................................................................................................................................AAAGGAAATGAACAAACTATT.......................................................................................	21	3	17	0.06	1	1	0	0	0	0	0
............................................................................................................................................................................................................................CAGTAAAGCTGGGGACTTG...........	19	3	17	0.06	1	0	0	0	1	0	0
............................................................................................................................................................................................................................CAGTAAAGCTTGGGCCTTG...........	19	3	18	0.06	1	0	0	0	0	1	0
..........................................TCTTTCGGTTACTACGGTC.............................................................................................................................................................................................	19	3	20	0.05	1	0	0	1	0	0	0
...........................................................................GCCCACAAACTGACGCAAT............................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1
.........................................................................................................................................................................................AAGGAAATTCAAGTC..................................................	15	1	20	0.05	1	0	0	1	0	0	0

Generated: 04/23/2015 at 10:53 PM