ID:

dsi_2494

 Coordinate:

3r:10644063-10644212 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-6.4 -6.0 -5.8 -5.5

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CCAGAAAATCAAATTTCAATCAGAAAATGGCGTTAAAAAGAATCAATAAGGTATGTGAAAAAAGGAATATCTCAAAAAACTTTGCGAAACAAACTAAAAAAAGACAGAACAGAACACTTGCGATACACCAAAATGATAGTAGAAAAAATTGTGAACAGACATCAGTTTTCAACGGGAGAAAAATTTTATGCAAGAAATGTGAAACGTAGGTAGTACCCGACGAAAAGAAAGAAGAAGCGGGGAAAGAAGC
*************************************************************************************************....................((...................((.(((((...(((......)))....))))).))....))*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 O002
Head
 GSM343915
embryo
 M023
head
 SRR902008
ovaries
 SRR902009
testis
 M024
male body		 SRR1275487
Male larvae
......................................................................................................................................................................................................................................GAATCAGCGGGGAAAGAAG. 19 2 4 4.25 17 9 0 7 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................AGAATCAGCGGGGAAAGAA.. 19 2 7 3.86 27 11 0 12 0 1 0 0 3 0 0 0 0 0 0
......................................................................................................................................................................................................................................GAATCAGCGGGGAAAGAA.. 18 2 10 2.80 28 9 0 14 1 1 1 2 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................AGAATCAGCGGGGAAAGAAG. 20 2 4 2.25 9 5 0 1 0 0 0 0 3 0 0 0 0 0 0
.....................................................................................................................................................................................................................................AGAATCAGCGGGGAAAGA... 18 2 12 2.00 24 4 0 6 5 1 1 2 4 0 0 0 0 1 0
......................................................................................................................................................................................................................................GAATCAGCGGGGAAAGA... 17 2 19 1.11 21 0 1 0 2 6 0 11 0 0 0 0 0 0 1
...........AATTTCAATCAGAAAATGGCG.......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................CGTTAAAAAGAATCAATAA......................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................AAAAAGACAGAACAGAACACT.................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AGACAGAACAGAACACTTGCG................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................ATCAGAAAATGGCGTTAA...................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........AATTTCAATCAGAAAATG............................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............TTCAATCAGAAAATGGCGTTAAAAAGAA................................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....AAATCAAATTTCAATCAGA.................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................AGTAGAAAAAGTTGTGAACAG............................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................TACCCGAGGAAAAGAAA.................... 17 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................TGGCGTTAAAAAGAATCAATAAGGAAC.................................................................................................................................................................................................... 27 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................AAACTAAAAAAAGACAGAACAGA......................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTAAAAAGAATCAATAAGGT...................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CGACGAAAAGAAAGAAGAAGCGG.......... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................GAAAATGGCGTTAAAAAGA................................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............TTCAATCAGAAAATGGCGTTAAAAAGA................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......AATCAAATTTCAATCAGA.................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................AAAAAGACAGAACGGAACACT.................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................GAAAATGGCGTTAAAAAGAA................................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................TTAAAAAGAATCAATAAGGTA..................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................ACATCAGTTTTCAACGGGAGA....................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................CAGCGGGGAAAGAAG. 15 1 19 0.63 12 0 0 0 3 6 0 3 0 0 0 0 0 0 0
....................CAGCAAATGGCGTTCAAGAG.................................................................................................................................................................................................................. 20 3 15 0.60 9 0 0 0 2 7 0 0 0 0 0 0 0 0 0
.........................AATGGCGTTAATAAGATTCAAG........................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................TCAGCAAATGGCGTTCAAGAG.................................................................................................................................................................................................................. 21 3 6 0.33 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................TAAAAAGAATCAATAAGGAACT................................................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
....................CAGCAAATGGCGTTCAAAAGT................................................................................................................................................................................................................. 21 3 10 0.20 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................CTGGAGAAAATTTTTATG............................................................ 18 2 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................AGAATCAGCGGGGAAAG.... 17 2 20 0.10 2 0 0 0 0 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TGAATCAGCGGGGAAAGAAG. 20 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................AATGATAGTAAAAAAA....................................................................................................... 16 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................ATGCAAGAAGTGTGA................................................ 15 1 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................TCAGCAAATGGCGTTCAAGA................................................................................................................................................................................................................... 20 3 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CCCGAGGAAAAGAAAT................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................TGTGAAGAGACATGAG..................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................TAAAAAGACAGATCAGAA........................................................................................................................................ 18 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................CATCAGTTTTCGCCGGG.......................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GGTCTTTTAGTTTAAAGTTAGTCTTTTACCGCAATTTTTCTTAGTTATTCCATACACTTTTTTCCTTATAGAGTTTTTTGAAACGCTTTGTTTGATTTTTTTCTGTCTTGTCTTGTGAACGCTATGTGGTTTTACTATCATCTTTTTTAACACTTGTCTGTAGTCAAAAGTTGCCCTCTTTTTAAAATACGTTCTTTACACTTTGCATCCATCATGGGCTGCTTTTCTTTCTTCTTCGCCCCTTTCTTCG
***********************************************************************....................((...................((.(((((...(((......)))....))))).))....))************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 M023
head
 M025
embryo
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
...................AGTCGTTTACCGCAAGTTCTC.................................................................................................................................................................................................................. 21 3 6 2.00 12 0 8 0 0 0 0 3 1 0 0
..............................................................................................................................................................................................................................TTTTCTTTCTTCTTCGCCCCTT...... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................GCCCTCTTTTTAAAATAC............................................................ 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................TGGGCTGCTTTTCTTTCTTCT............... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................GTCTGTAGTCAAAAGTTGCCC.......................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................TGTCTGTAGTCAAAAGTTGCCCTC........................................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................TGTCTTGTGGACGCTATGTGG......................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................AGTCTTTTACCGCAATTTTTC.................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...................AGTCGTTTACCGCAAGTTCT................................................................................................................................................................................................................... 20 3 19 0.58 11 0 10 0 0 0 0 1 0 0 0
........................................TTAGTTATTTCAAACACTTT.............................................................................................................................................................................................. 20 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0
.................TGAGTCGTTTACCGCAAGTT..................................................................................................................................................................................................................... 20 3 18 0.28 5 0 3 0 0 0 0 2 0 0 0
...............................................................................GAAACGCTTTGTTGG............................................................................................................................................................ 15 1 9 0.22 2 0 0 0 0 0 0 0 0 0 2
....................GTCGTTTACCGCAAGTTCTC.................................................................................................................................................................................................................. 20 3 15 0.20 3 0 2 0 0 0 0 0 1 0 0
................ATGAGTCTTTTACCGCAAGTT..................................................................................................................................................................................................................... 21 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0
......................................TCTTAGTTAGTCCAT..................................................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 0 0 0 0 1 0 0
................ATGAGTCGTTTACCGCAATT...................................................................................................................................................................................................................... 20 3 17 0.06 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................TCTGTCTTGTCATGGG..................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0

Generated: 04/24/2015 at 10:45 AM