ID:

dsi_24925

 Coordinate:

3r:3718620-3718769 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.1 -3.4 -3.3

Flybase annnotation

three_prime_UTR [3r_3718284_3718723_+]; exon [3r_3718253_3718723_+]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################------------------------------------------------------------------------------------------------
TACAAAATGTACCTCGAATTGTTTGTAGTCGCGAAACATTTCCAAAGCCTTTAAGTACCGATATCGTGCTCGCTACTAATTGCTTAATGTAAAATTGTGATGTGTTTAAACTTAGATACAAAATGTGTTGCAAATATATTTCTGTACTAACTAACCAACGCTGAATGCAAGCTCTTCTGAATTTGAAAGTTGTTTTCCAGCTCGAATACTCGAAGGGTCAACGAAACTGTTAACGACAGTACAATAAAAA
*************************************************************......((((((......((((.....))))....)))).)).............************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M024
male body		 M053
female body
 O002
Head
 M023
head
 SRR902008
ovaries
 O001
Testis
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
.........................................................................................TAAAATTGTGATGTGTTTAAACTTAGA...................................................................................................................................... 27 0 1 6.00 6 5 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................TGTAAAATTGTGATGTGTTTAAACT.......................................................................................................................................... 25 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0
....................................................................................TAATGTAAAATTGTGATGTGTTTAAACT.......................................................................................................................................... 28 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0
.............................................................TATCGTGCTCGCTACTAATTGCT...................................................................................................................................................................... 23 0 1 5.00 5 3 1 0 0 1 0 0 0 0 0 0 0
..................................AACATTTCCAAAGCCTTTAAGTACCGA............................................................................................................................................................................................. 27 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0 0
........................................TCCAAAGCCTTTAAGTACCGATATCGT....................................................................................................................................................................................... 27 0 1 4.00 4 2 1 1 0 0 0 0 0 0 0 0 0
.......TGTACCTCGAATTGTTTGTAGTCGCGAA....................................................................................................................................................................................................................... 28 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0
.........TACCTCGAATTGTTTGTAGTCGCGA........................................................................................................................................................................................................................ 25 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0
.........TACCTCGAATTGTTTGTAGTCGCGAAACA.................................................................................................................................................................................................................... 29 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0
.......................TGTAGTCGCGAAACATTTCCAAAGCCTT....................................................................................................................................................................................................... 28 0 1 3.00 3 0 2 0 0 1 0 0 0 0 0 0 0
...........CCTCGAATTGTTTGTAGTCGCGAAACA.................................................................................................................................................................................................................... 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
.......TGTACCTCGAATTGTTTGTAGTCGCGAAA...................................................................................................................................................................................................................... 29 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..........ACCTCGAATTGTTTGTAGTCGCGAAACA.................................................................................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.........TACCTCGAATTGTTTGTAGTCG........................................................................................................................................................................................................................... 22 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0
......................................................................................................................................TATATTTCTGTACTAACTAACCAACGC......................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TGTAAAATTGTGATGTGTTTAAACTTAGAA..................................................................................................................................... 30 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
........................................TCCAAAGCCTTTAAGTACCGATATCGTGC..................................................................................................................................................................................... 29 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.........................................................................TACTAATTGCTTAATGTAAAATTGTGA...................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CTCGAAGGGTCAACGAAACTGT.................... 22 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
.......................TGTAGTCGCGAAACATTTCCAAAGCC......................................................................................................................................................................................................... 26 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0
..............................................GCCTTTAAGTACCGATATCG........................................................................................................................................................................................ 20 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.......TGTACCTCGAATTGTTTGTAGTCGCGAAACA.................................................................................................................................................................................................................... 31 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAATTGTGATGTGTTTAATCTTAGA...................................................................................................................................... 27 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
...............GAATTGTTTGTAGTCGCGA........................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAACTTAGATACAAAATGTGT.......................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............TCGAATTGTTTGTAGTCGCGAAACA.................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TCTGTACTAACTAACCAACGCTGAA..................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..................TTGTTTGTAGTCGCGAAACATTTCCA.............................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................TAATGTAAAATTGTGATGTGTTTAAAC........................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................TGAATGCAAGCTCTTCTGAA..................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
..CAAAATGTACCTCGAATTGTTTGTA............................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................TTGTTTGTAGTCGCGAAACATTTCCAA............................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TCTGAATTTGAAAGTTGTTTTCCAGC................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................AACCTTTCCAAAGCCTTTAAGTACCGA............................................................................................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TCGAAGGGTCAACGAAACTGT.................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................TAGTCGCGAAACATTTCCAAAGCC......................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................TCCAAAGCCTTTAAGTACCGATATCGTGCT.................................................................................................................................................................................... 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................TACCGATATGGTGCTCGCTACTAAT.......................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TTTAAACTTAGATACAAAATGTGG.......................................................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..CAGGATGTACCTCGAATTGTT................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....AAATGTACCTCGAATTGTTTGTAGT............................................................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......TGTACCTCGAATTGTTTGTAGTCGC.......................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................TTGTAGTCGCGAAACATT.................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................TCCAAAGCCTTTAAGTACCGATATC......................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................AAAATTGTGATGTGTTTAAACTTAGAA..................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TGTTTAAACTTAGATACAAAATGTGT.......................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TGTGATGTGTTTAAACTTAGATACAAAA............................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TGTACTAACTAACCAACGCTGAATGCAAGC.............................................................................. 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........TACCTCGAATTGTTTGTAGTCGC.......................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................TTGTTTGTAGTCGCGA........................................................................................................................................................................................................................ 16 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TCGAAGGGTCAACGAAACTGG.................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................TAATTGCTTAATGTAAAATTGTGATGTGTT................................................................................................................................................ 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TGTGTTGCAAATATATTTCTGTACT...................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................AAAATTGTGATGTGTTTAAACTTAGA...................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TACAAAATGTGTTGCAAATATATTTC............................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
......ATGTACCTCGAATTGTTTGTAGTCGCGA........................................................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................TGTAGTCGCGAAACATTTCCAAAGCCG........................................................................................................................................................................................................ 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.........TACCTCGAATTGTTTGTAGTCGCGAAACATT.................................................................................................................................................................................................................. 31 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................TAATGTAAAATTGTGATGTGTTTAAACTT......................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................TGCTTAATGTAAAATTGTGATGTGTT................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................TGTAGTCGCGAAACATTTCCAAAGC.......................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................TTTCCAAAGCCTTTAAGTACCGATA........................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................GTTTGTAGTCGCGAAACATT.................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........TACCTCGAATTGTTTGTAGTCGCGAA....................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................GTAAAATTGTGATGTGTTTAAACTT......................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.........TACCTCGAATTGTTTGTAGTC............................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..............CGAATTGTTTGTAGTCGCGAAACA.................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ATACTCGAAGGGTCAACGAAACTGTT................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AATTGTGATGTGTTTAAACTTAGA...................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................TGTTTGTAGTCGCGAAACA.................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................TTTGTAGTCGCGAAACATTTCCAAAGC.......................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TGTTTAAACTTAGATACA.................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................TCTAAAGCCTTTAAGTACCGA............................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAATTGTGATGTGTTTAATCTTAGAA..................................................................................................................................... 28 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................TACTAACTAACCAACGCTGAATGCAAGC.............................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........TACCTCGAATTGTTTGTAGTCGCGAAA...................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................TACCGATATCGTGCTCGCTACTAAT.......................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................TATATTTCTGTACTAACTAAAAA............................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................TACCGATATCGTGCTCGCT................................................................................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TGAAAGTTGTTTTCCAGCTCGAATAC......................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................TGTAAAATTGTGATGTGTTTAAACTTAGA...................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................TCGTGCTCGCTACTAATTGCTTAATG................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAATGTGATGTGTTTAATCTTAGA...................................................................................................................................... 27 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................TTAAGTACCGATATCGTGCTCGCTAC.............................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................ATTGTGATGTGTTTAAACTTAGATACA.................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................TACCGATATCGTGCTCGCTACTAA........................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAACTTAGATACAAAATGTGTTGC....................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................TAATTGCTTAATGTAAAATTGTGATG.................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................TACCGATATCGTGCTCGCTAC.............................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
....................................CATTTCCAAAGCCTTTAAGTACCGA............................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TGTGATGTGTTTAAACTTAGATACAAAAA.............................................................................................................................. 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TACTCGAAGGGTCAACGAAACTGT.................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CTAACTAACCGTCGCTGTA..................................................................................... 19 3 7 0.71 5 0 0 0 0 0 0 0 0 0 0 1 4
.............................................................................................................................................CTGTACTAACGAACC.............................................................................................. 15 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................TACAAAATGTGTTGCA...................................................................................................................... 16 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
........................GTAGACGCGAAACCTT.................................................................................................................................................................................................................. 16 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................CCGAGATCGTGCTCGAT................................................................................................................................................................................ 17 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 1 0
..................TTGTTTTTAGTCGTGAAA...................................................................................................................................................................................................................... 18 2 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................ACTCGCAGGGTCAACA........................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................CGATGGGTTTAAACTTCGA...................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ATGTTTTACATGGAGCTTAACAAACATCAGCGCTTTGTAAAGGTTTCGGAAATTCATGGCTATAGCACGAGCGATGATTAACGAATTACATTTTAACACTACACAAATTTGAATCTATGTTTTACACAACGTTTATATAAAGACATGATTGATTGGTTGCGACTTACGTTCGAGAAGACTTAAACTTTCAACAAAAGGTCGAGCTTATGAGCTTCCCAGTTGCTTTGACAATTGCTGTCATGTTATTTTT
**************************************************************************************************************************************......((((((......((((.....))))....)))).)).............************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O001
Testis
 M024
male body		 SRR618934
dsim w501 ovaries
 M053
female body
 O002
Head
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
......................................................................................................................................................GATTGGTTGCGACTTACGTTC............................................................................... 21 0 1 2.00 2 1 0 0 1 0 0 0 0
...........................................................................................................................................................................................TCAACAAAAGGTCGAGCTTAT.......................................... 21 0 1 2.00 2 0 0 2 0 0 0 0 0
.........................................................................................................................................................................................................................AGTTGCTTTGACAATTGCTGT............ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................CGGAAATTCATGGCTATAGCG....................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................ATGGCTATAGCACGAGCGATG.............................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
........................CATCAGCGCTTTGTAAAGGT.............................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0
......................AACATCAGCGCTTTGTAAAGG............................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................TAACGAATTACATTTTAACAC....................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................................TTTGAATCTATGTTTTACACA.......................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0
..........................TCAGCGCTTTGTAAAGGTTTC........................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................GGTTTCGGAAATTCATGGCT............................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0
....................................................................................................................................................TCGATTGGTTTCGACTGACGTT................................................................................ 22 3 2 0.50 1 0 0 0 0 0 0 1 0
..................................................................................................................................................GATTCATTGGTTGCG......................................................................................... 15 1 7 0.14 1 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................AGTAGCTTGGACATTTGCT.............. 19 3 19 0.05 1 0 0 0 0 0 0 1 0
..................................................................................................................................................GATTGATTGGCAGCGA........................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:3718570-3718819 + dsi_24925 TACA-AAATGTACCTCGAATTGTTT-------GTA----GTCGCGA-----------------------------AACATTTCCAAAGCC-TTTAAGTACCGA-TATCGTGCTCGCTACTAA---TTGCTT-----AATGTAAA--------ATTGTGATGTGTTTAAA-CTTAGA-TA------------CA---AAATGTGTTGCAAA-TATA------TTTCTGTACTAACT--AACCAACGCTGAA-TGCAA-GCTCTTCTGAATTTGAAAGTT----GTT---TTCCAGCTCGAATAC---TCGAAGGG------TCAACGAAAC-TG--TTAACGACAGTA------------------CAATAAAAA
droSec2 scaffold_6:3899374-3899623 + TACA-AAATGTACCTCGAATTGTTT-------GTA----GTCGCGA-----------------------------AACATTTCCAAAGCC-TTTAAGTACCGA-TATCGTGCTCGCTACTAA---TTCCTT-----AATGTAAA--------ATTGTGATGTGTTTAAA-CTTAGA-TA------------CA---AAATGTGTTGCAAA-TATA------TTTCTGTACTAACT--AACCAACGCTGAA-TGCAA-GCTCTTCTGAATTTGAAAGTT----GTT---TTCCAGCTCGAATAC---TCGAAGGG------TGAACGAAAC-TG--TTAACGACAGTA------------------CAATAAAAA
dm3 chr3R:3831279-3831528 + TACA-AAATGTACCTCGAATTATTT-------GTA----GTCGCGA-----------------------------AACATTTCCAAAGCC-TTCAAGTACCGA-TATCGTGCTCGCTACTAA---TTGCTT-----AATGTAAA--------ATTGTGATGTGTTTAAA-CTTAGA-TA------------CA---AAATGTCTTGCAAA-TATA------TTTCTGTACTAACT--AACTACCGCTGAA-TGCAA-GCTTTTTTGAATTTGAAAGTG----GTT---TTCCAGCTCGATTCC---TCGAAGGG------TCAACGAAAC-TG--TTAACGACAGTA------------------TAATAAAAA
droEre2 scaffold_4770:4071599-4071846 + TACA-AAATGTACCTCGAATTGTTT-------GTA----GTCGTGT-----------------------------AACATTTCCA-AGCC-TTTAAGTACCGA-TACCGTGCTCGCTACTAA---TTGCTT-----AATGTAAA--------ATTGTGATTTGTTTAAA-CTTAGA-TA------------CT---AA-AGTGTTGCAAA-TATA------TTTCTGTACTAACTAT--CCTCCGCTGTA-TGCAA-GCGTTTCTGAATTCGAAAGTT----TTT---TTCCAGCTCGATCGC---TCAAAGGG------TCAACAAAAC-TG--TTAATGACAGCA------------------GATTAAAAG
droYak3 3R:6438853-6439089 - TACA-AAATGTACCTCGAATTGTTT-------GTA----GTCGTGT-----------------------------AACATTCTCAAAGCC-TTTAAGTACCGA-TACCGTGCTCGCTACTAA---TTGCTT-----ACTGTACA--------ATTGTGATTTGTTTAAT-CTTAGA-TA------------CA---AA-AGTGCTGCAAA-TATA------TTTCTGTACTAAAA--CACCTCTGCTGAA-TACAA-GCTTTTCTGAATTTAAAAGTT----GTT---TTCCAGGTCGAACGC---TCAAAGGG------TCAAC---------------GACAGCT------------------CAATAAAAA
droEug1 scf7180000409760:778470-778718 + TACA-ATATGTACCTCGAATTTTTC-------GTA----GTCGCGA-----------------------------ATCATTTCCAAAGCC-TTTAAGTATCGA-TATCGTGCTCGCTACTAA---TTGCTT-----AATGTAAA--------CTTGTGATTTGTTTAAA-CTTAGA-TA------------CA---AACTGTGTTGCAAA-TATA------TTTCTATACTAACTATAACCTACGATGCA-TGCTA-GCTTTTCTTAATTTGAAAGTT----ATT---TTCCAGACCAACCGC---TCATGCGG------TCAACGAAGC-CG--TTAACGACAG---------------------AAGAAAAG
droBia1 scf7180000302402:6074704-6074955 - TACA-ATATGTACCTCGAATTGTTT-------GTA----GTCGCGA-----------------------------AACATTTCCAAAGCC-TTTAAGTACCGA-TATCGTGCTCGCTACTAA---TTGCTT-----AATGTAAA--------CTTGTGATTTGTTTAAT-CTTAGA-TA------------CA---AAATGTGTTGCAAA-TATA------TTTCTATACTAACTGTAACTCATGCTCAA-TGCAA-GCTTTTCTTAATTTGAAAGTT----ATT---TTCCAGCTCAATCGC---CTGTAGGG------CCAACGAATC-CG--CTATCGACAGCG------------------CAATAAAAA
droTak1 scf7180000415711:76611-76835 + TACA-ATATGTACCTCGAATTGTTT-------GTA----GTCGCGA-----------------------------AACATTTCCAAAGCC-TTTAAGTACCGA-TATCGTGCTCGCTACTAA---TTGCTT-----ATTGTAAA--------CTTGTGATTTGTTTAAT-CTA------------------------------------------------------ATCTAACTGTAACCTCCGCTGAA-TGCAAGGCTCTTCTTAATTTGAAAGTT----ACT---TTCCAGCGCAATCGCTTCTTGCAGGG------TCAACGAAAC-CG--TTAACGACAGCT------------------CAGAAAAAT
droEle1 scf7180000491104:350708-350959 - TACA-ATATGTACCTCGAATTGTTT-------GTA----GTCGCGA-----------------------------AACATTTCCAAAGGC-TTTAAGTACCGA-TAATGTGCTCGCTACTAA---TTGCTT-----AATGTAAA--------CTTGTGATTTGTTAAAA-CTTAAA-TG------------TA---AAATGTGTTGCAAA-TATA------TTTCTATACTAACTTTAACCTGCGCTGAA-TGCGA-GCTTTTCCTAATTTGAAAGTT----ATT---TTCCAGCTCAATCGC---TCATGGGG------TCAACGAAAC-CG--TAAACGACAACA------------------CACAAAAAA
droRho1 scf7180000777977:156194-156435 + TATA-ATATGTACCTCGAATTGTTT-------GTT----TTCGCGA-----------------------------AACATTTCCAAAGCC-GTGAAGTACCGA-TGGTGTGCTAGCTACTAG---TTGCTT-----AATGTAAA--------CTTGTGATTTGTTTAAA-CTTAAA-TA------------CA---AAATGTGTTGCAAA-TATA------TTTCTATACTAACTGTAC-----GC-----TGCAA-GCTTTTCTTTATTTGAACATT-----TT---TTCCAGCTCAATCGC---TCGCAAGG------TCAACGAAAC-CG--TCAGTGACAGCA------------------GAATAAAAA
droFic1 scf7180000454096:904477-904730 - TAAAAAAATGTACCTCGAATTGTTT-------GTA----GTCGCGA-----------------------------AACATTTCCAAAGCC-TTTTAGTACCGA-TTTTGTGCTCGCTACTAA---TTGCTT-----AATGTAAAT-------TTTGTGATTTGTTTTAA-CATAGA-TA------------AA---AAATGTGTTGCAAA-TATA------TTTCTATACTAACTGTAAGCCACGTTGAC-TGCAA-GCTTTTCTTATTTTGAAAGTT----ACT---TTCCAGCTCGATCAC---CGGCGGGG------TCAACGAAAC-CG--TTAACGACAGCA------------------GAGAAAAAT
droKik1 scf7180000302475:1147499-1147762 - TACA-ATGTGTACCTCGAATTGTTG-------GTA----GTTGCAAA-----AA---------------------AACACTTT-GAAGCT-GTAAAGTACCGACTTTCTCGCTCGCTACTAA---TTGCTT-----AATGTAAAC-------TTTGTGATTTGTTTAAG-CTTAGATTAC-----------CA--GAAATGTGTTGCAAA-TATAAA----TCTTAATACTAACTGTAAACGGTGCTGTCTTGAAA-GATTTTCTTAATATGCTAGTT----TTC---TTCCAGCTTACCC------------G------TCAACGAATCACGAATTAACGACATCCCAGATGCA----------AAGGAAAAA
droAna3 scaffold_13340:10539591-10539850 + TGCA-ATATGTACCTCGAATTA----------GAA----GCTGCTG-----------------------------GTAACTTTGAAAG------------CGA-TTTAGAGCTCACTACTAA---TTTCTT-----AATGTGAATTTGTAAATGTGTGATTTGTCTAAA-TTAGGC-TA-------------A---CAATATGTTCCAAAATATA------C-TAAATACTAACTGTATGGC-GGATGCT-TTTGG-ATTTCTTTCAATCTTGATC------TTA---TTCTAGCTCAATCAT---GGCAAGGG------TCAACGAAAC-CA--CTAACGACACCACAGATGCTCGAGGAAAACCTGTAAACC
droBip1 scf7180000396374:536140-536387 - TGCA-ATATGTACCTCGAATTA----------GAA----GCTGCTG-----------------------------GCCATTTTGAAAGCG-ATTTAG----------AGAGCTAACTAATGA---TTTCTT-----AATGTAACTTTGTAAATGTGTGATTTGTTTTAA-TTAGTA-TAA-----------CA---AAATATGTTGCAAAATATA------C-TAAATACTAACTGTATACC-CGATGCT-TTTGG-A----TTATAATCTTAATA------TTA---TTCTAGCTCTATTAT---CCAAAGGG------TCAACGACAC-CA--CAGATGCTCGAG------------AAAAACCTGTAAAAT
dp5 2:10055138-10055410 - TACA-ATATGTACCTCGAATCGAACTTTTTCTGTATATAGT---AAGTCTTTAAAAGTCTTTAAAGCGCCTTGTTACCATTTCCGTAGCTGATTATGTATCGA-TTTATTGCTCGCTACTAA---TTGCTT-----ACAGTAAC--------CATGTGATTTGTTTAAG-CTTTCA--A------------CAAACCAATTTGTTGCAAA-AATAAATTCCTTTGTGTACTAACAATAAATC-TGTTG----CCAA-GCACTAACTAATCTCAGAGGT-C--G-TTTCCCCCAGCTCAAGCG-------------------AAACGAACC-C----------------------------------TATCCGAA
droPer2 scaffold_0:10426206-10426482 + TACA-ATATGTACCTCGAATCGAACTTTTTCTGTATATAAT---AAG-----AAAAGTCTTTGAAGCGCCTTGTTACCATTTCTGTAGCTGATTATGTATCGA-TTTATTGCTCGCTACTAA---TTGCTT-----ACAGTAAC--------CATGTGATTTGTTTAAG-CTTTCA--A------------CAAATTAATTTGTTGCAAA-AATAAATTCCTTTGTGTACTAACAATAAATC-TGTTG----CCAA-GCCCTAACTAATCTCAGAGGT-C--G-TTTCCCCCAGCCAAAGCG-------------------AAACGAAC--------ACTTTCCGAA------------------CGATCATAA
droWil2 scf2_1100000004943:10951946-10952154 - TACG-AAT-------------------------------------------------------------------------------------------------TATGCGCTCGCTACTAATAATTACTAAAAGAAATGTAAA--------CTTGTGATTTGTCTATGTCGTAGATTATAAAGAAAAGAAAGAAAAAAATTGTTGCAAATAATAAA----CGTCCAAACTAATCATAA-----AATGCT-TTCAA-A--TTTC-TAAATGGAAAGTGTCTCTAT---TCCCAGCTCTCA--G----------TTGAATGCTGAC------------AAAGCCCTTA------------------CAACCAAGA
droMoj3 scaffold_6540:11641351-11641379 + AACG-AAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--AAA--AAGAATG------------------CAATAAAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TACA-AAATGTACCTCGAATTGTTT-------GTA----GTCGCGA-----------------------------AACATTTCCAAAGCC-TTTAAGTACCGA-TATCGTGCTCGCTACTAA---TTGCTT-----AATGTAAA--------ATTGTGATGTGTTTAAA-CTTAGA-TA------------CA---AAATGTGTTGCAAA-TATA------TTTCTGTACTAACT--AACCAACGCTGAA-TGCAA-GCTCTTCTGAATTTGAAAGTT----GTT---TTCCAGCTCGAATAC---TCGAAGGG------TCAACGAAAC-TG--TTAACGACAGTA------------------CAATAAAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................TAAA--------ATTGTGATGTGTTTAAA-CTTAGA-.....................................................................................................................................................................................................2716.00600000051000000000
..........................................................................................................................................TGTAAA--------ATTGTGATGTGTTTAAA-CT..........................................................................................................................................................................................................2515.00500000050000000000
..................................................................................................................................T-----AATGTAAA--------ATTGTGATGTGTTTAAA-CT..........................................................................................................................................................................................................2815.00500000050000000000
........................................................................................................TATCGTGCTCGCTACTAA---TTGCT....................................................................................................................................................................................................................................................2315.00500010031000000000
...........................................................................AACATTTCCAAAGCC-TTTAAGTACCGA-..............................................................................................................................................................................................................................................................................2714.00400000031000000000
.................................................................................TCCAAAGCC-TTTAAGTACCGA-TATCGT........................................................................................................................................................................................................................................................................2714.00400000021001000000
........TGTACCTCGAATTGTTT-------GTA----GTCGCGA-----------------------------A..........................................................................................................................................................................................................................................................................................................2813.00300000021000000000
..........TACCTCGAATTGTTT-------GTA----GTCGCGA-----------------------------...........................................................................................................................................................................................................................................................................................................2513.00300000021000000000
..........TACCTCGAATTGTTT-------GTA----GTCGCGA-----------------------------AACA.......................................................................................................................................................................................................................................................................................................2913.00300000021000000000
........................T-------GTA----GTCGCGA-----------------------------AACATTTCCAAAGCC-TT.........................................................................................................................................................................................................................................................................................2813.00300010002000000000
............CCTCGAATTGTTT-------GTA----GTCGCGA-----------------------------AACA.......................................................................................................................................................................................................................................................................................................2712.00200000011000000000
........TGTACCTCGAATTGTTT-------GTA----GTCGCGA-----------------------------AA.........................................................................................................................................................................................................................................................................................................2912.00200000020000000000
...........ACCTCGAATTGTTT-------GTA----GTCGCGA-----------------------------AACA.......................................................................................................................................................................................................................................................................................................2812.00200000020000000000
..........TACCTCGAATTGTTT-------GTA----GTCG...........................................................................................................................................................................................................................................................................................................................................2212.00220000000000000000
...................................................................................................................................................................................................................TATA------TTTCTGTACTAACT--AACCAACGC................................................................................................................................2712.00200000020000000000
..........................................................................................................................................TGTAAA--------ATTGTGATGTGTTTAAA-CTTAGA-A....................................................................................................................................................................................................3012.00200000020000000000
.................................................................................TCCAAAGCC-TTTAAGTACCGA-TATCGTGC......................................................................................................................................................................................................................................................................2912.00200000020000000000
....................................................................................................................TACTAA---TTGCTT-----AATGTAAA--------ATTGTGA.......................................................................................................................................................................................................................2712.00200000020000000000
..............................................................................................................................................................................................................................................................................................................C---TCGAAGGG------TCAACGAAAC-TG--T......................................2212.00202000000000000000
........................T-------GTA----GTCGCGA-----------------------------AACATTTCCAAAGCC-...........................................................................................................................................................................................................................................................................................2612.00200010001000000000
.......................................................................................GCC-TTTAAGTACCGA-TATCG.........................................................................................................................................................................................................................................................................2012.00200000000002000000
........TGTACCTCGAATTGTTT-------GTA----GTCGCGA-----------------------------AACA.......................................................................................................................................................................................................................................................................................................3112.00200000020000000000
................GAATTGTTT-------GTA----GTCGCGA-----------------------------...........................................................................................................................................................................................................................................................................................................1911.00100000000001000000
.....................................................................................................................................................................TAAA-CTTAGA-TA------------CA---AAATGTGT..........................................................................................................................................................................2211.00100000000001000000
..............TCGAATTGTTT-------GTA----GTCGCGA-----------------------------AACA.......................................................................................................................................................................................................................................................................................................2511.00100000010000000000
...............................................................................................................................................................................................................................TCTGTACTAACT--AACCAACGCTGAA-...........................................................................................................................2511.00100000000000010000
...................TTGTTT-------GTA----GTCGCGA-----------------------------AACATTTCCA.................................................................................................................................................................................................................................................................................................2611.00100000000001000000
..................................................................................................................................T-----AATGTAAA--------ATTGTGATGTGTTTAAA-C...........................................................................................................................................................................................................2711.00100000010000000000
......................................................................................................................................................................................................................................................TGAA-TGCAA-GCTCTTCTGAA..........................................................................................................2011.00100000000000001000
..CA-AAATGTACCTCGAATTGTTT-------GTA----...............................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
...................TTGTTT-------GTA----GTCGCGA-----------------------------AACATTTCCAA................................................................................................................................................................................................................................................................................................2711.00100000010000000000
......................................................................................................................................................................................................................................................................TCTGAATTTGAAAGTT----GTT---TTCCAGC...............................................................................2611.00100000010000000000
..................................................................................................................................................................................................................................................................................................................TCGAAGGG------TCAACGAAAC-TG--T......................................2111.00101000000000000000
.................................TA----GTCGCGA-----------------------------AACATTTCCAAAGCC-...........................................................................................................................................................................................................................................................................................2411.00100000100000000000
.................................................................................TCCAAAGCC-TTTAAGTACCGA-TATCGTGCT.....................................................................................................................................................................................................................................................................3011.00100000001000000000
...................................................................................................................................................................TTTAAA-CTTAGA-TA------------CA---AAATGTGG..........................................................................................................................................................................2411.00100000000001000000
.....AAATGTACCTCGAATTGTTT-------GTA----GT.............................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
........TGTACCTCGAATTGTTT-------GTA----GTCGC..........................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
.......................TT-------GTA----GTCGCGA-----------------------------AACATT.....................................................................................................................................................................................................................................................................................................1811.00100000000001000000
.................................................................................TCCAAAGCC-TTTAAGTACCGA-TATC..........................................................................................................................................................................................................................................................................2511.00100000001000000000
.............................................................................................................................................AAA--------ATTGTGATGTGTTTAAA-CTTAGA-A....................................................................................................................................................................................................2711.00100000010000000000
.................................................................................................................................................................TGTTTAAA-CTTAGA-TA------------CA---AAATGTGT..........................................................................................................................................................................2611.00100000010000000000
..........................................................................................................................................................TGTGATGTGTTTAAA-CTTAGA-TA------------CA---AAA...............................................................................................................................................................................2811.00100000000001000000
.................................................................................................................................................................................................................................TGTACTAACT--AACCAACGCTGAA-TGCAA-GC...................................................................................................................3011.00100000010000000000
..........TACCTCGAATTGTTT-------GTA----GTCGC..........................................................................................................................................................................................................................................................................................................................................2311.00100000000001000000
...................TTGTTT-------GTA----GTCGCGA-----------------------------...........................................................................................................................................................................................................................................................................................................1611.00100000000001000000
..................................................................................................................................................................................................................................................................................................................TCGAAGGG------TCAACGAAAC-TG--G......................................2111.00101000000000000000
.......................................................................................................................TAA---TTGCTT-----AATGTAAA--------ATTGTGATGTGTT.................................................................................................................................................................................................................3011.00100000010000000000
.......................................................................................................................................................................................................TGTGTTGCAAA-TATA------TTTCTGTACT...............................................................................................................................................2511.00100000010000000000
.............................................................................................................................................AAA--------ATTGTGATGTGTTTAAA-CTTAGA-.....................................................................................................................................................................................................2611.00100000001000000000
.................................................................................................................................................................................TA------------CA---AAATGTGTTGCAAA-TATA------TTTC.....................................................................................................................................................2611.00100000000000010000
.......ATGTACCTCGAATTGTTT-------GTA----GTCGCGA-----------------------------...........................................................................................................................................................................................................................................................................................................2811.00100000010000000000
........................T-------GTA----GTCGCGA-----------------------------AACATTTCCAAAGCC-G..........................................................................................................................................................................................................................................................................................2711.00101000000000000000
..........TACCTCGAATTGTTT-------GTA----GTCGCGA-----------------------------AACATT.....................................................................................................................................................................................................................................................................................................3111.00100000010000000000
..................................................................................................................................T-----AATGTAAA--------ATTGTGATGTGTTTAAA-CTT.........................................................................................................................................................................................................2911.00100000010000000000
..............................................................................................................................TGCTT-----AATGTAAA--------ATTGTGATGTGTT.................................................................................................................................................................................................................2611.00100000010000000000
........................T-------GTA----GTCGCGA-----------------------------AACATTTCCAAAGC.............................................................................................................................................................................................................................................................................................2511.00100000010000000000
...............................................................................TTTCCAAAGCC-TTTAAGTACCGA-TA............................................................................................................................................................................................................................................................................2511.00100000010000000000
.....................GTTT-------GTA----GTCGCGA-----------------------------AACATT.....................................................................................................................................................................................................................................................................................................2011.00100000000001000000
..........TACCTCGAATTGTTT-------GTA----GTCGCGA-----------------------------A..........................................................................................................................................................................................................................................................................................................2611.00100000010000000000
...........................................................................................................................................GTAAA--------ATTGTGATGTGTTTAAA-CTT.........................................................................................................................................................................................................2511.00101000000000000000
..........TACCTCGAATTGTTT-------GTA----GTC............................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
...............CGAATTGTTT-------GTA----GTCGCGA-----------------------------AACA.......................................................................................................................................................................................................................................................................................................2411.00100010000000000000
...........................................................................................................................................................................................................................................................................................................ATAC---TCGAAGGG------TCAACGAAAC-TG--TT.....................................2611.00100000010000000000
...............................................................................................................................................A--------ATTGTGATGTGTTTAAA-CTTAGA-.....................................................................................................................................................................................................2411.00100000010000000000
....................TGTTT-------GTA----GTCGCGA-----------------------------AACA.......................................................................................................................................................................................................................................................................................................1911.00100000000001000000
......................TTT-------GTA----GTCGCGA-----------------------------AACATTTCCAAAGC.............................................................................................................................................................................................................................................................................................2711.00100000010000000000
.................................................................................................................................................................TGTTTAAA-CTTAGA-TA------------CA---..................................................................................................................................................................................1811.00100000100000000000
...................................................................................................................................................................................................................................TACTAACT--AACCAACGCTGAA-TGCAA-GC...................................................................................................................2811.00100000001000000000
..........TACCTCGAATTGTTT-------GTA----GTCGCGA-----------------------------AA.........................................................................................................................................................................................................................................................................................................2711.00100000010000000000
.................................................................................................TACCGA-TATCGTGCTCGCTACTAA---T........................................................................................................................................................................................................................................................2511.00100000010000000000
.................................................................................................TACCGA-TATCGTGCTCGCT.................................................................................................................................................................................................................................................................1911.00100000000001000000
..............................................................................................................................................................................................................................................................................TGAAAGTT----GTT---TTCCAGCTCGAATAC---....................................................................2611.00100000000001000000
..........................................................................................................................................TGTAAA--------ATTGTGATGTGTTTAAA-CTTAGA-.....................................................................................................................................................................................................2911.00100000001000000000
..........................................................................................................TCGTGCTCGCTACTAA---TTGCTT-----AATG..........................................................................................................................................................................................................................................2611.00100000000001000000
............................................................................................TTAAGTACCGA-TATCGTGCTCGCTAC...............................................................................................................................................................................................................................................................2611.00100000000001000000
........................................................................................................................................................ATTGTGATGTGTTTAAA-CTTAGA-TA------------CA---..................................................................................................................................................................................2711.00100000010000000000
.................................................................................................TACCGA-TATCGTGCTCGCTACTAA---.........................................................................................................................................................................................................................................................2411.00100000010000000000
.....................................................................................................................................................................TAAA-CTTAGA-TA------------CA---AAATGTGTTGC.......................................................................................................................................................................2511.00100000100000000000
.......................................................................................................................TAA---TTGCTT-----AATGTAAA--------ATTGTGATG.....................................................................................................................................................................................................................2611.00100000000001000000
.................................................................................................TACCGA-TATCGTGCTCGCTAC...............................................................................................................................................................................................................................................................2111.00100001000000000000
.............................................................................CATTTCCAAAGCC-TTTAAGTACCGA-..............................................................................................................................................................................................................................................................................2511.00100000010000000000
..........................................................................................................................................................TGTGATGTGTTTAAA-CTTAGA-TA------------CA---AAAA..............................................................................................................................................................................2911.00100000010000000000
............................................................................................................................................................................................................................................................................................................TAC---TCGAAGGG------TCAACGAAAC-TG--T......................................2411.00100000010000000000
.................................................................................................................................................................................TA------------CA---AAATGTGTTGCA......................................................................................................................................................................1640.25100000010000000000
droSec2
TACA-AAATGTACCTCGAATTGTTT-------GTA----GTCGCGA-----------------------------AACATTTCCAAAGCC-TTTAAGTACCGA-TATCGTGCTCGCTACTAA---TTCCTT-----AATGTAAA--------ATTGTGATGTGTTTAAA-CTTAGA-TA------------CA---AAATGTGTTGCAAA-TATA------TTTCTGTACTAACT--AACCAACGCTGAA-TGCAA-GCTCTTCTGAATTTGAAAGTT----GTT---TTCCAGCTCGAATAC---TCGAAGGG------TGAACGAAAC-TG--TTAACGACAGTA------------------CAATAAAAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
TACA-AAATGTACCTCGAATTGTTT-------GTA----GT.............................................................................................................................................................................................................................................................................................................................................2912.0022000
..............TCGAATTGTTT-------GTA----GTCGCGA-----------------------------AACATTT....................................................................................................................................................................................................................................................................................................2811.0011000
.......................................................................................................................................................................................................................................................................CTGAATTTGAAAGTT----GTT---TTC...................................................................................2111.0011000
............................................................................................TTAAGTACCGA-TATCGTGCTCGCTAC...............................................................................................................................................................................................................................................................2611.0011000
........................T-------GTA----GTCGCGA-----------------------------AACATTTCCAAAGC.............................................................................................................................................................................................................................................................................................2511.0011000
...........................................................................................................................................GTAAA--------ATTGTGATGTGTTTA...............................................................................................................................................................................................................2011.0010100
.......ATGTACCTCGAATTGTTT-------GT....................................................................................................................................................................................................................................................................................................................................................2011.0010010
...................TTGTTT-------GTA----GTCGCGA-----------------------------AACATTTCCAAAG..............................................................................................................................................................................................................................................................................................2911.0010100
............................................................................................................................................................................................................TGCAAA-TATA------TTTCTGTACTAACT--AACC.....................................................................................................................................2811.0011000
...............................................................................................................................................................................................................................TCTGTACTAACT--AACCAACGCTGA.............................................................................................................................2411.0011000
........................................................................................................................................AATGTAAA--------ATTGTGATGTGT..................................................................................................................................................................................................................2011.0010010
.................AATTGTTT-------GTA----GTCGCGA-----------------------------AACATT.....................................................................................................................................................................................................................................................................................................2411.0011000
..........TACCTCGAATTGTTT-------GTA----GTCGC..........................................................................................................................................................................................................................................................................................................................................2311.0011000
......................................................................................AGCC-TTTAAGTACCGA-TATCGTGCT.....................................................................................................................................................................................................................................................................2511.0011000
......................................................................................................A-TATCGTGCTCGCTACTAA---TT.......................................................................................................................................................................................................................................................2111.0010100
.......................TT-------GTA----GTCGCGA-----------------------------AACATTTCCAAAGCC-TT.........................................................................................................................................................................................................................................................................................2911.0011000
....................................................................................................................................................................................................................................................................................................AGCTCGAATAC---TCGAAGGG------......................................................1911.0011000
........TGTACCTCGAATTGTTT-------GTA----GTCGCGA-----------------------------...........................................................................................................................................................................................................................................................................................................2711.0011000
...........................................................................................................................................GTAAA--------ATTGTGATGTGTTTAA..............................................................................................................................................................................................................2111.0010010
...................TTGTTT-------GTA----GTCGCGA-----------------------------AACATTT....................................................................................................................................................................................................................................................................................................2311.0011000
dm3
TACA-AAATGTACCTCGAATTATTT-------GTA----GTCGCGA-----------------------------AACATTTCCAAAGCC-TTCAAGTACCGA-TATCGTGCTCGCTACTAA---TTGCTT-----AATGTAAA--------ATTGTGATGTGTTTAAA-CTTAGA-TA------------CA---AAATGTCTTGCAAA-TATA------TTTCTGTACTAACT--AACTACCGCTGAA-TGCAA-GCTTTTTTGAATTTGAAAGTG----GTT---TTCCAGCTCGATTCC---TCGAAGGG------TCAACGAAAC-TG--TTAACGACAGTA------------------TAATAAAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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.........................................................................................C-TTCAAGTACCGA-TATCGTGCTCGC..................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..........TACCTCGAATTATTT-------GTA----GTCGCGA-----------------------------AAC........................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TTGCAAA-TATA------TTTCTGTACTAACT--.........................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................GA-TA------------CA---AAATGTCTTGCAAA-TATA------TT.......................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TACA-AAATGTACCTCGAATTATTT-------GTA----G..............................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................AATGTAAA--------ATTGTGATGTGTT.................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...................TTATTT-------GTA----GTCGCGA-----------------------------AACAT......................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AATGTACCTCGAATTATTT-------......................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TCGATTCC---TCGAAGGG------TCAACGAAAC-TG--T......................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................CTCGCTACTAA---TTGCTT-----AATG..........................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................A---TTGCTT-----AATGTAAA--------ATTGTGATGTGT..................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................CGA-TATCGTGCTCGCTACTA.............................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................TGATGTGTTTAAA-CTTAGA-TA------------CA---AAATG.............................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TGCTCGCTACTAA---TTGCTT-----AATGTAAA--------ATA...........................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TATTT-------GTA----GTCGCGA-----------------------------AACATTTCCAAAGC.............................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................A---TTGCTT-----AATGTAAA--------ATTGTGATG.....................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TTGCAAA-TATA------TTTCTGTACTAACT--AA.......................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TGTACCTCGAATTATTT-------GTA----GTCGC..........................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................CAAA-TATA------TTTCTGTACTAACT--AAC......................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TCGTGCTCGCTACTAA---TTGCTT-----AATGTA........................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................CAAGTACCGA-TATCGTGCTCGCTAC...............................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................TACCGA-TATCGTGCTCGCTACTAA---.........................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TCGCGA-----------------------------AACATTTCCAAAGCC-TT.........................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................ATTCC---TCGAAGGG------TCAACGAAAC-TG--T......................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TT---TTCCAGCTCGATTCC---TCGAAGGG------C.....................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................A---TTGCTT-----AATGTAAA--------ATTGTGATGTGTT.................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................................TAA---TTGCTT-----AATGTAAA--------ATTGTGATGTT...................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................GCTT-----AATGTAAA--------ATTGTGATGTGTTTAAA-C...........................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................TACTAACT--AACTACCGCT...............................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........ACCTCGAATTATTT-------GTA----GTCGCGA-----------------------------A..........................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................TGCAA-GCTTTTTTGAATTTGAAAGTG----GTT---T.....................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................C-TTCAAGTACCGA-TATCGTGCTCGCT.................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......ATGTACCTCGAATTATTT-------GTA----...............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................AATTTGAAAGTG----GTT---TTCCAG................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................TACTAA---TTGCTT-----AATGTAAA--------ATTGTGATG.....................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................TAA---TTGCTT-----AATGTAAA--------ATTGTGATGTC...................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
................................................................................................GTACCGA-TATCGTGCTCGCTAC...............................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TCCAAAGCC-TTCAAGTACCGA-TATCGTG.......................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........TACCTCGAATTATTT-------GTA----GT.............................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................ACTAACT--AACTACCGCTGAA-TGCAA-GCT..................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TT-------GTA----GTCGCGA-----------------------------AACATTTCCAAAG..............................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................TTAGA-TA------------CA---AAATGTCTTGCAA.....................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TTCC---TCGAAGGG------TCAACGAAAC-TG--TT.....................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................CAAAGCC-TTCAAGTACCGA-TATCGTGCTC....................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TTGCTT-----AATGTAAA--------ATTGTGA.......................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
....................TATTT-------GTA----GTCGCGA-----------------------------AAC........................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............CTCGAATTATTT-------GTA----GTCGCGA-----------------------------AACAT......................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TGTCTTGCAAA-TATA------TTTCTGTAC................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TGTACCTCGAATTATTT-------GTA----GTC............................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
..................................................................................CCAAAGCC-TTCAAGTACCGA-TATCG.........................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................TATCGTGCTCGCTACTAA---T........................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................CGCTACTAA---TTGCTT-----AATGTAAA--------ATTGTGA.......................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AATTATTT-------GTA----GTCGCGA-----------------------------AACATTTCCAAA...............................................................................................................................................................................................................................................................................................3011.0010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TT---TTCCAGCTCGATTCC---TCGAAGGG------......................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................TTTTTGAATTTGAAAGTG----GTT---TTCCAGC...............................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................TGCTT-----AATGTAAA--------ATTGTGATGTG...................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
TACA-AAATGTACCTCGAATTATTT-------GTA----GTC............................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................CCAGCTCGATTCC---TCGAAGGG------TCAACG................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................TA------TTTCTGTACTAACT--AACTACCGCTGA.............................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................CTTAGA-TA------------CA---AAATGTCTTGCAAA-TATA------.........................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................TTTCCAAAGCC-TTCAAGTACCGA-..............................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TATTT-------GTA----GTCGCGA-----------------------------AACATT.....................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................TGCAA-GCTTTTTTGAATTTGAAAGT.................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................ACTACCGCTGAA-TGCAA-GCTTTTC..............................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................TA------------CA---AAATGTCTTGCAAA-TATA------TTTC.....................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TGCTT-----AATGTAAA--------ATTGTGATGT....................................................................................................................................................................................................................2311.0010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................GCTACTAA---TTGCTT-----AATGTAAA--------AT............................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CCTCGAATTATTT-------GTA----GTCGCGA-----------------------------AACATT.....................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................TGTGTTTAAA-CTTAGA-TA------------CA---AAATGTCT..........................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AATGTACCTCGAATTATTT-------GTA----GTC............................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................AGCC-TTCAAGTACCGA-TATCG.........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
...........................................................................AACATTTCCAAAGCC-TTCAAGTAC..................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................GA-TATCGTGCTCGCTACTAA---TTGC.....................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........ACCTCGAATTATTT-------GTA----GTCGCGA-----------------------------AAC........................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TACA-AAATGTACCTCGAATTGTTT-------GTA----GTCGTGT-----------------------------AACATTTCCA-AGCC-TTTAAGTACCGA-TACCGTGCTCGCTACTAA---TTGCTT-----AATGTAAA--------ATTGTGATTTGTTTAAA-CTTAGA-TA------------CT---AA-AGTGTTGCAAA-TATA------TTTCTGTACTAACTAT--CCTCCGCTGTA-TGCAA-GCGTTTCTGAATTCGAAAGTT----TTT---TTCCAGCTCGATCGC---TCAAAGGG------TCAACAAAAC-TG--TTAATGACAGCA------------------GATTAAAAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................T-------GTA----GTCGTGT-----------------------------AACATTTCCA-AGCC-TT.........................................................................................................................................................................................................................................................................................2711.0011000000
TACA-AAATGTACCTCGAATTGTTT-------G.....................................................................................................................................................................................................................................................................................................................................................2511.0011000000
..........TACCTCGAATTGTTT-------GTA----GTCGTG.........................................................................................................................................................................................................................................................................................................................................2411.0011000000
droYak3
TACA-AAATGTACCTCGAATTGTTT-------GTA----GTCGTGT-----------------------------AACATTCTCAAAGCC-TTTAAGTACCGA-TACCGTGCTCGCTACTAA---TTGCTT-----ACTGTACA--------ATTGTGATTTGTTTAAT-CTTAGA-TA------------CA---AA-AGTGCTGCAAA-TATA------TTTCTGTACTAAAA--CACCTCTGCTGAA-TACAA-GCTTTTCTGAATTTAAAAGTT----GTT---TTCCAGGTCGAACGC---TCAAAGGG------TCAAC---------------GACAGCT------------------CAATAAAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................AAGTACCGA-TACCGTGCTCGCTAC...............................................................................................................................................................................................................................................................2411.00101000000000
............................................................................................TTAAGTACCGA-TACCGTGCTCGCTAC...............................................................................................................................................................................................................................................................2611.00101000000000
............................................................................................................................................................................TAGA-TA------------CA---AA-AGTGCTGCAAA-TATA------TT.......................................................................................................................................................2711.00101000000000
..................................................................................................................................................................................................................................................................CTTTTCTGAATTTAAAAGTT----GTT---......................................................................................2311.00101000000000
...........................................................................AACATTCTCAAAGCC-TTTAAGTACCGA-..............................................................................................................................................................................................................................................................................2711.00101000000000
........TGTACCTCGAATTGTTT-------GTA----GTCG...........................................................................................................................................................................................................................................................................................................................................2411.00101000000000
...............................................................................TTCTCAAAGCC-TTTAAGTACCGA-TACCG.........................................................................................................................................................................................................................................................................2811.00101000000000
droEug1
TACA-ATATGTACCTCGAATTTTTC-------GTA----GTCGCGA-----------------------------ATCATTTCCAAAGCC-TTTAAGTATCGA-TATCGTGCTCGCTACTAA---TTGCTT-----AATGTAAA--------CTTGTGATTTGTTTAAA-CTTAGA-TA------------CA---AACTGTGTTGCAAA-TATA------TTTCTATACTAACTATAACCTACGATGCA-TGCTA-GCTTTTCTTAATTTGAAAGTT----ATT---TTCCAGACCAACCGC---TCATGCGG------TCAACGAAGC-CG--TTAACGACAG---------------------AAGAAAAGSizeHit CountTotal NormTotal
No Reads
droBia1
TACA-ATATGTACCTCGAATTGTTT-------GTA----GTCGCGA-----------------------------AACATTTCCAAAGCC-TTTAAGTACCGA-TATCGTGCTCGCTACTAA---TTGCTT-----AATGTAAA--------CTTGTGATTTGTTTAAT-CTTAGA-TA------------CA---AAATGTGTTGCAAA-TATA------TTTCTATACTAACTGTAACTCATGCTCAA-TGCAA-GCTTTTCTTAATTTGAAAGTT----ATT---TTCCAGCTCAATCGC---CTGTAGGG------CCAACGAATC-CG--CTATCGACAGCG------------------CAATAAAAASizeHit CountTotal NormTotal
No Reads
droTak1
TACA-ATATGTACCTCGAATTGTTT-------GTA----GTCGCGA-----------------------------AACATTTCCAAAGCC-TTTAAGTACCGA-TATCGTGCTCGCTACTAA---TTGCTT-----ATTGTAAA--------CTTGTGATTTGTTTAAT-CTA------------------------------------------------------ATCTAACTGTAACCTCCGCTGAA-TGCAAGGCTCTTCTTAATTTGAAAGTT----ACT---TTCCAGCGCAATCGCTTCTTGCAGGG------TCAACGAAAC-CG--TTAACGACAGCT------------------CAGAAAAATSizeHit CountTotal NormTotal
No Reads
droEle1
TACA-ATATGTACCTCGAATTGTTT-------GTA----GTCGCGA-----------------------------AACATTTCCAAAGGC-TTTAAGTACCGA-TAATGTGCTCGCTACTAA---TTGCTT-----AATGTAAA--------CTTGTGATTTGTTAAAA-CTTAAA-TG------------TA---AAATGTGTTGCAAA-TATA------TTTCTATACTAACTTTAACCTGCGCTGAA-TGCGA-GCTTTTCCTAATTTGAAAGTT----ATT---TTCCAGCTCAATCGC---TCATGGGG------TCAACGAAAC-CG--TAAACGACAACA------------------CACAAAAAASizeHit CountTotal NormTotal
No Reads
droRho1
TATA-ATATGTACCTCGAATTGTTT-------GTT----TTCGCGA-----------------------------AACATTTCCAAAGCC-GTGAAGTACCGA-TGGTGTGCTAGCTACTAG---TTGCTT-----AATGTAAA--------CTTGTGATTTGTTTAAA-CTTAAA-TA------------CA---AAATGTGTTGCAAA-TATA------TTTCTATACTAACTGTAC-----GC-----TGCAA-GCTTTTCTTTATTTGAACATT-----TT---TTCCAGCTCAATCGC---TCGCAAGG------TCAACGAAAC-CG--TCAGTGACAGCA------------------GAATAAAAASizeHit CountTotal NormTotal
No Reads
droFic1
TAAAAAAATGTACCTCGAATTGTTT-------GTA----GTCGCGA-----------------------------AACATTTCCAAAGCC-TTTTAGTACCGA-TTTTGTGCTCGCTACTAA---TTGCTT-----AATGTAAAT-------TTTGTGATTTGTTTTAA-CATAGA-TA------------AA---AAATGTGTTGCAAA-TATA------TTTCTATACTAACTGTAAGCCACGTTGAC-TGCAA-GCTTTTCTTATTTTGAAAGTT----ACT---TTCCAGCTCGATCAC---CGGCGGGG------TCAACGAAAC-CG--TTAACGACAGCA------------------GAGAAAAATSizeHit CountTotal NormTotal
No Reads
droKik1
TACA-ATGTGTACCTCGAATTGTTG-------GTA----GTTGCAAA-----AA---------------------AACACTTT-GAAGCT-GTAAAGTACCGACTTTCTCGCTCGCTACTAA---TTGCTT-----AATGTAAAC-------TTTGTGATTTGTTTAAG-CTTAGATTAC-----------CA--GAAATGTGTTGCAAA-TATAAA----TCTTAATACTAACTGTAAACGGTGCTGTCTTGAAA-GATTTTCTTAATATGCTAGTT----TTC---TTCCAGCTTACCC------------G------TCAACGAATCACGAATTAACGACATCCCAGATGCA----------AAGGAAAAASizeHit CountTotal NormTotal
No Reads
droAna3
TGCA-ATATGTACCTCGAATTA----------GAA----GCTGCTG-----------------------------GTAACTTTGAAAG------------CGA-TTTAGAGCTCACTACTAA---TTTCTT-----AATGTGAATTTGTAAATGTGTGATTTGTCTAAA-TTAGGC-TA-------------A---CAATATGTTCCAAAATATA------C-TAAATACTAACTGTATGGC-GGATGCT-TTTGG-ATTTCTTTCAATCTTGATC------TTA---TTCTAGCTCAATCAT---GGCAAGGG------TCAACGAAAC-CA--CTAACGACACCACAGATGCTCGAGGAAAACCTGTAAACCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................ATGTGAATTTGTAAATGTGTG........................................................................................................................................................................................................................2112.002000002
.................................................................................TTGAAAG------------CGA-TTTAGAGCTCACTACC..............................................................................................................................................................................................................................................................2611.001010000
.............................................G-----------------------------GTAACTTTGAAAG------------CGA-TTTAGAGCT.....................................................................................................................................................................................................................................................................2611.001010000
...........................................................................................................AGAGCTCACTACTAA---TTTCTT-----..............................................................................................................................................................................................................................................2111.001100000
.................................................................................TTGAAAG------------CGA-TTTAGAGCTCACTACT..............................................................................................................................................................................................................................................................2611.001000010
.....ATATGTACCTCGAATTA----------GAA----GCT............................................................................................................................................................................................................................................................................................................................................2311.001000001
.........................................................................................................................................................................................................................................................................................................AATCAT---GGCAAGGG------TCAACG................................................2011.001100000
.....................A----------GAA----GCTGCTG-----------------------------GTAACTTTG..................................................................................................................................................................................................................................................................................................2011.001100000
droBip1
TGCA-ATATGTACCTCGAATTA----------GAA----GCTGCTG-----------------------------GCCATTTTGAAAGCG-ATTTAG----------AGAGCTAACTAATGA---TTTCTT-----AATGTAACTTTGTAAATGTGTGATTTGTTTTAA-TTAGTA-TAA-----------CA---AAATATGTTGCAAAATATA------C-TAAATACTAACTGTATACC-CGATGCT-TTTGG-A----TTATAATCTTAATA------TTA---TTCTAGCTCTATTAT---CCAAAGGG------TCAACGACAC-CA--CAGATGCTCGAG------------AAAAACCTGTAAAATSizeHit CountTotal NormTotal
No Reads
dp5
TACA-ATATGTACCTCGAATCGAACTTTTTCTGTATATAGT---AAGTCTTTAAAAGTCTTTAAAGCGCCTTGTTACCATTTCCGTAGCTGATTATGTATCGA-TTTATTGCTCGCTACTAA---TTGCTT-----ACAGTAAC--------CATGTGATTTGTTTAAG-CTTTCA--A------------CAAACCAATTTGTTGCAAA-AATAAATTCCTTTGTGTACTAACAATAAATC-TGTTG----CCAA-GCACTAACTAATCTCAGAGGT-C--G-TTTCCCCCAGCTCAAGCG-------------------AAACGAACC-C----------------------------------TATCCGAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................TATTGCTCGCTACTAA---TTGCTT-----ACAG..........................................................................................................................................................................................................................................2611.0010100000000
........................................................................................................TTTATTGCTCGCTACTAA---TTGCTT-----ACAG..........................................................................................................................................................................................................................................2811.0010100000000
....................................................................................................................................................................................................................................................................................................AGCTCAAGCG-------------------AAACGAACC-C----------------------------------T.......2111.0010100000000
.........................................................................................................TTATTGCTCGCTACTAA---TTGCT....................................................................................................................................................................................................................................................2211.0010010000000
droPer2
TACA-ATATGTACCTCGAATCGAACTTTTTCTGTATATAAT---AAG-----AAAAGTCTTTGAAGCGCCTTGTTACCATTTCTGTAGCTGATTATGTATCGA-TTTATTGCTCGCTACTAA---TTGCTT-----ACAGTAAC--------CATGTGATTTGTTTAAG-CTTTCA--A------------CAAATTAATTTGTTGCAAA-AATAAATTCCTTTGTGTACTAACAATAAATC-TGTTG----CCAA-GCCCTAACTAATCTCAGAGGT-C--G-TTTCCCCCAGCCAAAGCG-------------------AAACGAAC--------ACTTTCCGAA------------------CGATCATAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................ACCATTTCTGTAGCTGAT.........................................................................................................................................................................................................................................................................................1813.003300000
.....ATATGTACCTCGAATCGAAC.............................................................................................................................................................................................................................................................................................................................................................2012.002200000
..........................................................................TACCATTTCTGTAGCTGATT........................................................................................................................................................................................................................................................................................2011.001100000
........................................................................................................................................................CATGTGATTTGTTTAAG-C...........................................................................................................................................................................................................1811.001100000
..............................................G-----AAAAGTCTTTGAAGCGCCT...............................................................................................................................................................................................................................................................................................................2011.001010000
.....................................................AAAGTCTTTGAAGCGCCTTGTTACCA.......................................................................................................................................................................................................................................................................................................2611.001010000
........................................T---AAG-----AAAAGTCTTTGAAGCGCCTTGT............................................................................................................................................................................................................................................................................................................2611.001010000
droWil2
TACG-AAT-------------------------------------------------------------------------------------------------TATGCGCTCGCTACTAATAATTACTAAAAGAAATGTAAA--------CTTGTGATTTGTCTATGTCGTAGATTATAAAGAAAAGAAAGAAAAAAATTGTTGCAAATAATAAA----CGTCCAAACTAATCATAA-----AATGCT-TTCAA-A--TTTC-TAAATGGAAAGTGTCTCTAT---TCCCAGCTCTCA--G----------TTGAATGCTGAC------------AAAGCCCTTA------------------CAACCAAGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droMoj3
AACG-AAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--AAA--AAGAATG------------------CAATAAAAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads

Generated: 05/17/2015 at 04:23 PM