ID:

dsi_24912

 Coordinate:

2r:6818496-6818645 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.8 -19.5

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACAAATCAAATAGAGGTCTACGCAGACTTGGGCTGTCGTAAAAATGCAAGGTGTGTGGAACGAAAAAACTGTTTATGTAGATAATTAATAAAATTTACACATGGGGTTTTGAAAGTCTAGTTGTTAAGGAAGGTTTTTTAACCGGCCGTCGCTCGCCCGTCGATCGAGTTGCGGTTCAATCGTCGTTGGAGCCAGACGTGTCCGAAGTGTCAAAAATATTTGCCGAGATTTTCCGAGAACTCAGCGGGTT
***************************************************************************************************************................((..............((((((.(((((.........))))).))))))...............))********************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 O001
Testis
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
.............................................................................................................................................................................................................................GCCGAGATTTTCCGAGAACTC........ 21 0 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................GGTTCAATCGTCGTTGGAGCC......................................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TCAATCGTCGTTGGAGCCAGA...................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TTCAATCGTCGTTGGAGCCAGAT..................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................GTTCAATCGTCGTTGGAGCCA........................................................ 21 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................CCGAGATTTTCCGAGAACTCA....... 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................CGGTTCAATCGTCGTTGGAGC.......................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GTTGGAGCCAGACGTGTCC............................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACATTTGCCGAGATTTTCCGAGAACT......... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................CGTCGATCGAGTTGC.............................................................................. 15 0 2 1.00 2 0 0 0 0 0 2 0 0 0 0 0
..........................................................................................................................................................................................TGGAGCCAGACGTGTCCGAAG........................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TGCCGAGATTTTCCGAGAACTC........ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................AAAGTCTAGTTGTTAAGG......................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......AAATAGAGGTCTACGCAGACT.............................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ATTTGCCGAGATTTTCCGAGAACTCAGCG.... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ATTTGCCGAGATTTTCCGAGAACTC........ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CCGAGATTTTCCGAGAACTC........ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TTTGCCGAGATTTTCCGAGAACTC........ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................GGGTTTTGAAAGTCTAGTTGT.............................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................GTTCAATCGTCGTTGGAGCCAGACGT................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GCCCGTCGATCGAGTTGC.............................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................CACATGGGGTTTTGAAAGTCTAGTTG............................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................TTCAATCGTCGTTGGAGCCAGA...................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................AATGCAAGGTGTGTGGAAC............................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................ATAAAGATTACACATGGGGA............................................................................................................................................... 20 3 11 0.55 6 0 0 0 0 0 0 0 6 0 0 0
.....................................................................................................................................................................................................GTGTCCGAAGTGTCAAAG................................... 18 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................TGGGGTAGTGAAAGTCTA................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0
.......GAATAGAGGTCTAGACAGA................................................................................................................................................................................................................................ 19 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................AGCTAGACGTGTCAGAA............................................ 17 2 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................AGTCTAGTTGGTTAGGA........................................................................................................................ 17 2 14 0.14 2 0 0 0 0 0 0 0 1 0 1 0
........................................................................................................................................................................................................TCCGAAATGTCAAAAA.................................. 16 1 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0
...............................................................AAAATCTGTTTATGTGGAT........................................................................................................................................................................ 19 2 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................AGGTGTCGGAAGTGTGAAAAA.................................. 21 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................GGGGTTCTGGAAGACTAGT................................................................................................................................. 19 3 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................TTATACCCGGCCGTCG................................................................................................... 16 2 12 0.08 1 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................ACGTGTCGGAAGTGTGA...................................... 17 2 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................GAAGCTAGACGTGTCAGAA............................................ 19 3 15 0.07 1 0 0 0 0 0 0 0 0 0 1 0
...........................TTGGGCTGCCGTAAA................................................................................................................................................................................................................ 15 1 15 0.07 1 0 0 0 0 0 0 0 1 0 0 0
...........................TTGGACCGTCGTAAAAA.............................................................................................................................................................................................................. 17 2 16 0.06 1 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................CCGGCCGTCGCTGGC.............................................................................................. 15 1 16 0.06 1 0 0 0 0 0 0 0 1 0 0 0
..........................CTTGGACCGTCGTAAAAAC............................................................................................................................................................................................................. 19 3 16 0.06 1 0 0 0 0 0 1 0 0 0 0 0
........................TACTTGGGCCATCGTAAAAA.............................................................................................................................................................................................................. 20 3 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................GGTTCAATGGTTGTTAGAG........................................................... 19 3 19 0.05 1 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................CAGGCGGTTTTGTAAGTCT.................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
........................................................GGAACGAAAAGACTCT.................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.................................................AGTGTGTGGAACGTAAA........................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

TGTTTAGTTTATCTCCAGATGCGTCTGAACCCGACAGCATTTTTACGTTCCACACACCTTGCTTTTTTGACAAATACATCTATTAATTATTTTAAATGTGTACCCCAAAACTTTCAGATCAACAATTCCTTCCAAAAAATTGGCCGGCAGCGAGCGGGCAGCTAGCTCAACGCCAAGTTAGCAGCAACCTCGGTCTGCACAGGCTTCACAGTTTTTATAAACGGCTCTAAAAGGCTCTTGAGTCGCCCAA
*********************************************************................((..............((((((.(((((.........))))).))))))...............))*************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
.............................................................................................................................................................................................TCGGTCTGCACAGGCTTCACA........................................ 21 0 1 8.00 8 8 0 0 0 0 0
...................................................................................................................................................................................................TGCACAGGCTTCACAGTTTTT.................................. 21 0 1 5.00 5 5 0 0 0 0 0
..........................................................................................................................................................................CGCCAAGTTAGCAGCAACCTC........................................................... 21 0 1 3.00 3 3 0 0 0 0 0
.................................................................................................................................................................................................................................TCTAAAAGGCTCTTGAGTCGC.... 21 0 1 3.00 3 3 0 0 0 0 0
..................................................................................................................................................................................................CTGCACAGGCTTCACAGTTTT................................... 21 0 1 2.00 2 2 0 0 0 0 0
.......................................................................................................................................................................................GCAACCTCGGTCTGCACAGGC.............................................. 21 0 1 2.00 2 2 0 0 0 0 0
............................................................................................................................................................................................CTCGGTCTGCACAGGCTTCAC......................................... 21 0 1 2.00 2 2 0 0 0 0 0
................................................................................................................................................................................................................................CTCTAAAAGGCTCTTGAGTCG..... 21 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................................AGGCTTCACAGTTTTTATAAA............................. 21 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................GTTAGCAGCAACCTCGGTCT...................................................... 20 0 1 1.00 1 1 0 0 0 0 0
...............................................TTCCACACACCTTGCTTTTTTGACA.................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................................................TTCGGTCTGCACAGGCTTCACA........................................ 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................CCAAGTTAGCAGCAACCTCGGT........................................................ 22 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................CGCACAGGCTTCACAGTTTTT.................................. 21 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................TCACAGTTTTTATAAACGGCT........................ 21 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................TAAAAGGCTCTTGAGTCG..... 18 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................GAGCTCAACGCCAAGTTAGCAGCAACC............................................................. 27 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................................GGCTTCACAGTTTTTATAAA............................. 20 0 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................................................................................TGTCTGCACAGGCTTCACA........................................ 19 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................TCTCGGTCTGCACAGGCTTCAC......................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................TAGCTCAACGCCAAGTTAGCAGCAACC............................................................. 27 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................CCTCGGTCTGCACAGGCTTC........................................... 20 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................CGGGCAGCTAGCTCAACGCCA........................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.....................CGTCTGAACCCGACAGCATTTTTA............................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0
..................................................................................................................................................................................................................GTTTTTATAAACGGCTCTAAA................... 21 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................TCGGTCTGCACAGGCTTCATA........................................ 21 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................TAAACGGCTCTAAAAGGC............... 18 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................GCGGTCTGCACAGGCTTC........................................... 18 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................TCAGATCAACAATTCCTTCCAAAAAAT.............................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................................................................................AGGCTTCACAGTTTTTAT................................ 18 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................CAACCTCGGTCTGCACAGGCTTCAC......................................... 25 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................CGGCTCTAAAAGGCTCTTG.......... 19 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................ACCTCGGTCTGCCCTAGCTT............................................ 20 3 4 0.25 1 0 0 1 0 0 0
.......CTTATCTCCAGATCTGTCT................................................................................................................................................................................................................................ 19 3 5 0.20 1 0 0 0 1 0 0
..........................................................................................................................................................................................ACCTCGGTCTGCCCTAGCT............................................. 19 3 9 0.11 1 0 0 0 0 1 0
.....................................................................................................................................AAAAAATTGGCCGGA...................................................................................................... 15 1 13 0.08 1 0 0 1 0 0 0
..........................................................................................................................................ATTGTCAGGCAGCGAG................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 1
.................................................................................................................................................................................................................AGTTTTTATAAGTGGCT........................ 17 2 20 0.05 1 0 0 1 0 0 0
...................................................................................................................................................CAGGCAGCGGGCAGATAGC.................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0
......................................................................................................................................AAAAACTGGCCGGCATCT.................................................................................................. 18 3 20 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:6818446-6818695 - dsi_24912 ACA-AATCAAATAGAGGTCTACGCAGACTT----GGGC--------------------------------------------------T-GTCGTAAAAATGCAAGGTGTGTGGAACGA----------------------------------AAAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGG-GGTT-----------------------------TTGAAAGTCTA----GTT--GTTAA-------GGAAGGTTTTTTAACCGGCCG--TC-GCTCGCCCGTCGATCGAGTTGCGGTTCAATCGTCGTTGGAGCCAGACGTGTC--------------CGAAGTGT--CAAAA---ATATTTG-------CCGA-----GAT--------------------TT-TCCGAGA--------------------------------------------------------------------------------------ACTCAGCGGGTT------
droSec2 scaffold_1:3658399-3658648 - ACA-AATCAAATAGAGGTCTACGCAGACTT----GGGC--------------------------------------------------T-GTCGTAAAAATGCAAGGTGTGTGGAACGA----------------------------------AAAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGG-GGTT-----------------------------TTGAAAGTCTA----GTT--GTTAA-------GGAAGGTTTTTTAACCGGCCG--TC-GCTCGCCCGTCGATCGAGTTGCGGTTCAATCGTCGTTGGAGCCAGACGTGTC--------------CGAAGTGT--CAAAA---ATATTTG-------CCGA-----GAT--------------------TT-TCCGAGA--------------------------------------------------------------------------------------ACTCAGCGGGTT------
dm3 chr2R:6042294-6042543 - ACA-AATCAAATAGAGGTCTACGCAGACTT----GGGC--------------------------------------------------T-GTCGTAAAAATGCAAGGTGTGTGGAACGA----------------------------------AAAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGG-GGTT-----------------------------TTGAAAGTCTA----GTT--GTTAA-------GGAAGGTTTTTTAACCGGCCG--TC-GCTCGCCCGTCGATCGAGTTGCGGTTCAATCGTCGTTGGAGCCAGACGTGTC--------------CGAAGTGT--CAAAA---ATATTTG-------CCGA-----GAT--------------------TT-TCCGAGA--------------------------------------------------------------------------------------ACTCAGCGTTGT------
droEre2 scaffold_4929:8326863-8327129 + ACA-AATCAAATAGAGGTCTACGCAGACTG--TTGGGC--------------------------------------------------T-GTCGTAAAAATGCAAGGTGTGTGGAACGA------------------AAAC--AAAAAAAA--CAAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGG-GGTT-----------------------------TTGAAAGTCTA----GTT--GTTAA-------GGAAGGTTTTTTAACCGGCCG--TC-GTTCGCCCGTCGATCGAGTTGCGGTTCAATCGTCGTTGGAGCCAGACGTGTC--------------CGAAGTGT--CAAAAAATATATTGG-------CCGA-----GAT--------------------TT-TCCGAGA--------------------------------------------------------------------------------------ACTCAGCGGGTT------
droYak3 2L:18675955-18676204 - ACA-AATCAAATAGAGGTCTACGCAGACTT----TTGC--------------------------------------------------T-GTCGTAAAAATGCAAGGTGTGTGGAACGA----------------------------------AAAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGA-GGTT-----------------------------TTCAAAGTCTA----GTT--GTTAA-------GGAAGGTTTTTTAACCGGCCA--TC-GCTCGCCCGTCGATCGAGTTGCGGTTCAATCGTCGTTGGAGCCAGACGTGTG--------------CGAAGTGT--CAAAA---ATATTTG-------CCGA-----GAT--------------------TT-TCCGATA--------------------------------------------------------------------------------------ACTCAGCGGGGT------
droEug1 scf7180000409209:138117-138388 + ATAAAATCAAATAGAGGTCTACGCAGACTT--T-ACGCTG-C----------------------------------------------T-ATCATAAAAATGCAAGGTGTGTGGATCGA----------ACAGACGAA--CGA--A----A--AAAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGG-GGTT-----------------------------TTGAAAGTCTA----GTT--GTTAA-------GGAAGGTTTTTTAACCGGCCG--ACAGCTCAGCCGACGATCGAGTTGCGGTCCAATCGTCGTTCGAGCCAGACGTGTC--------------CAAAGTGT--CAAAAAA-ATATTAG-------CCAA-----GTT--------------------TT-ACTGAGA--------------------------------------------------------------------------------------ACTCATTTGGGT------
droBia1 scf7180000301754:287910-288161 + ACAAAATCAAACAGAGGTCTACGCAGACTT----GAAG--------------------------------------------------C-GTCGTAAAAATGCAAGGTGTGTGGAGCGA----------------------------------AAAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGG-GGTT-----------------------------TTGAAAGTCTA----GTT--GTTAA-------GGAAGGTT-TTTAACCGGCCG--AC-GCTCAGCCGTCGATCGAGTTGCGGTTCAATCGTCGTTCGAGCCGGACGTGTC--------------CAAAGTGT--CAAAAAA-ATATTAG-------CCGA-----GAT--------------------TT-GCCGCGA--------------------------------------------------------------------------------------ACGCATACGGGT------
droTak1 scf7180000415363:187030-187280 + ATAAAATCAAATAGAGGTCTACGCAGACTT----GGGC--------------------------------------------------T-GTCGTAAAAATGCAAGGTGTGTGGAACGA----------------------------------AGAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGG-GGTT-----------------------------TTGAAAGTCTA----GTT--GTTAA-------GGAAGGTTTTTTAACCGGCCG--AC-GCTCAGCCGTCGATCGAGTTGCGGTTCAATCGTCGTCGGAGCCAGACGTGTC--------------CAAAGTGT--CAAAA---ATATTAG-------TTGA-----GAT--------------------TT-ACTGAGA--------------------------------------------------------------------------------------ACTCATACGGGT------
droEle1 scf7180000491258:241611-241861 - ATAAAACCAAATAGAGGTCTACGCAGACTT----GGGG--------------------------------------------------T-GTCGTAAAAATGCAAGGTGTGTGGAACGA----------------------------------AAAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGG-GGTT-----------------------------TTGAAAGTCTA----GTT--GTTAA-------GGAAGGTTTTTTAACCGGCCG--AC-GATCAGCCGTCGATTGAGTTGCTATTGAATCGCCGTCGAAGCTAGACGTGTC--------------CAAAGTGT--CAAAA---ATATTAG-------CCGA-----GAG--------------------AT-TCCGAGA--------------------------------------------------------------------------------------ACCCACCGGGGT------
droRho1 scf7180000774573:11677-11927 + ACAAAATCAAATAGAGGTCTATGCAGACTT----GGGG--------------------------------------------------T-GTCGTAAAATTGCAAGGTGTGTGGAACGA----------------------------------AAAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGG-GGTT-----------------------------TTGAAAGTCTA----GTT--GTTAA-------GGAAGGTTTTTTAACCGGCCG--AC-GCTCAGCCGTCGATCGAGTTGCGATTGAACCGCCGTCGGAGCCAGACGTGTC--------------CAAAGTGT--CAAAA---ATATTTG-------CCGA-----GAT--------------------TT-TCCGAGA--------------------------------------------------------------------------------------ATTCACTGGGGT------
droFic1 scf7180000454066:1682725-1682982 + ACAAAATCAAATAGAGGTCTACGCAGACTT----GGGC--------------------------------------------------C-GTCGTAAAAATGCAAGGTGTGTGAAACGA------------------A--AGA--A----A--AAAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGG-GGTT-----------------------------TTGAAAGTCTA----GTT--GTTAA-------GGAAGGTTTTTTAACCGGCCA--AC-GATCAGCCGACGATCGAGTTGCGGTTCAATCGCCGTCGGAGCCAGACGTGTC--------------CAAAGTGT--CAAGAG--ATATTAG-------CCGA-----GAT--------------------TT-TCCGAGA--------------------------------------------------------------------------------------ACTCGTTGGGTT------
droKik1 scf7180000302817:371330-371599 - ATAAAATCAAATAGAGGTCTAC-CAGACAACGATGGCT--------------------------------------------------T-GTCGTAAAATTGCAAGGTGTGTGGAACGA------------------A--GAA-AAAATAA--AAAAAGTGTTTATGTAGATAATTAATAA-AATTTACACATGGGGTTT-----------------------------TTGAAAGTCGA----GTT--GTTAG-------GGAAGGTTTTTTAACCGGGCA--AC-GTTTAGACGTCGATCGAGTTGCGGTTCAAGCGCCGTTCGAACCAGACGTGTC--------------CCAAGTGTGTCAGTAC--ATTTTAA-------CTGA-----GAT--------------------TTTTCCGAAA--------------------------------------------------------------------------------------GTTTACCGGGCT------
droAna3 scaffold_13266:4514439-4514691 - ATAAAATCAAATAGAGGTCTACGTAGACCT----AGCC--------------------------------------------------G-GCCATAAAAATGCAAGGTGTGTGGAACGA-----------------------------------AAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGAGGGTT-----------------------------TTGAAAGCCAGTAGACTT--GTTAG-------GGAAGGTTTTTTAACCGGCCA--CC-GCTTAACCAACGATCGAGTTGCGGTTCAAGCGCCGTTCCGACCAGACGTGTC--------------CAAAGCAT--CACAA---G--CTAT-------CCGA-----GAT--------------------TT-GTCGAGA--------------------------------------------------------------------------------------AATCAGTGTGCT------
droBip1 scf7180000395751:317612-317863 - -TAAAATCAAATAGAGGTCTGCGTAGACCT----AGTC--------------------------------------------------T-GCCATAAAAATGCAAGGTGTGTGGAACGA-----------------------------------AAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGAGGGTT-----------------------------TTGAAAGTCAGTAGACTT--GTTAG-------GGAAGGTTTTTTAACCGGCCA--CC-GCTTAACCAACGATCGAGTTGCGGTTCAAGCGCCGTTCCGACCAGACGTGTC--------------CAAAGTGT--CACAA---G--CTAT-------CCGG-----GAT--------------------TT-GTTGAGA--------------------------------------------------------------------------------------AATCAGTGTGCT------
dp5 3:6890401-6890657 - ATAAAATCAAATAAAGGTCTGCGTAGATCT----AGCC--------------------------------------------------TGGTCATAA-AATGCAAGGTGTGTGGAATA------------------------------------AAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGAGGGTT-----------------------------TTGGATGTCTC----GAT--GTTAA--GGAAGAGAAGGTTTTTTAACTGGGGA-CTC-ACTCAACCGTCGATCGAGTTGCGGATCGAGTGCCGTTGCGATCAGACGTGGC--------------GGGAGTGT--T---------TTTAGCAGCGTTTTGA-----GAG--------------------TG-ATCGAGA--------------------------------------------------------------------------------------GTGAAGTGGTGT------
droPer2 scaffold_2:7092399-7092645 - ATAAAATCAAATAAAGGTCTGCGTAGATCT----AGCC--------------------------------------------------TGGTCATAA-AATGCAAGGTGTGTGGAATA------------------------------------AAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGAGGGTT-----------------------------TTGGATGTCTC----GAT--GTTAA--GGAAGGGAAGGTTTTTTAACTGGGGA-CTC-ACTCAACCGTCGATCGAGTTGCGGATCGAGTGCCGTTGCGATCAGACGTGGC--------------GGGAGTGT--T---------TTTAA-------CAGC-----G-----------------------T-TTTGAGA--------------------------------------------------------------------------------------GTGAAGTGGTGT------
droWil2 scf2_1100000004382:42838-43206 + TCA-AATCAAATAAAGGTCTAC-CAACCCC----CCTCTGTCTAAGGAGGAGGGGCATAAGGAGGTGTAGAAGGAGCCTAGAAGAGGGG-GTCATAAAAATGCAAGGTGTGTGGAAAAA------------------A--C--AAA----A-AAAAATTTGTTTATGTAGATAATTAATAA-AATTTACACATGGAGGTTGGTTTTTATTTTATTTTTTA-TTTTTTTTTCGAAAGTCTA----GTTTGGTTGGAGAGGTGGGAAGGTT--TTAACTGGGCGATTT-GCTCAACCGTCGATCGAGTTGTGAATTGCTTGTCAAGTGGGCCGGACGTGTGTGTTCTCTATTG--CGAAA--T--CAAGATA-ATTTT-----------------------------ATTATTATTATAT-TAGTGGAAGTGAA------------------------------------GTG----------------------------------------GAATTTAATGGATC------
droVir3 scaffold_12875:15888471-15888798 - TCA-AATCAAATAAAGGTCTACATAGATAC----AGGC--------------------------------------------------G-ACCATAAAAATGCAAGGTGTGTAGAAAACAAAATATAAAACAGACAAA--AAA-AAAAAGG--CAAAACAGTTTATGTATATAATTAATAAAAATTTACACATGGAGGTT---------------------------TTTGGAAAGTCTA----TAA--GCG-G-------TGTGGG--TTTTAAACGCTCGAAAC-GCTCAACAGACGATCGAGTTGTGATTTGAACGCCAAACGCGACACACGTCGT-ACACCCCATTTACTGG-GCTC--T---------ATTATCAGCGTT---------------------------------------------------------------ACTT--------------------GTGTTTTGTGCTTGGTTAATTTGTTTGGTTTTTTAGTGC--AGTGATTAGGTTTTGAGG
droMoj3 scaffold_6496:7898456-7898761 + TCA-AATCAAATAAACG-------------------------------------------------------------------------ATCATAAAAATGCAAGGTGTGTAGAAAAA------------------A--A--AAA--TAGCGAAAAACAGTTTATGTAGATAATTAATAA-AATTTACACATGGAGGTT--------------------------TTTTGGAAAGTCTA-----TA--GCCAG-------GGAAGGTT--TTAAACGCTCGTAGC-GCTCAGCAAACGATCGAGTTGTGATTTGTACGGCAAACGCGACACACGTCCGTATACCCAATTT-CCGA-GCTC--T---------ATTATCAGCCGTAT-------------------------ATATAT-TACTAAAAATATATATATATATTTGTGTTACTTTTCGTAAAGTGTTGAAGTGTGTGTTTTGG------------------------------------GGCGGG--------
droGri2 scaffold_15245:12694312-12694581 - ATCAAATCAAATAAAGGTCTACGTAG----------GT--------------------------------------------------G-ACCATAAAAATGCAAGGTGTGTAGAAAAA----------------------------------ACACACTGCTTA------TAATTAACAA-AATATACACATAGAGGTT------------ATTTTTTTTTTGTTTTTTGGAAAGTCTA----TG---GCT-G-------AAAAGGTTT--TAACACTCG-GGCC-GCTTAACAGACGATCGAGTTGTGAACTGAACGCCAAACGCGACACACGTCGC--------------CAAAATAC--CG--------ATTAG-------CCAATTTGAGGGTTCATTTTTTTTTTAT----TT-TGCGATA--------------------------------------------------------------------------------------GTGCAGTGAAGT------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACA-AATCAAATAGAGGTCTACGCAGACTT----GGGC--------------------------------------------------T-GTCGTAAAAATGCAAGGTGTGTGGAACGA----------------------------------AAAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGG-GGTT-----------------------------TTGAAAGTCTA----GTT--GTTAA-------GGAAGGTTTTTTAACCGGCCG--TC-GCTCGCCCGTCGATCGAGTTGCGGTTCAATCGTCGTTGGAGCCAGACGTGTC--------------CGAAGTGT--CAAAA---ATATTTG-------CCGA-----GAT--------------------TT-TCCGAGA--------------------------------------------------------------------------------------ACTCAGCGGGTT------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................G-------CCGA-----GAT--------------------TT-TCCGAGA--------------------------------------------------------------------------------------ACTC..............2116.00606000000000000000
.....................................................................................................................................................................................................................................................................................................................GGTTCAATCGTCGTTGGAGCC.........................................................................................................................................................................................................2113.00303000000000000000
........................................................................................................................................................................................................................................................................................................................TCAATCGTCGTTGGAGCCAGA......................................................................................................................................................................................................2112.00202000000000000000
.......................................................................................................................................................................................................................................................................................................................TTCAATCGTCGTTGGAGCCAGAT.....................................................................................................................................................................................................2312.00202000000000000000
......................................................................................................................................................................................................................................................................................................................GTTCAATCGTCGTTGGAGCCA........................................................................................................................................................................................................2112.00211000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................CCGA-----GAT--------------------TT-TCCGAGA--------------------------------------------------------------------------------------ACTCA.............2112.00201010000000000000
....................................................................................................................................................................................................................................................................................................................CGGTTCAATCGTCGTTGGAGC..........................................................................................................................................................................................................2111.00101000000000000000
.................................................................................................................................................................................................................................................................................................................................GTTGGAGCCAGACGTGTC--------------C.................................................................................................................................................................................1911.00100001000000000000
......................................................................................................................................................................................................................................................................................................CGTCGATCGAGTTGC..............................................................................................................................................................................................................................1521.00200000020000000000
...................................................................................................................................................................................................................................................................................................................................TGGAGCCAGACGTGTC--------------CGAAG.............................................................................................................................................................................2111.00100010000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TG-------CCGA-----GAT--------------------TT-TCCGAGA--------------------------------------------------------------------------------------ACTC..............2211.00101000000000000000
........................................................................................................................................................................................................................................AAAGTCTA----GTT--GTTAA-------GG............................................................................................................................................................................................................................................................................1811.00100001000000000000
........AAATAGAGGTCTACGCAGACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................ATTTG-------CCGA-----GAT--------------------TT-TCCGAGA--------------------------------------------------------------------------------------ACTCAGCG..........2911.00100010000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................ATTTG-------CCGA-----GAT--------------------TT-TCCGAGA--------------------------------------------------------------------------------------ACTC..............2511.00101000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................CCGA-----GAT--------------------TT-TCCGAGA--------------------------------------------------------------------------------------ACTC..............2011.00101000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TTTG-------CCGA-----GAT--------------------TT-TCCGAGA--------------------------------------------------------------------------------------ACTC..............2411.00101000000000000000
..................................................................................................................................................................................................G-GGTT-----------------------------TTGAAAGTCTA----GTT--GT........................................................................................................................................................................................................................................................................................2111.00100010000000000000
......................................................................................................................................................................................................................................................................................................................GTTCAATCGTCGTTGGAGCCAGACGT...................................................................................................................................................................................................2611.00101000000000000000
...................................................................................................................................................................................................................................................................................................GCCCGTCGATCGAGTTGC..............................................................................................................................................................................................................................1811.00100001000000000000
............................................................................................................................................................................................CACATGG-GGTT-----------------------------TTGAAAGTCTA----GTT--G.........................................................................................................................................................................................................................................................................................2611.00100000000001000000
.......................................................................................................................................................................................................................................................................................................................TTCAATCGTCGTTGGAGCCAGA......................................................................................................................................................................................................2211.00101000000000000000
..................................................................................................AATGCAAGGTGTGTGGAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
..............................................................................................................................................................................................................................................................................................................................................GTGTC--------------CGAAGTGT--CAAAG---................................................................................................................................................................1830.33100000000001000000
droSec2
ACA-AATCAAATAGAGGTCTACGCAGACTT----GGGC--------------------------------------------------T-GTCGTAAAAATGCAAGGTGTGTGGAACGA----------------------------------AAAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGG-GGTT-----------------------------TTGAAAGTCTA----GTT--GTTAA-------GGAAGGTTTTTTAACCGGCCG--TC-GCTCGCCCGTCGATCGAGTTGCGGTTCAATCGTCGTTGGAGCCAGACGTGTC--------------CGAAGTGT--CAAAA---ATATTTG-------CCGA-----GAT--------------------TT-TCCGAGA--------------------------------------------------------------------------------------ACTCAGCGGGTT------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................................................................GTCGTTGGAGCCAGACGT...................................................................................................................................................................................................1811.0011000
..............................................................................................................................................................................................................................................................................................................GAGTTGCGGTTCAATCGTCGTTGGA............................................................................................................................................................................................................2511.0010100
........AAATAGAGGTCTACGCAGACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.......................................................................................................................................................................................................................................................................................................................TTCAATCGTCGTTGGAGCCAGA......................................................................................................................................................................................................2211.0010100
..........................................................................................................................................................................................................................................................................................................................................................................................................GAT--------------------TT-TCCGAGA--------------------------------------------------------------------------------------ACTCAGCGGGT.......2311.0010100
...................................................................................................................................................................................................................................................................................................................................TGGAGCCAGACGTGTC--------------CGAAGTGT--CAA.....................................................................................................................................................................2711.0010100
dm3
ACA-AATCAAATAGAGGTCTACGCAGACTT----GGGC--------------------------------------------------T-GTCGTAAAAATGCAAGGTGTGTGGAACGA----------------------------------AAAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGG-GGTT-----------------------------TTGAAAGTCTA----GTT--GTTAA-------GGAAGGTTTTTTAACCGGCCG--TC-GCTCGCCCGTCGATCGAGTTGCGGTTCAATCGTCGTTGGAGCCAGACGTGTC--------------CGAAGTGT--CAAAA---ATATTTG-------CCGA-----GAT--------------------TT-TCCGAGA--------------------------------------------------------------------------------------ACTCAGCGTTGT------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................................................................................................................................TGGAGCCAGACGTGTC--------------CG................................................................................................................................................................................1819.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................GCCAGACGTGTC--------------CGAAGTG...........................................................................................................................................................................1915.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000300000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................GAGCCAGACGTGTC--------------CGAAGTG...........................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................GAGTTGCGGTTCAATCGTC..................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000010000000000
..............................................................................................................................................................................................................................................................................................................GAGTTGCGGTTCAATCGTCGTTGG.............................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000110000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................GAGCCAGACGTGTC--------------CGAA..............................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................ATCGTCGTTGGAGCCAGACGTG..................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...........TAGAGGTCTACGCAGACTT----GGGC--------------------------------------------------T-GT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................AGACGTGTC--------------CGAAGTGT--C.......................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TAGAGGTCTACGCAGACTT----GGGC--------------------------------------------------T-.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................GAGTTGCGGTTCAATCGT...................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................................................................GTCGTAAAAATGCAAGGTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AGTTGCGGTTCAATCGTC..................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................GTTGGAGCCAGACGTGTC--------------CGAA..............................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..........................................................................................................................................................................................................................................................................GTTTTTTAACCGGCCG--TC-GCTC................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................CGGTTCAATCGTCGTTGGAGCCAGACG....................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TT-TCCGAGA--------------------------------------------------------------------------------------ACTCAGCGTT........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...................................................................................................................................................................................................................................................................................................................GCGGTTCAATCGTCGTTGG.............................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................GAGTTGCGGTTCAATCGTCGT................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................CGTCGTTGGAGCCAGACGTG..................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TACGCAGACTT----GGGC--------------------------------------------------T-G........................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................CGTCGTTGGAGCCAGACGT...................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
....................ACGCAGACTT----GGGC--------------------------------------------------T-GTCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................GGAGCCAGACGTGTC--------------CGAA..............................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................GCCAGACGTGTC--------------CGAAGTGT--CA......................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
................................................................................................................................................................................................................................................................................................................GTTGCGGTTCAATCGTCGTTGG.............................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................GAGCCAGACGTGTC--------------CGAAGTGT--........................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................GAGTTGCGGTTCAATCGTCGTTGGA............................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................................TCTA----GTT--GTTAA-------GGAAGGTT......................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................ATCGTCGTTGGAGCCAGACGT...................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................GCCAGACGTGTC--------------CGAAGT............................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................T-GTCGTAAAAATGCAAGGTGTGTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................................................................................CGTTGGAGCCAGACGTGTC--------------CGAAGTG...........................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................TCGTCGTTGGAGCCAGACG....................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................TT-----------------------------TTGAAAGTCTA----GTT--GTTAA-------GGAAGG........................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................CGCCCGTCGATCGAGTTGCG.............................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................GTTGGAGCCAGACGTGTC--------------CGAAGTG...........................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................GTT--GTTAA-------GGAAGGTTTTT...................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................ATCGTCGTTGGAGCCAGACGTGTC--------------C.................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................CGTGTC--------------CGAAGTGT--CAAAA---AT..............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................GAGTTGCGGTTCAATCGTCGTTGGAGC..........................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................GTCGTTGGAGCCAGACGT...................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................GTTGGAGCCAGACGTGTC--------------CGAAGTGT--........................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................TGAAAGTCTA----GTT--GTTAA-------GGA...........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TTGGAGCCAGACGTGTC--------------CGAA..............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................T-----------------------------TTGAAAGTCTA----GTT--GTTAA-------GGAAGGTT......................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................AT--------------------TT-TCCGAGA--------------------------------------------------------------------------------------ACTCAGCGT.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................TCGTCGTTGGAGCCAGACGTGTC--------------CGA...............................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................GCCAGACGTGTC--------------CGAAGTGT--CAA.....................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CTT----GGGC--------------------------------------------------T-GTCGTAAAAATGC............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
......TCAAATAGAGGTCTACGCAGACTT----GGGC--------------------------------------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ACA-AATCAAATAGAGGTCTACGCAGACTG--TTGGGC--------------------------------------------------T-GTCGTAAAAATGCAAGGTGTGTGGAACGA------------------AAAC--AAAAAAAA--CAAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGG-GGTT-----------------------------TTGAAAGTCTA----GTT--GTTAA-------GGAAGGTTTTTTAACCGGCCG--TC-GTTCGCCCGTCGATCGAGTTGCGGTTCAATCGTCGTTGGAGCCAGACGTGTC--------------CGAAGTGT--CAAAAAATATATTGG-------CCGA-----GAT--------------------TT-TCCGAGA--------------------------------------------------------------------------------------ACTCAGCGGGTT------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................AGCCAGACGTGTC--------------CGAAGTGT--C.......................................................................................................................................................................2211.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................ATATTGG-------CCGA-----GAT--------------------TT-TCCGAGA--------------------------------------------------------------------------------------ACT...............2611.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................TGG-------CCGA-----GAT--------------------TT-TCCGAGA--------------------------------------------------------------------------------------ACT...............2211.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................ATATTGG-------CCGA-----GAT--------------------TT-TCC............................................................................................................1920.5010000010
droYak3
ACA-AATCAAATAGAGGTCTACGCAGACTT----TTGC--------------------------------------------------T-GTCGTAAAAATGCAAGGTGTGTGGAACGA----------------------------------AAAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGA-GGTT-----------------------------TTCAAAGTCTA----GTT--GTTAA-------GGAAGGTTTTTTAACCGGCCA--TC-GCTCGCCCGTCGATCGAGTTGCGGTTCAATCGTCGTTGGAGCCAGACGTGTG--------------CGAAGTGT--CAAAA---ATATTTG-------CCGA-----GAT--------------------TT-TCCGATA--------------------------------------------------------------------------------------ACTCAGCGGGGT------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................................................GTTCAATCGTCGTTGGAGCC.........................................................................................................................................................................................................2011.00100000010000
................................................................................................................................................................................................................................................................................................................................CGTTGGAGCCAGACGTGTG--------------CGA...............................................................................................................................................................................2211.00100000010000
.........................................................................................................................................................................................................................................................................................................................CAATCGTCGTTGGAGCCAGACGTGTG--------------C.................................................................................................................................................................................2711.00100000010000
....................................................................................................................................................................................................................................................................................................................................GGAGCCAGACGTGTG--------------CGAAGTGT--CAAAA---A...............................................................................................................................................................2911.00100000010000
.......................................................................................................................................................................................................................................................................................................................................GCCAGACGTGTG--------------CGAAGTGT--CAAAA---ATA.............................................................................................................................................................2811.00100000010000
.......................................................................................................................................................................................................................................................................................................................................GCCAGACGTGTG--------------CGAAGTGT--........................................................................................................................................................................2011.00100000010000
droEug1
ATAAAATCAAATAGAGGTCTACGCAGACTT--T-ACGCTG-C----------------------------------------------T-ATCATAAAAATGCAAGGTGTGTGGATCGA----------ACAGACGAA--CGA--A----A--AAAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGG-GGTT-----------------------------TTGAAAGTCTA----GTT--GTTAA-------GGAAGGTTTTTTAACCGGCCG--ACAGCTCAGCCGACGATCGAGTTGCGGTCCAATCGTCGTTCGAGCCAGACGTGTC--------------CAAAGTGT--CAAAAAA-ATATTAG-------CCAA-----GTT--------------------TT-ACTGAGA--------------------------------------------------------------------------------------ACTCATTTGGGT------SizeHit CountTotal NormTotal
No Reads
droBia1
ACAAAATCAAACAGAGGTCTACGCAGACTT----GAAG--------------------------------------------------C-GTCGTAAAAATGCAAGGTGTGTGGAGCGA----------------------------------AAAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGG-GGTT-----------------------------TTGAAAGTCTA----GTT--GTTAA-------GGAAGGTT-TTTAACCGGCCG--AC-GCTCAGCCGTCGATCGAGTTGCGGTTCAATCGTCGTTCGAGCCGGACGTGTC--------------CAAAGTGT--CAAAAAA-ATATTAG-------CCGA-----GAT--------------------TT-GCCGCGA--------------------------------------------------------------------------------------ACGCATACGGGT------SizeHit CountTotal NormTotal
No Reads
droTak1
ATAAAATCAAATAGAGGTCTACGCAGACTT----GGGC--------------------------------------------------T-GTCGTAAAAATGCAAGGTGTGTGGAACGA----------------------------------AGAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGG-GGTT-----------------------------TTGAAAGTCTA----GTT--GTTAA-------GGAAGGTTTTTTAACCGGCCG--AC-GCTCAGCCGTCGATCGAGTTGCGGTTCAATCGTCGTCGGAGCCAGACGTGTC--------------CAAAGTGT--CAAAA---ATATTAG-------TTGA-----GAT--------------------TT-ACTGAGA--------------------------------------------------------------------------------------ACTCATACGGGT------SizeHit CountTotal NormTotal
No Reads
droEle1
ATAAAACCAAATAGAGGTCTACGCAGACTT----GGGG--------------------------------------------------T-GTCGTAAAAATGCAAGGTGTGTGGAACGA----------------------------------AAAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGG-GGTT-----------------------------TTGAAAGTCTA----GTT--GTTAA-------GGAAGGTTTTTTAACCGGCCG--AC-GATCAGCCGTCGATTGAGTTGCTATTGAATCGCCGTCGAAGCTAGACGTGTC--------------CAAAGTGT--CAAAA---ATATTAG-------CCGA-----GAG--------------------AT-TCCGAGA--------------------------------------------------------------------------------------ACCCACCGGGGT------SizeHit CountTotal NormTotal
No Reads
droRho1
ACAAAATCAAATAGAGGTCTATGCAGACTT----GGGG--------------------------------------------------T-GTCGTAAAATTGCAAGGTGTGTGGAACGA----------------------------------AAAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGG-GGTT-----------------------------TTGAAAGTCTA----GTT--GTTAA-------GGAAGGTTTTTTAACCGGCCG--AC-GCTCAGCCGTCGATCGAGTTGCGATTGAACCGCCGTCGGAGCCAGACGTGTC--------------CAAAGTGT--CAAAA---ATATTTG-------CCGA-----GAT--------------------TT-TCCGAGA--------------------------------------------------------------------------------------ATTCACTGGGGT------SizeHit CountTotal NormTotal
No Reads
droFic1
ACAAAATCAAATAGAGGTCTACGCAGACTT----GGGC--------------------------------------------------C-GTCGTAAAAATGCAAGGTGTGTGAAACGA------------------A--AGA--A----A--AAAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGG-GGTT-----------------------------TTGAAAGTCTA----GTT--GTTAA-------GGAAGGTTTTTTAACCGGCCA--AC-GATCAGCCGACGATCGAGTTGCGGTTCAATCGCCGTCGGAGCCAGACGTGTC--------------CAAAGTGT--CAAGAG--ATATTAG-------CCGA-----GAT--------------------TT-TCCGAGA--------------------------------------------------------------------------------------ACTCGTTGGGTT------SizeHit CountTotal NormTotal
No Reads
droKik1
ATAAAATCAAATAGAGGTCTAC-CAGACAACGATGGCT--------------------------------------------------T-GTCGTAAAATTGCAAGGTGTGTGGAACGA------------------A--GAA-AAAATAA--AAAAAGTGTTTATGTAGATAATTAATAA-AATTTACACATGGGGTTT-----------------------------TTGAAAGTCGA----GTT--GTTAG-------GGAAGGTTTTTTAACCGGGCA--AC-GTTTAGACGTCGATCGAGTTGCGGTTCAAGCGCCGTTCGAACCAGACGTGTC--------------CCAAGTGTGTCAGTAC--ATTTTAA-------CTGA-----GAT--------------------TTTTCCGAAA--------------------------------------------------------------------------------------GTTTACCGGGCT------SizeHit CountTotal NormTotal
No Reads
droAna3
ATAAAATCAAATAGAGGTCTACGTAGACCT----AGCC--------------------------------------------------G-GCCATAAAAATGCAAGGTGTGTGGAACGA-----------------------------------AAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGAGGGTT-----------------------------TTGAAAGCCAGTAGACTT--GTTAG-------GGAAGGTTTTTTAACCGGCCA--CC-GCTTAACCAACGATCGAGTTGCGGTTCAAGCGCCGTTCCGACCAGACGTGTC--------------CAAAGCAT--CACAA---G--CTAT-------CCGA-----GAT--------------------TT-GTCGAGA--------------------------------------------------------------------------------------AATCAGTGTGCT------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................TTCAAGCGCCGTTCCGACC.........................................................................................................................................................................................................1911.001000001
........................................................................................................................................................................................................................................................................................................................................................................................AT-------CCGA-----GAT--------------------TT-GTCGAGA--------------------------------------------------------------------------------------AATCA.............2311.001010000
..............................................................................................................................................................................................................................................................................................................................GCCGTTCCGACCAGACGT...................................................................................................................................................................................................1811.001001000
droBip1
-TAAAATCAAATAGAGGTCTGCGTAGACCT----AGTC--------------------------------------------------T-GCCATAAAAATGCAAGGTGTGTGGAACGA-----------------------------------AAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGAGGGTT-----------------------------TTGAAAGTCAGTAGACTT--GTTAG-------GGAAGGTTTTTTAACCGGCCA--CC-GCTTAACCAACGATCGAGTTGCGGTTCAAGCGCCGTTCCGACCAGACGTGTC--------------CAAAGTGT--CACAA---G--CTAT-------CCGG-----GAT--------------------TT-GTTGAGA--------------------------------------------------------------------------------------AATCAGTGTGCT------SizeHit CountTotal NormTotal
No Reads
dp5
ATAAAATCAAATAAAGGTCTGCGTAGATCT----AGCC--------------------------------------------------TGGTCATAA-AATGCAAGGTGTGTGGAATA------------------------------------AAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGAGGGTT-----------------------------TTGGATGTCTC----GAT--GTTAA--GGAAGAGAAGGTTTTTTAACTGGGGA-CTC-ACTCAACCGTCGATCGAGTTGCGGATCGAGTGCCGTTGCGATCAGACGTGGC--------------GGGAGTGT--T---------TTTAGCAGCGTTTTGA-----GAG--------------------TG-ATCGAGA--------------------------------------------------------------------------------------GTGAAGTGGTGT------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................CGTTGCGATCAGACGTGGC--------------GG................................................................................................................................................................................2111.0010100000000
droPer2
ATAAAATCAAATAAAGGTCTGCGTAGATCT----AGCC--------------------------------------------------TGGTCATAA-AATGCAAGGTGTGTGGAATA------------------------------------AAAACTGTTTATGTAGATAATTAATAA-AATTTACACATGAGGGTT-----------------------------TTGGATGTCTC----GAT--GTTAA--GGAAGGGAAGGTTTTTTAACTGGGGA-CTC-ACTCAACCGTCGATCGAGTTGCGGATCGAGTGCCGTTGCGATCAGACGTGGC--------------GGGAGTGT--T---------TTTAA-------CAGC-----G-----------------------T-TTTGAGA--------------------------------------------------------------------------------------GTGAAGTGGTGT------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................................................................................GAGTGCCGTTGCGATCAGACGTGG.................................................................................................................................................................................................2411.001010000
droWil2
TCA-AATCAAATAAAGGTCTAC-CAACCCC----CCTCTGTCTAAGGAGGAGGGGCATAAGGAGGTGTAGAAGGAGCCTAGAAGAGGGG-GTCATAAAAATGCAAGGTGTGTGGAAAAA------------------A--C--AAA----A-AAAAATTTGTTTATGTAGATAATTAATAA-AATTTACACATGGAGGTTGGTTTTTATTTTATTTTTTA-TTTTTTTTTCGAAAGTCTA----GTTTGGTTGGAGAGGTGGGAAGGTT--TTAACTGGGCGATTT-GCTCAACCGTCGATCGAGTTGTGAATTGCTTGTCAAGTGGGCCGGACGTGTGTGTTCTCTATTG--CGAAA--T--CAAGATA-ATTTT-----------------------------ATTATTATTATAT-TAGTGGAAGTGAA------------------------------------GTG----------------------------------------GAATTTAATGGATC------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................TATAT-TAGTGGAAGTGAA------------------------------------GTG----------------------------------------GAATTTA.............2811.00100100
................................................................................................................................................................................................................................................................................................................................CAAGTGGGCCGGACGTGTG................................................................................................................................................................................................1911.00100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAA------------------------------------GTG----------------------------------------GAATTTAATGG.........1911.00100100
.......................................................................................................................................................................................................................................................................................................................ATTGCTTGTCAAGTGGGCCGGACG....................................................................................................................................................................................................2411.00101000
...............................................................................................................................................................................................................................................................................................................................TCAAGTGGGCCGGACGTGTG................................................................................................................................................................................................2011.00101000
droVir3
TCA-AATCAAATAAAGGTCTACATAGATAC----AGGC--------------------------------------------------G-ACCATAAAAATGCAAGGTGTGTAGAAAACAAAATATAAAACAGACAAA--AAA-AAAAAGG--CAAAACAGTTTATGTATATAATTAATAAAAATTTACACATGGAGGTT---------------------------TTTGGAAAGTCTA----TAA--GCG-G-------TGTGGG--TTTTAAACGCTCGAAAC-GCTCAACAGACGATCGAGTTGTGATTTGAACGCCAAACGCGACACACGTCGT-ACACCCCATTTACTGG-GCTC--T---------ATTATCAGCGTT---------------------------------------------------------------ACTT--------------------GTGTTTTGTGCTTGGTTAATTTGTTTGGTTTTTTAGTGC--AGTGATTAGGTTTTGAGGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................GCCAAACGCGACACACGTCGT-A..............................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................CCAAACGCGACACACG....................................................................................................................................................................................................1611.001000000000000000000000000000000000000000000000000000000000010000
...................................................................................................................................................................................................................................................................................................AACAGACGATCGAGTTGT..............................................................................................................................................................................................................................1811.001000000000000000000000001000000000000000000000000000000000000000
.........................................................................................................................................A--AAA-AAAAAGG--CAAAACC...................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000000000000000000000000000001000
droMoj3
TCA-AATCAAATAAACG-------------------------------------------------------------------------ATCATAAAAATGCAAGGTGTGTAGAAAAA------------------A--A--AAA--TAGCGAAAAACAGTTTATGTAGATAATTAATAA-AATTTACACATGGAGGTT--------------------------TTTTGGAAAGTCTA-----TA--GCCAG-------GGAAGGTT--TTAAACGCTCGTAGC-GCTCAGCAAACGATCGAGTTGTGATTTGTACGGCAAACGCGACACACGTCCGTATACCCAATTT-CCGA-GCTC--T---------ATTATCAGCCGTAT-------------------------ATATAT-TACTAAAAATATATATATATATTTGTGTTACTTTTCGTAAAGTGTTGAAGTGTGTGTTTTGG------------------------------------GGCGGG--------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................TCAGCAAACGATCGAGTTGTG.............................................................................................................................................................................................................................2111.001000100
.......................................................................................................................................................................................................................................................................................................................TTTGTACGGCAAACGCGACACACGTCCGT...............................................................................................................................................................................................2911.001100000
.........................................................................................................................................................................................................................................................................................................................TGTACGGCAAACGCGACACACGTC..................................................................................................................................................................................................2411.001100000
droGri2
ATCAAATCAAATAAAGGTCTACGTAG----------GT--------------------------------------------------G-ACCATAAAAATGCAAGGTGTGTAGAAAAA----------------------------------ACACACTGCTTA------TAATTAACAA-AATATACACATAGAGGTT------------ATTTTTTTTTTGTTTTTTGGAAAGTCTA----TG---GCT-G-------AAAAGGTTT--TAACACTCG-GGCC-GCTTAACAGACGATCGAGTTGTGAACTGAACGCCAAACGCGACACACGTCGC--------------CAAAATAC--CG--------ATTAG-------CCAATTTGAGGGTTCATTTTTTTTTTAT----TT-TGCGATA--------------------------------------------------------------------------------------GTGCAGTGAAGT------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:19 PM