ID:dsi_24911 |
Coordinate:2r:5647454-5647603 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
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| -17.0 | -16.7 | -16.4 | -16.1 |
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 |
 |
 |
exon [2r_5647604_5647689_-]; CDS [2r_5647604_5647654_-]; CDS [2r_5646497_5647483_-]; five_prime_UTR [2r_5647484_5647689_-]; intron [2r_5645863_5647603_-]; exon [2r_5646426_5647689_-]
No Repeatable elements found
| ########################################################################################################################################################################################################################################################## TGAAAACAAGCAATCTCGGCCTGTACGCTTTCCGTTTAACCTTCGGTCAGGTGAGCAATCGCACATTAAACTAGAGGCAGCCAAACGGCAGAAACAGCATGCGCATTCCGGTGGCAACCCCTAAGTTTTTCGGCCGGACAAACCACTGACCACCACAATCGTCGTTGGAAATGGAGCGACTGCAGCCGGGAGACGAGTGTCTGGAGTGCCAAAGTGAAGGCAGGAATCACAAGCTGCGCTACTTTTATAT ***********************************************************************************....((...........(((.(((..(((((...............((((..((.....)).)))))))))..)))))).............))************************************************************************* |
Read size | # Mismatch | Hit Count | Total Norm | Total | M023 head |
M025 embryo |
SRR618934 dsim w501 ovaries |
M024 male body |
SRR553486 Makindu_3 day-old ovaries |
SRR553487 NRT_0-2 hours eggs |
SRR553485 Chicharo_3 day-old ovaries |
SRR902009 testis |
GSM343915 embryo |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....ACAAGCAATCTCGGCCTG................................................................................................................................................................................................................................... | 18 | 0 | 1 | 4.00 | 4 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....................CTGTACGCTTTCCGTTTAACCTTCGGTC.......................................................................................................................................................................................................... | 28 | 0 | 1 | 2.00 | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| TGAAAACAAGCAATCTCGGCCTGTACGCT............................................................................................................................................................................................................................. | 29 | 0 | 1 | 2.00 | 2 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 |
| ...............................................................................................................................................................................................GACGAGTGTCTGGAGTGC......................................... | 18 | 0 | 1 | 2.00 | 2 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................CACCACAATCGTCGTTGGAAATGGAGC......................................................................... | 27 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................................................................GAGACGAGTGTCTGGAG............................................ | 17 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........AATCTCGGCCTGTACGCTT............................................................................................................................................................................................................................ | 19 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................ACCTTCGGTCAGGTGAGC.................................................................................................................................................................................................. | 18 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| TGAAAACAAGCAATCTCGGCC..................................................................................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................................................................AGCGACTGCAGCCGGGAGACG....................................................... | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................GTTAAACTAGAGACAGCCAAACGGCAGA.............................................................................................................................................................. | 28 | 2 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...........AATCTCGGCCTGTACGCTTTCC......................................................................................................................................................................................................................... | 22 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .GAAAACAAGCAATCTCGGC...................................................................................................................................................................................................................................... | 19 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................................................................................................TGCCAAAGTGAAGGCAGGAATCACA................... | 25 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ........AGCAATCTCGGCCTGTACGCTTTCCGT....................................................................................................................................................................................................................... | 27 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................................................................................................GGCAGGAATCACAAGCTG.............. | 18 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................AACGGCAGAAACAGCATG..................................................................................................................................................... | 18 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............TCTCGGCCTGTACGCTTTCCGTTTA.................................................................................................................................................................................................................... | 25 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................................................................................TGGAGTGCCAAAGTGAAGGCAGGAA........................ | 25 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................TTAAACTAGAGGCAGCCAAACGGCAGA.............................................................................................................................................................. | 27 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............ATCTCGGCCTGTACGCTTTCC......................................................................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................................................TCGTCGTTGGAAATGGAGCGACTGC................................................................... | 25 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................TGAGCACTCGCACATTAAACTAGGC.............................................................................................................................................................................. | 25 | 3 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ....AACAAGCAATCTCGGCCTGT.................................................................................................................................................................................................................................. | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................CACCAAACTCGTCGTTGGA................................................................................. | 19 | 2 | 3 | 0.67 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 |
| ......................................................................................................................................................CACCAAACTCGTCGTTGG.................................................................................. | 18 | 2 | 7 | 0.43 | 3 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................TGCGCTTTCCGGTGGC....................................................................................................................................... | 16 | 1 | 4 | 0.25 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ......................................................................................................................................................CACCAAACCCGTCGTTGGA................................................................................. | 19 | 3 | 11 | 0.18 | 2 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 |
| ...........................CGTCCGGTTTAACCTTCGG............................................................................................................................................................................................................ | 19 | 3 | 6 | 0.17 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ...........................CGTACCGTTTAAACTTCGG............................................................................................................................................................................................................ | 19 | 3 | 6 | 0.17 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ....................................................................................................GCGCTTTCCGGTGGC....................................................................................................................................... | 15 | 1 | 7 | 0.14 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...........................CGTTCCGGTTAAGCTTCGG............................................................................................................................................................................................................ | 19 | 3 | 9 | 0.11 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ........................................................................AGAGGTAGCCAAACG................................................................................................................................................................... | 15 | 1 | 12 | 0.08 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................CGTTCGGTTTAAACTTCGG............................................................................................................................................................................................................ | 19 | 3 | 13 | 0.08 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................CTTACGGTTTAAACTTCGG............................................................................................................................................................................................................ | 19 | 3 | 14 | 0.07 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................................................................................AAAGTGAACGCAGGA......................... | 15 | 1 | 15 | 0.07 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
|
ACTTTTGTTCGTTAGAGCCGGACATGCGAAAGGCAAATTGGAAGCCAGTCCACTCGTTAGCGTGTAATTTGATCTCCGTCGGTTTGCCGTCTTTGTCGTACGCGTAAGGCCACCGTTGGGGATTCAAAAAGCCGGCCTGTTTGGTGACTGGTGGTGTTAGCAGCAACCTTTACCTCGCTGACGTCGGCCCTCTGCTCACAGACCTCACGGTTTCACTTCCGTCCTTAGTGTTCGACGCGATGAAAATATA
*************************************************************************....((...........(((.(((..(((((...............((((..((.....)).)))))))))..)))))).............))*********************************************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR618934 dsim w501 ovaries |
SRR553485 Chicharo_3 day-old ovaries |
SRR553488 RT_0-2 hours eggs |
M024 male body |
|---|---|---|---|---|---|---|---|---|---|
| ............................................................................................TTGTCGTACGCGTAAG.............................................................................................................................................. | 16 | 0 | 2 | 3.00 | 6 | 6 | 0 | 0 | 0 |
| ..............................AGGGAAATTGGAAGCC............................................................................................................................................................................................................ | 16 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 |
| ........................TGGGAAGGGTAAATTGGAAGC............................................................................................................................................................................................................. | 21 | 3 | 3 | 0.33 | 1 | 0 | 0 | 1 | 0 |
| ..............................................................................................................................AGAAGCCGGCCTGTTT............................................................................................................ | 16 | 1 | 7 | 0.14 | 1 | 1 | 0 | 0 | 0 |
| ...........................................................................................................................................................................................................CTCACGGTTTGACTT................................ | 15 | 1 | 20 | 0.10 | 2 | 0 | 0 | 2 | 0 |
| ..........GGCAGAGCCGGACATG................................................................................................................................................................................................................................ | 16 | 2 | 18 | 0.06 | 1 | 0 | 1 | 0 | 0 |
| .....................................................................................................................................GCCCTGTTTGGTGCCT..................................................................................................... | 16 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 |
| ..........................CGAAAGGCTAATAGGAATC............................................................................................................................................................................................................. | 19 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 |
Generated: 04/23/2015 at 08:29 PM