ID:

dsi_24878

 Coordinate:

x:1873489-1873768 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.7 -27.4 -27.2

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AGGAGTAGCCGGACCTCGACGTGACCCCCATCCATCCGTACATAAACATTGTAAGTTCAGTTGGTGTTCCGATCAATATGCTTTTGAGTGCTCCTAGGTTAGTTTCTCTTTCGTGTTTTCCATTTTCCAGTGAGAGTCTCTGGCGCGTGCGGCTCTCCCATTCCCGATTACTTGTCGTGTGTTAGTCAATAAAGGATCCTAATTAATTCCTTTAGTAACTGCAGTGACACATCTGTCATTCGTTTCACAACCGGTTTACATTCGTATGCAGATGCTGATATTGTTTTCGCGCTTATCAGCTACCTGTTAACCCAGTGTTGCTGTTTGTCTTGCTTGTTTACAGACACACGCGTTCGCACCCCACACAGGCACACACACAA
******************************************************************************************************************************************.(((((((..(((((....................))))))))))))....(((((((...........)))))))....(((((((((((....))))))............(((.......)))..))))).************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 M024
male body		 O002
Head
 SRR618934
dsim w501 ovaries
.............................................................................................................................................................................................................ATTCCTTTAGTAACGG............................................................................................................................................................... 16 1 1 22.00 22 22 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TGATTCCTTTAGTAACGG............................................................................................................................................................... 18 2 4 9.00 36 36 0 0 0 0 0 0 0
.............................................................................................................................TCCAGTGAGAGACTCTGGCGCGTGC...................................................................................................................................................................................................................................... 25 1 1 9.00 9 0 8 1 0 0 0 0 0
..............................................................................................................................................................................................................TTCCTTTAGTAACGG............................................................................................................................................................... 15 1 4 7.25 29 29 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ATTCCTTTAGTAACGGC.............................................................................................................................................................. 17 1 1 4.00 4 4 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................TTCACAACCGGTTTACATTCGTATGCAGA............................................................................................................ 29 0 1 3.00 3 0 2 1 0 0 0 0 0
.............................................................................................................................................................................................................ATTCCTTTAGTAACGGCGA............................................................................................................................................................ 19 3 4 2.50 10 10 0 0 0 0 0 0 0
.............................................................................................................TTCGGGTTTTCCATTTTCCAGTGAGA..................................................................................................................................................................................................................................................... 26 1 1 2.00 2 0 0 2 0 0 0 0 0
..................................................................................................................................TGAGAGACTCTGGCGCGTGCGGCTCT................................................................................................................................................................................................................................ 26 1 1 2.00 2 0 2 0 0 0 0 0 0
.............................................................................................................................TCCAGTGAGAGACTCTGGCGCGTGCGGC................................................................................................................................................................................................................................... 28 1 1 2.00 2 0 2 0 0 0 0 0 0
....GTAGCCGGACCTCGACGTGACCCCC............................................................................................................................................................................................................................................................................................................................................................... 25 0 1 2.00 2 0 0 0 2 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................TGCTGTTTGTCTTGCTTGTTTACAGA.................................... 26 0 1 2.00 2 0 1 1 0 0 0 0 0
AGGAGTAGCCGGACCTCGACG....................................................................................................................................................................................................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 2 0 0 0 0
........................................................................................................................................................................TAATTGTCGTGTGTTAGTCAATAAAGGA........................................................................................................................................................................................ 28 1 1 2.00 2 0 1 1 0 0 0 0 0
............................................................................................................................TTCCAGTGAGAGACTCTGGCGCGTGC...................................................................................................................................................................................................................................... 26 1 1 2.00 2 0 2 0 0 0 0 0 0
...........................................................................................................................TTTCCAGTGAGAGACTCTGGCGCGTGC...................................................................................................................................................................................................................................... 27 1 1 2.00 2 0 2 0 0 0 0 0 0
.........CGGACCTCGACGTGACCCCC............................................................................................................................................................................................................................................................................................................................................................... 20 0 1 2.00 2 0 0 0 2 0 0 0 0
............................................................................................................................................................................................................GATTCCTTTAGTAACGGC.............................................................................................................................................................. 18 2 2 2.00 4 4 0 0 0 0 0 0 0
....................................................................................TGAGTGCTCCTAGGCTAGTTTCT................................................................................................................................................................................................................................................................................. 23 1 1 2.00 2 0 0 2 0 0 0 0 0
....................................................................................................................................................................................................................................................................TTCGTATGCAGATGCTGATATTGTT............................................................................................... 25 0 1 2.00 2 0 0 2 0 0 0 0 0
...............................................................................................................................................................................................................CCCTTTAGTAACTGCAGTGACACATC................................................................................................................................................... 26 1 1 2.00 2 0 1 1 0 0 0 0 0
..............................................................................................................................................................................................................TTCCTTTAGTAACGGC.............................................................................................................................................................. 16 1 3 1.67 5 5 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TGATTCCTTTAGTAACGGC.............................................................................................................................................................. 19 2 2 1.50 3 3 0 0 0 0 0 0 0
............................................................................................................................................................................................................GATTCCTTTAGTAACGG............................................................................................................................................................... 17 2 5 1.40 7 7 0 0 0 0 0 0 0
..........................................................................................................................................TCTGGCGCGTGCGGCTCTCCCATT.......................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0
.......................................................................................................................................................................TTAATTGTCGTGTGTTAGTCAATAAAGG......................................................................................................................................................................................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0
..................................................................................................................................TGAGAGACTCTGGCGCGTGCGGC................................................................................................................................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0
...............................................CATGTAAGTTCAGTTGGTGTTCCGA.................................................................................................................................................................................................................................................................................................................... 25 2 1 1.00 1 0 0 0 0 1 0 0 0
..........................................................................................................TCTTTCGGGTTTTCCATTTTCCAGTGA....................................................................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 1 0 0 0
.............................................................TGGTGTTCCGATCAATATGCTTTTGA..................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................TCCTAGGCTAGTTTCTCTTTCGGGT........................................................................................................................................................................................................................................................................ 25 2 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................TTCGCGCTTATCAGCTACCTGTTA....................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................TCAATATGCTTTTGAGTGCTCCTAGGC......................................................................................................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0
.........CGGACCTCGACGTGACCCTCATCCAT......................................................................................................................................................................................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................CCAGTGTTGCTGTTTGTCTTG................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.......GCCGGACCTCGACGTGACCCTCATCCA.......................................................................................................................................................................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................TCCTAGGCTAGTTTCTCTTTCGGGTTT...................................................................................................................................................................................................................................................................... 27 2 1 1.00 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................TGTCGTGTGTTAGTCAATAAAGG......................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................CATTCGTATGCAGATGCTGATATTGT................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................TGCAGTGACACATCTGCCATTCGTT........................................................................................................................................ 25 1 1 1.00 1 0 0 1 0 0 0 0 0
................................................................................................................................AGTGAGGGTCTCTGGCGCGTG....................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0
........................................................................................................................................................................TAATTGTCGTGTATTAGTCAA............................................................................................................................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................ATTCGTATGCAGATGCTGATA.................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................TGTCGTGTGTTAGTCAATAAAGGA........................................................................................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................CCTTTAGTAACTGCAGTGACACATC................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0
..............CTCGACGTGACCCCCATCCATC........................................................................................................................................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0
..............................................................................................TAGGCTAGTTTCTCTTTCGGGTTT...................................................................................................................................................................................................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................GATTAATTGTCGTGTGTTAGT.................................................................................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................TGCTCCTAGGCTAGTTTCTCTTTCGGGTT....................................................................................................................................................................................................................................................................... 29 2 1 1.00 1 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................TTCGTATGCAGATGCTGATAT................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.......GCCGGACCTCGACGTGACTTTCATCCATC........................................................................................................................................................................................................................................................................................................................................................ 29 3 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................TTTCCATTTTCCAGTGAGAGACTC................................................................................................................................................................................................................................................ 24 1 1 1.00 1 0 1 0 0 0 0 0 0
AGGAGTAGCCGGACCTCGACGTGACCC................................................................................................................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................TTAATTGTCGTGTGTTAGTCAATAAA........................................................................................................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0
.......................................................................................................................................................................TTAATTGTCGTGTGTTAGTCAATAAAGGA........................................................................................................................................................................................ 29 1 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................................................AGTGAGAGACTCTGGCGCGTGCGGC................................................................................................................................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................................AGAGACTCTGGCGCGTGCGGC................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................................................................................................TAATTGTCGTGTGTTAGTCAATAAAGG......................................................................................................................................................................................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0
.................................................................................TTTTGAGTGCTCCTAGGCTAG...................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0
....GTAGCCGGACCTCGACGTGACCCCCATC............................................................................................................................................................................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 1 0 0
AGGAGTAGCCGGACCTCGACGTGACCCTC............................................................................................................................................................................................................................................................................................................................................................... 29 1 1 1.00 1 0 0 1 0 0 0 0 0
....GTAGCCGGACCTCGACGTGACCCC................................................................................................................................................................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................................................................................................TAACCCAGTGTTGCTGTTTGTCTTGC............................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0
.......GCCGGACCTCGACGTGACCCTCATCCATC........................................................................................................................................................................................................................................................................................................................................................ 29 1 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................CGTGTGTTAGTCAATAAAGGATCCTAATT................................................................................................................................................................................ 29 0 1 1.00 1 0 0 1 0 0 0 0 0
..............................................................................................................TCTGGTTTTCCATTTTCCAGTGAGAGA................................................................................................................................................................................................................................................... 27 3 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................................................................................TTCCCGATTAATTGTCGTGTGTTAGT.................................................................................................................................................................................................. 26 1 1 1.00 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................................................GGTTTACATTCGTATGCAGATGCTGA...................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................................TCCAGTGAGAGACTCTGGCGCGTG....................................................................................................................................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................TGTTAACCCAGTGTTGCTGTTTGTCT.................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................................................................................................TTGTCGTGTGTTAGTCAATAAAGGA........................................................................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0
.................................................................................................GCTAGTTTCTCTTTCGGGTTT...................................................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0
............................................AAACATGTAAGTTCAGTTGGTGTTCCGA.................................................................................................................................................................................................................................................................................................................... 28 3 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................TTCGCGCTTATCAGCTACCTGTTAA...................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0
.........CGGACCTCGACGTGACCCTCATCCATC........................................................................................................................................................................................................................................................................................................................................................ 27 1 1 1.00 1 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................TCACAACCGGTTTACATTCGTATGCAGA............................................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................................CACACAGGCACACACACAA 19 0 3 1.00 3 0 0 0 0 0 0 3 0
..............................................................................................................................................................................................................TTCCTTTAGTAACGGCGA............................................................................................................................................................ 18 3 20 0.85 17 17 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TGATTCCTTTAGTAACGGCG............................................................................................................................................................. 20 3 2 0.50 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TTCCTTTAGTAACGGCG............................................................................................................................................................. 17 2 4 0.50 2 2 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CGTGATTCCTTTAGTAAC................................................................................................................................................................. 18 3 20 0.45 9 9 0 0 0 0 0 0 0
........................................................................................................................................................................................................ACGTGATTCCTTTAGTAAC................................................................................................................................................................. 19 3 12 0.33 4 4 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TCCTTTAGTAACGGC.............................................................................................................................................................. 15 1 4 0.25 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GTGATTCCTTTAGTAACGGC.............................................................................................................................................................. 20 3 4 0.25 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ATTCCTTTAGTAACG................................................................................................................................................................ 15 1 5 0.20 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ATTCCCTTAGTAACGGC.............................................................................................................................................................. 17 2 6 0.17 1 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................ATTCCCTTAGTAACGG............................................................................................................................................................... 16 2 20 0.15 3 0 0 3 0 0 0 0 0
............................................................................................................................................................................................................GATTCCTTTAGTAACGGCG............................................................................................................................................................. 19 3 9 0.11 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TGATTCCTTTAGTAA.................................................................................................................................................................. 15 1 10 0.10 1 1 0 0 0 0 0 0 0
....................................................................................TGAGTGGTCCTAGGTTAAA..................................................................................................................................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 0 1
.............................................................................................................................................................................................................ATTCCTCTAGTAACGGCG............................................................................................................................................................. 18 3 19 0.05 1 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................CCTTTAGTAACGGCG............................................................................................................................................................. 15 2 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................CGTGGGTTAGTCGATA............................................................................................................................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0 0 0
.............................................................................ATGATTTTGAGTGCT................................................................................................................................................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 0 1
.....................................................................................GACTCCTCCTAGGTTA....................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................................................................ATGCAGTTGCTGATATG.................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 1
....................................................................................................................................................................................GTTAGTCAATAAAGA......................................................................................................................................................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0

Anti-sense strand reads

TCCTCATCGGCCTGGAGCTGCACTGGGGGTAGGTAGGCATGTATTTGTAACATTCAAGTCAACCACAAGGCTAGTTATACGAAAACTCACGAGGATCCAATCAAAGAGAAAGCACAAAAGGTAAAAGGTCACTCTCAGAGACCGCGCACGCCGAGAGGGTAAGGGCTAATGAACAGCACACAATCAGTTATTTCCTAGGATTAATTAAGGAAATCATTGACGTCACTGTGTAGACAGTAAGCAAAGTGTTGGCCAAATGTAAGCATACGTCTACGACTATAACAAAAGCGCGAATAGTCGATGGACAATTGGGTCACAACGACAAACAGAACGAACAAATGTCTGTGTGCGCAAGCGTGGGGTGTGTCCGTGTGTGTGTT
************************************************************************************************************.(((((((..(((((....................))))))))))))....(((((((...........)))))))....(((((((((((....))))))............(((.......)))..))))).****************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 O001
Testis
 O002
Head
 M023
head
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
......................................................................................................................AGGTAAAAGGTCACTCTCTGA................................................................................................................................................................................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................AGCATACGTCTACGACTATA................................................................................................... 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
........................................................................................................................................................................ATGAACAGACCACAATCAGTTAT............................................................................................................................................................................................. 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................GTGCGCAAGCGTGGGGTGTGT............. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AACAGCACACAATCAGTTATT............................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................AGGATTAATTAAGGAAATCA.................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................GCCAAATGTAAGCATACGTC............................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................AGGCTAGTTATACGAAAACTCA................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................ACAAGGCTAGTTATACGAAAA....................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................AGGCTAGTTATACGAAAACTC.................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................AGAGAAAGCCCAAAAGGTAAA............................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................AGCGCGAATAGTCGATGGACAATTGGGT.................................................................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........GCCTGGAGCTGCACTGGGAGT.............................................................................................................................................................................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................AAAAGGTCACTCTCTGAGAC.............................................................................................................................................................................................................................................. 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................AAAGTGTTGGCCAAA........................................................................................................................... 15 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................GCGCGATTAGTCCATGGACT......................................................................... 20 3 4 0.50 2 0 0 0 0 0 0 2 0 0 0
....CGTCGGCCTGGAGCTTCACTG................................................................................................................................................................................................................................................................................................................................................................... 21 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................................AAGTGTTGGCCGAAT.......................................................................................................................... 15 1 7 0.43 3 0 3 0 0 0 0 0 0 0 0
....................................GCATCTATTTGTAACA........................................................................................................................................................................................................................................................................................................................................ 16 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................CGGGAATAGTCCATGGACT......................................................................... 19 3 13 0.31 4 0 0 4 0 0 0 0 0 0 0
.......................................................................................................................................CAGAGACTGCGCACGGC.................................................................................................................................................................................................................................... 17 2 6 0.17 1 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................................................GCAAAGTGGTGGCCACA........................................................................................................................... 17 2 15 0.07 1 0 0 0 0 0 0 0 0 1 0
......................................................................................TCACGAAGATTCAATCA..................................................................................................................................................................................................................................................................................... 17 2 17 0.06 1 0 0 0 0 0 0 0 0 1 0
.................ATGAACTGGGGGTAGGAAG........................................................................................................................................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:1873439-1873818 + dsi_24878 AGGAGTAGCCGG--ACCTCGA---CGTGACCCCCATC----CATCCGTAC--------ATAAACATTGTAAGTTCAGTTG-GTGTTCC--GATCAATATGC---TTTTGAGTGCTCCTAGGTTAG--------TTTCTCTTTCGTGTTTTCC-----ATTTTCCAGTGAGAGT-CTCTGGCGCGTGCGGCTCTCCCATTCCCGATTACT---------T---GTCGTGTGTTAG----------------------------------------------TCAATAAAGGATCCTAATT--------AATTCCTTTAGTAAC---TGCAGTGACAC-----------ATCTGT--CATTCG-TTTCACAA-CCGGTTTACATTCGT-ATGCAGAT------------------GC----TGATATTGTTTTCGCGCTTATCAGCTACCTGTT-AACCCA------------------GTGTTGCTGTTTGTC-TTGCTTGTTTACAG-----ACA-CACGCGTTCGCAC-----CCCACACAGGCACA------CACACAA
droSec2 scaffold_10:1819136-1819513 + AGGAGTAGCCGG--ACCTCGA---CGTGACCCTCATC----CATCCGT-----------TAAACATTGTAAGTTCAGTTG-GTGTTCC--GATCAATATGC---TTTTAAGTGCTCCTAGGTTAG--------TTTCTCTTTCGGGTTTTCC-----ATTTTCCAGTGAGAGA-CTCTGGTGCGTGCGGCTCTCCCATTCCCGATTACT---------T---GTCGTGTGTTAG----------------------------------------------TCAATAAAGGATCCTAATT--------AATCCCTTTAGTAAC---TGCAGTGACAC-----------ATTTGC--CATTCG-TTTCACAA-CCGGTTTACATTCGT-ATGCAGAT------------------GC----TGATATTGTTTTCGCGCTTATCAGCTACCTGTT-AACCCA------------------GTGTTGCTGTTTGTC-TTGCTTGTTTACAG-----ACAACACGCGTTAGCAC-----CCCACACAGGCACA------CACACAA
dm3 chrX:2035590-2035974 + AGGAGTAGCCGG--ACCTCGA---CGTGACCCCCATC----CATCCGTAC--------ATAAACATTGTAAGTTCAGTTG-GTGTTCC--GATCAACATGC---TTTTGAGTGCTTCTGCGTTAG--------TTTCTCTTTCGGTTTTTCA-----ATTTTCCATTGAGAGA-TTCTGGCGCGTGAGGCTCTCCCATTCCCGGTTACT---------T---GTCGTGTGTTAG----------------------------------------------TGAAT-GAGGATCCTAATT--------AATCCCTTTAGTAAC---TGCAGTGACAC-----------ATCTGA--TATTCG-TTTCACAA-CCGGTTTATATATGT-ATGCAGAT------------------GC----TGATATTGTTTTCGCGCTTATCAGCTACCTGTT-AACCCA------------------GTGTTTCTGTTTGTC-TCGCTTGTTTACAG-----ACAACACGCGTTCGCACCCGCCCCCACACACACACA------TACACAA
droEre2 scaffold_4644:1998801-1999171 + AGTAGTGTCCGG--ACCTCGA---CGTGAACACCATC---CCATTCGTGA--------ATTAACCTTGTAAGTTCAGTTCCGAGCTCC--GATCAATATGC---TTTCCAGCGCTTGTAGGTTAG--------CTTCTCTTTCGGGTTTTCC-----ATTTTCCAGTGAGAGAACTCTGGCGCGTGCGGCTCTCCCGTTCT---------------------CTTGTGTGTGCA----------------------------------------------TGAAGAAAGGATTCCAATT--------AATCCTTTTAGTAAC---TGCAGTGACAC-----------ATCTGC--CATTCG-TTTTCCAA-CCGGTTCACATTCGT-ATGCAGAT------------------GC----TGATATTGTTTTCGCGCTTATCAGCTACCTGTT-AGCCCA------------------GTGTGGCTGTTTGTT-TTGCTTGTTTATAG-----ACAACACGCGTTCGCAC---------CACAGACACA------CACAAAA
droYak3 X:6288416-6288769 - GG------------ATCTCGA---CGTAACCACCATC----CTTCCGTAA--------ATTGACCTTGTAAGTTCAGTTG-GAGTTCC--GATCAATATGC---TTCCGAGGGCTTCTAGGTTAG--------TTTCTCTTTCGGGTTTTCC-----ATTTTTCAGTGAGA-------GGCGCGTGCGGCTCTCCCGTTC------ATT---------T---GTTGTGTGTGCG----------------------------------------------TGGAGTAAGGATCCCAATT--------AATCCTTTAATTAAC---T--AGTGGAA------AG---CTTCTGC--CATTCG-TTTCGAAA-CCGGCTCGCATTTGA-ATGCAGAT------------------GC----TGATATT-------AGCTTATCAGCTACCTGTT-AACCCA------------------GTGTCGCTGTTTGTT-TTGCTTGTTTATAG-----ACAACACGCGTTCGCAC-----CACATACA----CACACTAAGACACGA
droEug1 scf7180000409093:79897-80277 - GTGATTATCCTT--AGGA--------------------GAACATCGGTAA--------ATAG------TAATTACAGAAA-------------AAAGA----------------TT-CAAGTTAGTTGCTGAGTTT-GGTTTT-GGCTCTCT-----ACTTTCCAGTGAGGGA--ACTGGCGCGTGCGGCTCTCCCGTTGA------GTGAGTGTGTGTGTGCTTG----A----G--TGTGCATCGAAATG------AATAGTT--CCTAAGTGATATGCAAATAAAGGATACCAATA--------AAACCCTTTATGGAC--TTGCAATGACAT-----------TGCTGT--CATTTG-TTTAACAA-CCGGTTTACATACGC-ACACGGCA------------------AT----TGATAAAGTTATCGCTCTTATCAGCTACCTGTT-AACCCT------------------ATGTTGTTGTTTATGGTTACTTGTTTATGC-----ACA-CACACGTGCGGTTTAA--CTCACACAGGCGCA------GAGACAA
droBia1 scf7180000301760:2007953-2008313 + GAAGGCATCCTT--GGCTCGA---AGTGACCAGTAT--------CTGAAA--------GTAAAAACTGTGAGTGCAGTTC-CAGTTCC---------------------AGTGCTTTTGGGGTGG--------CCTCTGCTTT-GCTTTTCC-----ATTTTCCAGTGCGAGA-AACTGGCGCGTGCGGCTCTCTTTTT----------------------GGCTG----T----G--TGTGCATTCA-ACT------AATATTTTTTCTGAGTGATATGCAAATAAAGGATCCCCAAT--------AAACCTTTTATTAAC--TTGCAACGACAT-----------TGCCGT--CGTTTG-TTTTACGA-CCGGCTTACATAT-----GCAGAT------------------TC----TGATAACGTTTCCAGGCTTATCAGCTACCTGTT-AACCCT------------------ATGTTGTTTT------TTACTTGTTTGAACACAACACAACACGCGTTTA--------------------CC------CACACAA
droTak1 scf7180000415191:110187-110555 + GAAAGTATCTTTGG---------------C--------CAACATCGATAAAT------ACAAA------------------------------AAGTATGT---TTTTGAGTGCTTTTAGGTTAG--------TTTCTGTTTTTGGTTTTCC-----ATTTTCCAGTGCGAGA-TATCGGCGCGTGCCGCTCTCTTT------------------------GTTTG----TGTGGGGCATTGCATTGAAGCT------AATATTT--CCCGAGTGCTATGCAAATAAAGGATCCTAATT--------AAACCTTTTATTAACACATTCAATGACAT-----------TGCCGT--CATTTG-TTTTACGA-CCGGTTTACATAT-----GCAGAT------------------TT----TGATAAGGCTTACACGCTTATCAGCTACCTGTT-AACCCCCCACACA--------CATATGTTGTTATTTATTTTTACTTGTTTATAC-----TCAGCACGCGTTTGCA----------CACACACACC------CACCTAA
droEle1 scf7180000491001:1570702-1571093 + AAT-----CTATGGGTATTCGCAGTATATTC-TCAATTAAACATCACTAA--------ATAGAGATTGTGAGTGCTGGTG-CAGTCCAAAATAAAATATGC---TTTTGAGTGCTTTT--------------------------GCTCTTCC-----ATTTTCCAGTGAGAAA-AACAAGCGCGTGCGGCTCTCCCGTTTTTG-TTGTT---------T---G-------TGTGTG--TTTGCATTTAAACT------AATATTT--TGTGAGTGGCATGCAAATAAAGGATCCTAATT--------AATCGTTATATTAAT--ATGCAATGACATTGAAAAA---CCATTTT--CATTTG-TTTTACAA-CCGGTTTACATATA--------AT------------------GT----TGATAACACTTTCACGCTTATCAGCTTCCTGTT-AACCCTATT--CA--------CATATGTTGTTGTTTATTTTTACTTGTTTATAT-----ACAACACGCTTTTA--------------------CA------TACACAA
droRho1 scf7180000779506:92773-93171 + GGGAATACCTATGGATATAGG---CAGTATCCCCAACTCAACATCAGTCG--------ATAGAAATTGTGAGTGCAGTTA-A---------AACAATATTC---TCTTGAGTGCTT-TAGGTTAGTT---TAGTTT---------ATTTTCCAATTTATTTTCCAGTGAGAAA-A-AAGGCGCGTGCGGCTCTCTTA-------------------------AAAG----T----G--TTTGCATCAAAACT------AATATTT--CCTGAGTGGTATGCAAATAAAGTATCCTAATT--------AATCGTTTTGTTAAC--ATGCAATGGCATTGAC--G---CCTCTTT--TTTTTG-TTTTGCAA-CCGGTTTACATATG--------AT------------------GG----TGATAACGCTTTCCCGCTTATCAGCTACCTGTTTAACCCTATG--CA--TACATATGTATGTTGCTCTTTATTTTTACTTGTTTATTC-----ACAACACGCGTTTACC----------------CACA------CACATAA
droFic1 scf7180000454072:3156438-3156814 + AGCGATATCCTC--AGCTGG---------C--------TAGCATCAGTAAAAACAACAGTAAAAACTGTGAG---------------------------------------TGGTT-TGGTTTAT--------TTTCTCTTTTCGGTT-TCCA---TAGTTTCGAGAGTGAGA-AAGTGGCGCGTGCGGCTCTCGCGTGTGAA---------TGTGTTTATAGATG----T----G--TGGGCAACAAAACTGTGGCTGCTGTTT--TT--GGGGATATGCAAATAAAGAATCCTCGTT--------CAGCGTTTGATTAAC--TTACGACGACATTGACGAACGCCCGATGA--CATTAA-TTTTACACAGGGGCTTACATTTGT-AC-------------------------------GACAGCGC-TTCGCGCTTATCAGCTACCTGTT-AACTGTATG--CACATGCTTACATATGTTGTTTATTATCTTTGGTTGTGCATAA-----ACAACACGCGTTTG-----------------------------------
droKik1 scf7180000302696:595472-595861 + AGGATTTGGCTT--AATCCAA---CGTGATCGCCAT--------CAGCCAAC------CCAAGAAGTGTGAGTGTGAAAG-GAGG-GG--GATAAACATAAATGAGTTGAGTGTTTTCGGGAAAG--------CATCTCA------TTTCCA-----ACATTCCAGTGACCGC-AATTGGCGCGTGCGGCTCTCACGATGC------GTTT-------T---GATGTGTGCGT--------GTGTAAAAACT------AATATTT--TCTAA-------GCAAATATACTGCACTT-TTAATTGTACAAAAATATTAT------------TAACAT-----------ATGTGCTGTATTCGTTTTTACAA-CCGGCTTACACATGT-ACATAGCTGTGTATGTACAAGTTGTTAT----TGATAAGGCTCTCTCGGTTATCACAAACCTGTT-GGCAT--------------------------T-----TT-TTGTTTGCCTCCAA--ATCAAAACACACGTTGA------------------CACA------CACACAC
droPer2 scaffold_11:2835468-2835587 - ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGG-TTTTACAACCGGTTTCACATAGGTTCTGC---C------------------CTAACACG----CTATCTCTCGCTTATCATCTACCTGTT-AGGCGA------------------GTATTTT-----------GATACACTCTTG--TCTCGGACACGCGT--------------------GCACC------CATACCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGGAGTAGCCGG--ACCTCGA---CGTGACCCCCATC----CATCCGTAC--------ATAAACATTGTAAGTTCAGTTG-GTGTTCC--GATCAATATGC---TTTTGAGTGCTCCTAGGTTAG--------TTTCTCTTTCGTGTTTTCC-----ATTTTCCAGTGAGAGT-CTCTGGCGCGTGCGGCTCTCCCATTCCCGATTACT---------T---GTCGTGTGTTAG----------------------------------------------TCAATAAAGGATCCTAATT--------AATTCCTTTAGTAAC---TGCAGTGACAC-----------ATCTGT--CATTCG-TTTCACAA-CCGGTTTACATTCGT-ATGCAGAT------------------GC----TGATATTGTTTTCGCGCTTATCAGCTACCTGTT-AACCCA------------------GTGTTGCTGTTTGTC-TTGCTTGTTTACAG-----ACA-CACGCGTTCGCAC-----CCCACACAGGCACA------CACACAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................TTCACAA-CCGGTTTACATTCGT-ATGCAGA.......................................................................................................................................................................2913.00300000020100000000
....GTAGCCGG--ACCTCGA---CGTGACCCCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200200000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGTTTGTC-TTGCTTGTTTACAG-----A................................................2612.00200000010100000000
AGGAGTAGCCGG--ACCTCGA---CG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200200000000000000
.........CGG--ACCTCGA---CGTGACCCCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200200000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TTCGT-ATGCAGAT------------------GC----TGATATTGTT....................................................................................................................................2512.00200000000200000000
...............................................................................................................................................................................TCTGGCGCGTGCGGCTCTCCCATT..........................................................................................................................................................................................................................................................................................................................................................................2411.00100000000100000000
..............................................................................TG-GTGTTCC--GATCAATATGC---TTTTGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCGCTTATCAGCTACCTGTT-A...........................................................................................................2411.00100000010000000000
............................................................................................TCAATATGC---TTTTGAGTGCTCCTAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCA------------------GTGTTGCTGTTTGTC-TTG.................................................................2111.00100000010000000000
..........................................................................................................................................................................................................................T---GTCGTGTGTTAG----------------------------------------------TCAATAAAGG...............................................................................................................................................................................................................................................................................2311.00100000000100000000
...........................................................................................................................................................................................................................................................................................................................................................................................CATTCGT-ATGCAGAT------------------GC----TGATATTGT.....................................................................................................................................2611.00100000000100000000
............................................................................................................................................................................................................................................................................................................................................................................................ATTCGT-ATGCAGAT------------------GC----TGATA.........................................................................................................................................2111.00100000000100000000
..........................................................................................................................................................................................................................T---GTCGTGTGTTAG----------------------------------------------TCAATAAAGGA..............................................................................................................................................................................................................................................................................2411.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................CCTTTAGTAAC---TGCAGTGACAC-----------ATC...................................................................................................................................................................................................................2511.00100000000100000000
................CTCGA---CGTGACCCCCATC----CATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TTCGT-ATGCAGAT------------------GC----TGATAT........................................................................................................................................2111.00100000010000000000
AGGAGTAGCCGG--ACCTCGA---CGTGACCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
....GTAGCCGG--ACCTCGA---CGTGACCCCCATC----........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000000000
....GTAGCCGG--ACCTCGA---CGTGACCCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AACCCA------------------GTGTTGCTGTTTGTC-TTGC................................................................2611.00100000000100000000
................................................................................................................................................................................................................................CGTGTGTTAG----------------------------------------------TCAATAAAGGATCCTAATT--------..............................................................................................................................................................................................................................................................2911.00100000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................GGTTTACATTCGT-ATGCAGAT------------------GC----TGA...........................................................................................................................................2611.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTT-AACCCA------------------GTGTTGCTGTTTGTC-T...................................................................2611.00100000000100000000
................................................................................................................................................................................................................T---------T---GTCGTGTGTTAG----------------------------------------------TCAATAAAGGA..............................................................................................................................................................................................................................................................................2511.00100000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCGCTTATCAGCTACCTGTT-AA..........................................................................................................2511.00100000000100000000
............................................................................................................................................................................................................................................................................................................................................................................TCACAA-CCGGTTTACATTCGT-ATGCAGA.......................................................................................................................................................................2811.00100000000100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACAGGCACA------CACACAA1931.00300000300000000000
....................................................................................................................................................................................................................................................................................................................ATTCCTTTAGTAAC---G...........................................................................................................................................................................................................................................1550.20100000001000000000
.....................................................................................................................................................................................................................................GTTAG----------------------------------------------TCAATAAAGA...............................................................................................................................................................................................................................................................................15200.05100000000100000000
droSec2
AGGAGTAGCCGG--ACCTCGA---CGTGACCCTCATC----CATCCGT-----------TAAACATTGTAAGTTCAGTTG-GTGTTCC--GATCAATATGC---TTTTAAGTGCTCCTAGGTTAG--------TTTCTCTTTCGGGTTTTCC-----ATTTTCCAGTGAGAGA-CTCTGGTGCGTGCGGCTCTCCCATTCCCGATTACT---------T---GTCGTGTGTTAG----------------------------------------------TCAATAAAGGATCCTAATT--------AATCCCTTTAGTAAC---TGCAGTGACAC-----------ATTTGC--CATTCG-TTTCACAA-CCGGTTTACATTCGT-ATGCAGAT------------------GC----TGATATTGTTTTCGCGCTTATCAGCTACCTGTT-AACCCA------------------GTGTTGCTGTTTGTC-TTGCTTGTTTACAG-----ACAACACGCGTTAGCAC-----CCCACACAGGCACA------CACACAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTTAGCAC-----CCCACACAGGC................2211.0010010
............................................................................................................AAGTGCTCCTAGGTTAG--------TTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
......................................................................................................................................................................TGAGAGA-CTCTGGTGCGTGCGT....................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTACAG-----ACAACACGCGTT.....................................2111.0010100
........CCGG--ACCTCGA---CGTGACCCTCATC----C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
.......GCCGG--ACCTCGA---CGTGACCCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
dm3
AGGAGTAGCCGG--ACCTCGA---CGTGACCCCCATC----CATCCGTAC--------ATAAACATTGTAAGTTCAGTTG-GTGTTCC--GATCAACATGC---TTTTGAGTGCTTCTGCGTTAG--------TTTCTCTTTCGGTTTTTCA-----ATTTTCCATTGAGAGA-TTCTGGCGCGTGAGGCTCTCCCATTCCCGGTTACT---------T---GTCGTGTGTTAG----------------------------------------------TGAAT-GAGGATCCTAATT--------AATCCCTTTAGTAAC---TGCAGTGACAC-----------ATCTGA--TATTCG-TTTCACAA-CCGGTTTATATATGT-ATGCAGAT------------------GC----TGATATTGTTTTCGCGCTTATCAGCTACCTGTT-AACCCA------------------GTGTTTCTGTTTGTC-TCGCTTGTTTACAG-----ACAACACGCGTTCGCACCCGCCCCCACACACACACA------TACACAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................ATTTTCCATTGAGAGA-TT.................................................................................................................................................................................................................................................................................................................................................................................................1817.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GCCGG--ACCTCGA---CGTGACCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................AGTTCAGTTG-GTGTTCC--GATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCCGCCCCCACACACACACA------TAC....2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GTAGCCGG--ACCTCGA---CGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................A-TTCTGGCGCGTGAGGCTCTCCC.............................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000
........................................................................................................TTTTGAGTGCTTCTGCGTTAG--------T...........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTC-TCGCTTGTTTACAT-----.................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......AGCCGG--ACCTCGA---CGTGACCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TTTGAGTGCTTCTGCGTTAG--------TTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CGTGACCCCCATC----CATCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................GTGTGTTAG----------------------------------------------TGAAT-GAGGATC............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................AATCCCTTTAGTAAC---TGCAGTGACAC-----------A.....................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GACCCCCATC----CATCCGTAC--------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GTAGCCGG--ACCTCGA---CGTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.................................................................................................ATGC---TTTTGAGTGCTTCTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...................................................................................GTTCC--GATCAACATGC---TTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................GTTAG--------TTTCTCTTTCGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CCATC----CATCCGTAC--------ATAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AGGAGTAGCCGG--ACCTCGA---.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTTCGCACCCGCCCC.........................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................ATTTTCCATTGAGAGA-TTCTG..............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTG-GTGTTCC--GATCAACATGC---.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................GGTTTATATATGT-ATGCAGAT------------------GC----TGA...........................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
....GTAGCCGG--ACCTCGA---CGTGACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TAGCCGG--ACCTCGA---CGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.......GCCGG--ACCTCGA---CGTGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
...AGTAGCCGG--ACCTCGA---CGTGACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GG--ACCTCGA---CGTGACCCCCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................ATTGAGAGA-TTCTGGCGCGTG.......................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...........................................................................................ATCAACATGC---TTTTGAGTGCTTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GG--ACCTCGA---CGTGACCCCCATC----CATCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.GGAGTAGCCGG--ACCTCGA---CGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..GAGTAGCCGG--ACCTCGA---CGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................CCCGGTTACT---------T---GTCGTGTGTT.........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AGTAGCCGG--ACCTCGA---CGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACAG-----ACAACACGCGTTCGC..................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................TTGTAAGTTCAGTTG-GTGTTCC--.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
...........................................................TAAACATTGTAAGTTCAGTTG-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
....GTAGCCGG--ACCTCGA---CGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................TTTTCCATTGAGAGA-TTGC...............................................................................................................................................................................................................................................................................................................................................................................................1960.8350000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CCCCCATC----CATCCGTAC--------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AGTAGTGTCCGG--ACCTCGA---CGTGAACACCATC---CCATTCGTGA--------ATTAACCTTGTAAGTTCAGTTCCGAGCTCC--GATCAATATGC---TTTCCAGCGCTTGTAGGTTAG--------CTTCTCTTTCGGGTTTTCC-----ATTTTCCAGTGAGAGAACTCTGGCGCGTGCGGCTCTCCCGTTCT---------------------CTTGTGTGTGCA----------------------------------------------TGAAGAAAGGATTCCAATT--------AATCCTTTTAGTAAC---TGCAGTGACAC-----------ATCTGC--CATTCG-TTTTCCAA-CCGGTTCACATTCGT-ATGCAGAT------------------GC----TGATATTGTTTTCGCGCTTATCAGCTACCTGTT-AGCCCA------------------GTGTGGCTGTTTGTT-TTGCTTGTTTATAG-----ACAACACGCGTTCGCAC---------CACAGACACA------CACAAAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...AGTGTCCGG--ACCTCGA---CGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0021000010
..................................ATC---CCATTCGTGA--------ATTAACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
...................GA---CGTGAACACCATC---CCATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
.........................................................................................................................................................................................................................................A----------------------------------------------TGAAGAAAGGATTCCAATT--------..............................................................................................................................................................................................................................................................2011.0010000010
..............................................................................................................................................................................................................................CTTGTGTGTGCA----------------------------------------------TGAAGAAAGG...............................................................................................................................................................................................................................................................................2211.0010000010
.................................CATC---CCATTCGTGA--------ATTAACCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000
AGTAGTGTCCGG--ACCTCGA---CGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
...................GA---CGTGAACACCATC---CCATTCGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
.GTAGTGTCCGG--ACCTCGA---CGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
...........G--ACCTCGA---CGTGAACACCATC---CC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
droYak3
GG------------ATCTCGA---CGTAACCACCATC----CTTCCGTAA--------ATTGACCTTGTAAGTTCAGTTG-GAGTTCC--GATCAATATGC---TTCCGAGGGCTTCTAGGTTAG--------TTTCTCTTTCGGGTTTTCC-----ATTTTTCAGTGAGA-------GGCGCGTGCGGCTCTCCCGTTC------ATT---------T---GTTGTGTGTGCG----------------------------------------------TGGAGTAAGGATCCCAATT--------AATCCTTTAATTAAC---T--AGTGGAA------AG---CTTCTGC--CATTCG-TTTCGAAA-CCGGCTCGCATTTGA-ATGCAGAT------------------GC----TGATATT-------AGCTTATCAGCTACCTGTT-AACCCA------------------GTGTCGCTGTTTGTT-TTGCTTGTTTATAG-----ACAACACGCGTTCGCAC-----CACATACA----CACACTAAGACACGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.G------------ATCTCGA---CGTAACCACCATC----CTTCCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00202000000000
...................GA---CGTAACCACCATC----CTTCCGTAA--------ATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
..........................................................................................GATCAATATGC---TTCCGAGGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..............................CACCATC----CTTCCGTAA--------ATTGACCTTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
.......................................................................................................................................................................................................C------ATT---------T---GTTGTGTGTGCG----------------------------------------------TGGAGTAAGG...............................................................................................................................................................................................................................................................................2711.00101000000000
..................CGA---CGTAACCACCATC----CTTCCGTAA--------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
...................................................................................GTTCC--GATCAATATGC---TTCCGAGGGCTTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
.................TCGA---CGTAACCACCATC----CTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCTGTTTGTT-TTGCTTGT............................................................2111.00100100000000
.............................CCACCATC----CTTCCGTAA--------ATTGACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
droEug1
GTGATTATCCTT--AGGA--------------------GAACATCGGTAA--------ATAG------TAATTACAGAAA-------------AAAGA----------------TT-CAAGTTAGTTGCTGAGTTT-GGTTTT-GGCTCTCT-----ACTTTCCAGTGAGGGA--ACTGGCGCGTGCGGCTCTCCCGTTGA------GTGAGTGTGTGTGTGCTTG----A----G--TGTGCATCGAAATG------AATAGTT--CCTAAGTGATATGCAAATAAAGGATACCAATA--------AAACCCTTTATGGAC--TTGCAATGACAT-----------TGCTGT--CATTTG-TTTAACAA-CCGGTTTACATACGC-ACACGGCA------------------AT----TGATAAAGTTATCGCTCTTATCAGCTACCTGTT-AACCCT------------------ATGTTGTTGTTTATGGTTACTTGTTTATGC-----ACA-CACACGTGCGGTTTAA--CTCACACAGGCGCA------GAGACAASizeHit CountTotal NormTotal
No Reads
droBia1
GAAGGCATCCTT--GGCTCGA---AGTGACCAGTAT--------CTGAAA--------GTAAAAACTGTGAGTGCAGTTC-CAGTTCC---------------------AGTGCTTTTGGGGTGG--------CCTCTGCTTT-GCTTTTCC-----ATTTTCCAGTGCGAGA-AACTGGCGCGTGCGGCTCTCTTTTT----------------------GGCTG----T----G--TGTGCATTCA-ACT------AATATTTTTTCTGAGTGATATGCAAATAAAGGATCCCCAAT--------AAACCTTTTATTAAC--TTGCAACGACAT-----------TGCCGT--CGTTTG-TTTTACGA-CCGGCTTACATAT-----GCAGAT------------------TC----TGATAACGTTTCCAGGCTTATCAGCTACCTGTT-AACCCT------------------ATGTTGTTTT------TTACTTGTTTGAACACAACACAACACGCGTTTA--------------------CC------CACACAASizeHit CountTotal NormTotal
No Reads
droTak1
GAAAGTATCTTTGG---------------C--------CAACATCGATAAAT------ACAAA------------------------------AAGTATGT---TTTTGAGTGCTTTTAGGTTAG--------TTTCTGTTTTTGGTTTTCC-----ATTTTCCAGTGCGAGA-TATCGGCGCGTGCCGCTCTCTTT------------------------GTTTG----TGTGGGGCATTGCATTGAAGCT------AATATTT--CCCGAGTGCTATGCAAATAAAGGATCCTAATT--------AAACCTTTTATTAACACATTCAATGACAT-----------TGCCGT--CATTTG-TTTTACGA-CCGGTTTACATAT-----GCAGAT------------------TT----TGATAAGGCTTACACGCTTATCAGCTACCTGTT-AACCCCCCACACA--------CATATGTTGTTATTTATTTTTACTTGTTTATAC-----TCAGCACGCGTTTGCA----------CACACACACC------CACCTAASizeHit CountTotal NormTotal
No Reads
droEle1
AAT-----CTATGGGTATTCGCAGTATATTC-TCAATTAAACATCACTAA--------ATAGAGATTGTGAGTGCTGGTG-CAGTCCAAAATAAAATATGC---TTTTGAGTGCTTTT--------------------------GCTCTTCC-----ATTTTCCAGTGAGAAA-AACAAGCGCGTGCGGCTCTCCCGTTTTTG-TTGTT---------T---G-------TGTGTG--TTTGCATTTAAACT------AATATTT--TGTGAGTGGCATGCAAATAAAGGATCCTAATT--------AATCGTTATATTAAT--ATGCAATGACATTGAAAAA---CCATTTT--CATTTG-TTTTACAA-CCGGTTTACATATA--------AT------------------GT----TGATAACACTTTCACGCTTATCAGCTTCCTGTT-AACCCTATT--CA--------CATATGTTGTTGTTTATTTTTACTTGTTTATAT-----ACAACACGCTTTTA--------------------CA------TACACAASizeHit CountTotal NormTotal
No Reads
droRho1
GGGAATACCTATGGATATAGG---CAGTATCCCCAACTCAACATCAGTCG--------ATAGAAATTGTGAGTGCAGTTA-A---------AACAATATTC---TCTTGAGTGCTT-TAGGTTAGTT---TAGTTT---------ATTTTCCAATTTATTTTCCAGTGAGAAA-A-AAGGCGCGTGCGGCTCTCTTA-------------------------AAAG----T----G--TTTGCATCAAAACT------AATATTT--CCTGAGTGGTATGCAAATAAAGTATCCTAATT--------AATCGTTTTGTTAAC--ATGCAATGGCATTGAC--G---CCTCTTT--TTTTTG-TTTTGCAA-CCGGTTTACATATG--------AT------------------GG----TGATAACGCTTTCCCGCTTATCAGCTACCTGTTTAACCCTATG--CA--TACATATGTATGTTGCTCTTTATTTTTACTTGTTTATTC-----ACAACACGCGTTTACC----------------CACA------CACATAASizeHit CountTotal NormTotal
No Reads
droFic1
AGCGATATCCTC--AGCTGG---------C--------TAGCATCAGTAAAAACAACAGTAAAAACTGTGAG---------------------------------------TGGTT-TGGTTTAT--------TTTCTCTTTTCGGTT-TCCA---TAGTTTCGAGAGTGAGA-AAGTGGCGCGTGCGGCTCTCGCGTGTGAA---------TGTGTTTATAGATG----T----G--TGGGCAACAAAACTGTGGCTGCTGTTT--TT--GGGGATATGCAAATAAAGAATCCTCGTT--------CAGCGTTTGATTAAC--TTACGACGACATTGACGAACGCCCGATGA--CATTAA-TTTTACACAGGGGCTTACATTTGT-AC-------------------------------GACAGCGC-TTCGCGCTTATCAGCTACCTGTT-AACTGTATG--CACATGCTTACATATGTTGTTTATTATCTTTGGTTGTGCATAA-----ACAACACGCGTTTG-----------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AGGATTTGGCTT--AATCCAA---CGTGATCGCCAT--------CAGCCAAC------CCAAGAAGTGTGAGTGTGAAAG-GAGG-GG--GATAAACATAAATGAGTTGAGTGTTTTCGGGAAAG--------CATCTCA------TTTCCA-----ACATTCCAGTGACCGC-AATTGGCGCGTGCGGCTCTCACGATGC------GTTT-------T---GATGTGTGCGT--------GTGTAAAAACT------AATATTT--TCTAA-------GCAAATATACTGCACTT-TTAATTGTACAAAAATATTAT------------TAACAT-----------ATGTGCTGTATTCGTTTTTACAA-CCGGCTTACACATGT-ACATAGCTGTGTATGTACAAGTTGTTAT----TGATAAGGCTCTCTCGGTTATCACAAACCTGTT-GGCAT--------------------------T-----TT-TTGTTTGCCTCCAA--ATCAAAACACACGTTGA------------------CACA------CACACACSizeHit CountTotal NormTotal
No Reads
droPer2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGG-TTTTACAACCGGTTTCACATAGGTTCTGC---C------------------CTAACACG----CTATCTCTCGCTTATCATCTACCTGTT-AGGCGA------------------GTATTTT-----------GATACACTCTTG--TCTCGGACACGCGT--------------------GCACC------CATACCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads

Generated: 05/18/2015 at 04:08 PM