ID:

dsi_24855

 Coordinate:

x:9623792-9623941 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.8 -22.2 -22.2

Flybase annnotation

exon [x_9623573_9623791_-]; CDS [x_9623573_9623791_-]; intron [x_9623792_9624576_-]

Repeatable elements

NameClassFamilyStrand
ARS406_DMUnknownUnknown+
SAR_DMSatelliteSatellite-
mature
  1. 3l:10550128-10550145 +
  2. x:4982493-4982510 -
  3. x:5026118-5026135 +
  4. x:5027232-5027249 +
  5. x:5039718-5039735 +
  6. x:5110050-5110067 -
  7. x:7833090-7833107 -
  8. x:8423887-8423904 -
  9. x:9403110-9403127 +
  10. dsi_24855  x:9623894-9623911 -
  11. x:10391592-10391609 +
  12. x:10796795-10796812 -
  13. x:10943481-10943498 -
  14. x:11190933-11190950 -
  15. x:12009254-12009271 -
  16. node_22360:49-66 +
star

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTAGCCATTTTTTGCAAATTTTAATGATGTTACCCCTACAAAAAATGCGAAAATTGACCCAAAAATTAATTGTTCAAAATCCGTCAAAAAGTGATAGGGGTGTTTAGCATTGGTTAATAGCTGCTCAAAACAGTTATTATTTTTTAAATATCTCTTTTTTTTGTCAAGTTATGATACAAATTCCATTCGAAATATTTCAGGCCGCTCTGTCGCCGCAGGGCAGTTGGGGTAAGGACCGGATCGATGAGGG
**************************************************...................(((((((.(((....(((((((....((((((((((((.......(((((((((.......)))))))))....)))))))))))).)))))))....))).))).)))).....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
...........................................AATGCGAAAATTGACCCAAAA.......................................................................................................................................................................................... 21 0 20 2.40 48 48 0 0 0 0 0 0 0 0 0
..............................................GCGAAAATTGACCCAAAA.......................................................................................................................................................................................... 18 0 20 1.30 26 0 0 26 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TGGCGTAACGACCGGA.......... 16 2 14 0.50 7 0 7 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GCCGCTCGGTCGCCGC.................................. 16 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................TAAATCTCTCTTTTTTTGGTGA.................................................................................... 22 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0
......................AATGACGTTACCCCTACT.................................................................................................................................................................................................................. 18 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................GTTGGGGTAAGAACC............. 15 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GAACGACAGGATCGATGAGG. 20 3 4 0.25 1 0 0 0 0 0 0 1 0 0 0
........................................................................TTCCAAATCCGTCAAAAAGTGA............................................................................................................................................................ 22 1 5 0.20 1 0 0 0 0 0 0 0 1 0 0
...........................................AATGCGAAAACTGATCCAAAAATTA...................................................................................................................................................................................... 25 2 13 0.15 2 0 0 0 0 0 2 0 0 0 0
...........TTGCAAATTTTAATGATGTTACCCCT..................................................................................................................................................................................................................... 26 0 9 0.11 1 0 1 0 0 0 0 0 0 0 0
............TGCAAATTTTAATGATGTTACCCCT..................................................................................................................................................................................................................... 25 0 9 0.11 1 0 1 0 0 0 0 0 0 0 0
................................................................................CCGTCAAAAAGTGATAGG........................................................................................................................................................ 18 0 16 0.06 1 0 0 0 1 0 0 0 0 0 0
...............................................................................TCCGTCAAAAAGTGATAGG........................................................................................................................................................ 19 0 16 0.06 1 0 0 0 1 0 0 0 0 0 0
.................................................................................CGTCAAAAAGTGATAGGG....................................................................................................................................................... 18 0 17 0.06 1 0 0 0 1 0 0 0 0 0 0
.......................................AAAAAATGCGAAAATTGACCCAAAA.......................................................................................................................................................................................... 25 0 18 0.06 1 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................GCAGGGCGGTTGGGG..................... 15 1 19 0.05 1 0 0 0 1 0 0 0 0 0 0
........................................AAAAATGCGTAAATTGTCCCAAAACT........................................................................................................................................................................................ 26 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0
........................................AAAAATGCGAAAATTGACCCAA............................................................................................................................................................................................ 22 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
..............................................................................ATCCGTCAAAAAGTGA............................................................................................................................................................ 16 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.........................................AAAATGCGAAAATTGATCCAAAAATT....................................................................................................................................................................................... 26 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
...........................................AATGCGAAAATTGATCCAAAAATT....................................................................................................................................................................................... 24 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
....................................TACAGAAAATACGAAAATTGATCCAAAAA......................................................................................................................................................................................... 29 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.............................................TGCGAAAATTGACCCAAA........................................................................................................................................................................................... 18 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

AATCGGTAAAAAACGTTTAAAATTACTACAATGGGGATGTTTTTTACGCTTTTAACTGGGTTTTTAATTAACAAGTTTTAGGCAGTTTTTCACTATCCCCACAAATCGTAACCAATTATCGACGAGTTTTGTCAATAATAAAAAATTTATAGAGAAAAAAAACAGTTCAATACTATGTTTAAGGTAAGCTTTATAAAGTCCGGCGAGACAGCGGCGTCCCGTCAACCCCATTCCTGGCCTAGCTACTCCC
**************************************************...................(((((((.(((....(((((((....((((((((((((.......(((((((((.......)))))))))....)))))))))))).)))))))....))).))).)))).....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 O002
Head
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR902009
testis
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
...............................TGGGGATGTTTTTTACGCTTTT..................................................................................................................................................................................................... 22 0 1 3.00 3 0 1 0 0 2 0 0 0 0 0 0
..............................TTGGGGATGTTTTTTACGCTTTT..................................................................................................................................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
.................................GGGATGTTTTTTACGCTTTTAACT................................................................................................................................................................................................. 24 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
............................................TACGCTTTTAACTGGGTTT........................................................................................................................................................................................... 19 0 20 1.20 24 0 0 24 0 0 0 0 0 0 0 0
.............................ATTGGGGATGTTTTTTACGCTTTT..................................................................................................................................................................................................... 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
................................GGGGATGTTTTTTACGCTTTT..................................................................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...................................GATGTTTTTTACGCTTTT..................................................................................................................................................................................................... 18 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................AAGTTTTAGGCAGTTTTTCACTAT.......................................................................................................................................................... 24 0 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0
....................................ATGTTTTTTACGCTTTTAACTGGGT............................................................................................................................................................................................. 25 0 18 0.33 6 3 0 0 1 0 0 0 0 0 0 2
...........................................TTACGCTTTTAACTGGGTTTTTAATT..................................................................................................................................................................................... 26 0 10 0.30 3 0 2 0 0 0 0 0 0 0 1 0
......................................GTTTTTTACGCTTTTAACTGGGTTT........................................................................................................................................................................................... 25 0 17 0.29 5 0 3 0 1 0 0 1 0 0 0 0
............................................................................................................................................................................................CTTGATAAAGTCAGGCGA............................................ 18 2 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0
........................................................................AAGTTTTAGGCAGGTTTTCACT............................................................................................................................................................ 22 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................CGACGAGTTTTGTCAA................................................................................................................... 16 0 20 0.25 5 0 5 0 0 0 0 0 0 0 0 0
........................................TTTTTACGCTTTTAACTGGGTTTTT......................................................................................................................................................................................... 25 0 20 0.25 5 0 3 0 0 0 2 0 0 0 0 0
........................................................................AAGTTTTAGGCAGGTTTTCACTTT.......................................................................................................................................................... 24 2 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0
.............CGTTTAAAACTACTACAATCGGGATGT.................................................................................................................................................................................................................. 27 2 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................TACTATGTTCAAGGTAA............................................................... 17 1 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0
...........................................TTACGCTTTTAACTAGGTTTTTAAT...................................................................................................................................................................................... 25 1 12 0.17 2 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CCGCTGCTGGCCTAGCTACT... 20 3 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................TACTATGTTCAAGGTA................................................................ 16 1 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0
......................................GTTTTTTACGCTTTTAACTGGGTTTTT......................................................................................................................................................................................... 27 0 17 0.12 2 0 2 0 0 0 0 0 0 0 0 0
....................................ATGTTTTTTACGCTTTTAACTGGGTTT........................................................................................................................................................................................... 27 0 17 0.12 2 1 0 0 0 0 0 1 0 0 0 0
......................................GTTTTGTACGCTTTTAACTAGGTTT........................................................................................................................................................................................... 25 2 18 0.11 2 0 2 0 0 0 0 0 0 0 0 0
....................................ATGTTTTTTACGCATTTAACTGGGT............................................................................................................................................................................................. 25 1 18 0.11 2 2 0 0 0 0 0 0 0 0 0 0
...........................................TTACGCTTTTGACTAGGTTTTTAATTA.................................................................................................................................................................................... 27 2 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0
....................................ATGTTTTTTACGCTTTTAACTGGGTT............................................................................................................................................................................................ 26 0 18 0.11 2 1 0 0 0 0 0 0 0 0 0 1
............ACGTTTAAAATTACTACAATGGGGA..................................................................................................................................................................................................................... 25 0 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0
..............................................CGCTTTTAACTGGGTTTTT......................................................................................................................................................................................... 19 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
............................................TACGCTTTTAACTGGGTT............................................................................................................................................................................................ 18 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
...............................................GCATTTAACTGGGTT............................................................................................................................................................................................ 15 1 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
...............................TGGGAATGTTTTTTACGCTTTTAACT................................................................................................................................................................................................. 26 1 20 0.10 2 1 1 0 0 0 0 0 0 0 0 0
........................................TTTTTACGCTTTTAACTAGGTTTT.......................................................................................................................................................................................... 24 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
...................................................TTAACTGGGTTTTTAATT..................................................................................................................................................................................... 18 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
........................................TTTTTACGCTTTTAACTAGGTATTT......................................................................................................................................................................................... 25 2 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
...........................................TTACGCTGTTAACTGGGTTTTTAATT..................................................................................................................................................................................... 26 1 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................CTTTATAAAGTGAGGCGA............................................ 18 2 12 0.08 1 0 0 0 0 0 0 0 1 0 0 0
..........................................TTTACGCTTTTAACTGGGTTTTTAAT...................................................................................................................................................................................... 26 0 12 0.08 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................TGGCAATAATACAAAATT....................................................................................................... 18 2 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0
..............................................CGCTTTTAACTGGGTTTTTAAT...................................................................................................................................................................................... 22 0 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0
.............CGTTTAAAATTACTACAATGGGGA..................................................................................................................................................................................................................... 24 0 15 0.07 1 0 0 0 0 0 1 0 0 0 0 0
.............................................AGGCTTTTGACTAGGTTTTTAATT..................................................................................................................................................................................... 24 3 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................AAAAAAATCAGTTCAAT............................................................................... 17 1 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0
............TCGTTTAAAATTACTACAATGGGGA..................................................................................................................................................................................................................... 25 1 16 0.06 1 0 0 0 0 0 1 0 0 0 0 0
..............GTTTAAAATTACTACAATGGGGA..................................................................................................................................................................................................................... 23 0 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0
....................................ATGTTATTTACGCATTTAACTGGGTTT........................................................................................................................................................................................... 27 2 17 0.06 1 0 0 0 0 0 0 1 0 0 0 0
......................................GTTTTTTACGCATTTAACTGGGTTTCT......................................................................................................................................................................................... 27 2 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0
......................................GTTTTTTACGCTTTTAACTGGGT............................................................................................................................................................................................. 23 0 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
......................................GTTTTTTACGCTTTTAACTAGGTTTTT......................................................................................................................................................................................... 27 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
......................................GTTTTTTACGCTTTTAACTGGGTT............................................................................................................................................................................................ 24 0 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
......................................GTTTTATACGCTTTTAACTGGGTTT........................................................................................................................................................................................... 25 1 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0
......................................GTTTTTTACGCTTTTAACTAGGTTT........................................................................................................................................................................................... 25 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
......................................GTTTTTTATGCTTTTAACTGGGTTTT.......................................................................................................................................................................................... 26 1 19 0.05 1 0 0 0 1 0 0 0 0 0 0 0
......................................GTTTTTTACGCTTTTAACTAGGTT............................................................................................................................................................................................ 24 1 19 0.05 1 0 0 0 1 0 0 0 0 0 0 0
....................................ATGTTTTTTATGCTTTTAACTGGGTTT........................................................................................................................................................................................... 27 1 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.....................................TGTTTTTTACGCTTTTAAC.................................................................................................................................................................................................. 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...........................................TTACGCTTTTAACTGGGTTTTT......................................................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..............................................CGCTTTTAACTGGGT............................................................................................................................................................................................. 15 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
........................................TTTTTACGCTTTTAACTAGGTTTTT......................................................................................................................................................................................... 25 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
..............................................CGCTTTTAACTGGGTTTT.......................................................................................................................................................................................... 18 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................CAGCATTATGAAGTCCGG............................................... 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATCGACGAGTTTTATCAATAA................................................................................................................ 21 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...........................................ATACGCTTTTAACTGGGTTTTT......................................................................................................................................................................................... 22 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...............................TGGGAATGTTTTTTACGCTTTTAAC.................................................................................................................................................................................................. 25 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
........................................TTTTTACGCTTTTAAC.................................................................................................................................................................................................. 16 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...............................................GCATTTAACTGGGTTTT.......................................................................................................................................................................................... 17 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
............................................TACGCTTTTAACTGGGTTTTT......................................................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................CGACGAGTTTTGTCA.................................................................................................................... 15 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
......................................GTTTTTTACGCTTTTAACTGAGTTT........................................................................................................................................................................................... 25 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
........................................TTTTTACGCTTTTAACTAGGTTT........................................................................................................................................................................................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
..........................................TTTACGCTTTTAACTGGGTTT........................................................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................TTTTGTCAGTAATAAAAAC......................................................................................................... 19 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:9623742-9623991 - dsi_24855 T-TAG-CCATTTTTTGCAAATTTTAATGAT-----GTTACCCC-TACAAAAAATGCG-----------A-AAATTGA----------CCCAAAAA--TT-AAT--------------------------------------------------------------------------------------------TGTTCAAAATCCGTCAAAAAGTGATAGGGGTGTTTAGC-ATTGGTTAATAGCTGCTCAAAACAGTTATTATTTTTTAAATATCTCT------------TT----------------------------------TTTTTGTCAAGTTATGATACAAAT--TCCATTC-------------------------------------------G--AAA-TAT--------TT-----CAGGCCGCTCTGTCGCCGCAGGGCAGTTGGGGTAAGGACCGGATCGATGAGGG
droSec2 scaffold_15:843986-844236 - T-TAG-CCATTTTTTGCAAATTTTGATGAT-----GTTACCCCTTACAAAAAATGCG-----------A-AAATTGA----------CCCAAAAA--AG-TAT--------------------------------------------------------------------------------------------TTCCCAAAATACGTCAAAAAGTGATAGGGGTGTTTAGC-ACTGGTAATTATCTGCTCAAAACAGTTATTCTTTCGTCTGTATGACA------------AT----------------------------------TTTCAGCGAAGTTATGATACAAAT--TCCATTC-------------------------------------------G--AAT-AAT--------TT-----CAGGCCGCTCTGTCACCGCAGGGCAGTTGGGGTAAGGACCGGATCGATGAGGG
dm3 chrX:10133881-10134133 - T-TGG-CAATTTTTTGCAAATTTTGATGAT-----GTTACCCCTTACAAAAAATGCG-----------A-AAATTGA----------CCAAAAAA--TT-AAA--------------------------------------------------------------------------------------------TTTCCTAAATTCTTCAAAAAGTGATAAGACTGTTTAGC-ATTGGTAATTAGCTGCTCAAAACAGTTATTATTTTTTAAATATGTCT------------TT----------------------------------TTTTAGTCTAGTTATGATAAAAAAAATCCATTC-------------------------------------------G--TAT-TCT--------TT-----CAGGCCGCTCTGTCGCCGCAGGGCAGTTGGGGTAAGGACCGGATCGATGAGGG
droEre2 scaffold_4690:4988678-4988981 + T-TTG-CCATTTTTTGCAAATTTTGATGAT-----GTTACCCCTTACAAAAAATGCG-----------A-AAATTTG----------CCCAACAA--TT-TAT--------------------------------------------------------------------------------------------TTTCTAAAATGCATTAGAAAGAGATAGGGATGGTTAGC-ATAGGTAATTGGCTGCTCATACCTGTTACTGTTTTAGATCTACGACC------------AT----------------------------------TTTTAGCCAAGTTATGATGAAGAA--CGAGTTCTTTGAATCGTATTCTTGAAGAAATCGTATTCCTGGCAAAAGTCCTAAAA-TATGTGAATCTTT-----CAGGCCGCTCTGTCGCCGCAGGGCAGTTGGGGTAAGGACCGGATCGACGAGGG
droYak3 X:6034268-6034468 - T-TTC-AAATTCTTTGCAAATTTTGATGAT-----GTTACCCCTTACAAAAAATGCG-----------A-AAATTTG----------GCCAAAAA--TT-ATT--------------------------------------------------------------------------------------------TTTACAAAGTCGGTCAAAAAGTGATTTGGTTGGTTAGT-ATTGGTAATTAGGAGTAAAAAACTGTAATTCTTTTAACTTTCTGACC------------AT----------------------------------TTTTAGCCAAGTTATAACGAAAAT--ATCAATC-------------------------------------------G-TAAA-TAT--------TG-----CA---------------------------------------------------
droEug1 scf7180000409797:2180170-2180379 + T-TGG-CCATTTTTTGAAAATTTTGATGAT-----GGTACCCCTTATCAAAAATGCG-----------A-AATTTAT----------CCGAAAAT--TA-ATT--------------------------------------------------------------------------------------------TTCTCAAAATCCATAAACGTGGGATGGGGGTGGTAAGT-GTTGGTCATTAGCAGCACAAAACAGTCGTTCTTATGACTGTGAGTCT------------TG----------------------------------TTTTGACCGAGCTAGAGCTAAAAA--ACCGCCA-------------------------------------------G--TAA-TAT--------TG-----CAAGT--TTCTGTC---------------------------------------
droBia1 scf7180000302075:1299104-1299312 + T-TGA-CCATTTTTTACAAAAATTGACGAT-----GCTTCCCCTTGTAAGA-ATGTC-----------A-AAATTTG----------AGAAATAT--TT-TAG--------------------------------------------------------------------------------------------TTTCCAGAATCAGCAAAACAATGACTGGGATTAATGGT-CTAGCTTGTTAGATGTCCAAAACAGTGTGTCCTTTAGGTATCTGAAC------------CC----------------------------------TTTTGACCAAGTTACAGAAATAAAT-ATCAAAG----------------------------------------------AAA-AAT--------AT-----CG-----CTTTTTCGCC------------------------------------
droTak1 scf7180000415381:345317-345517 - T-TTG-CCATTTTTCGCAAAAAATCATGAT-----GTTACCCCTTATCAAAAATGTG-----------A-AAATTGG----------CGAAA-AT--TTTATT--------------------------------------------------------------------------------------------TTTCCAAAATCACACGGAAAGT-TTACTGATATTAATTATTAGGTTGTTAGCTGCCCAAAACAGTACGCCTTTTTGATTTGGGATC------------AT----------------------------------TTTTTCCCAAGTTATAGCAAAAAA--TCGATTA-------------------------------------------A-GAAA-TAT--------TT-----CA---------------------------------------------------
droEle1 scf7180000490728:164237-164429 - T-TTG-AAAATTTTTACAAAAAATGATGAT-----GTTACCCCTTATAAAAAATACG-----------A-AAGTTTA----------TCAAAAAT--TT-TAT--------------------------------------------------------------------------------------------TTCTTGAAATCATTAAAAAAGTGATGAGGTTTGTTTAT-TTAGATCTTTAGCTGCTCAAAACAGTCATTCTTTTGGAAAACGGTCG------------CC----------------------------------ATTTGGATAAGTTTTAACCAAAAA--ACCGTAT-------------------------------------------A--AAA------------------------------------------------------------------------
droRho1 scf7180000780084:294694-294892 - G-TAG---ATTTTTCGTAAAA-ATAATGAT-----GTAACCTCTTATAAAAAACACG-----------A-AAATCGG----------TGAAAAAA--TA-AAT--------------------------------------------------------------------------------------------TTGTCTAAATCGAACATAAA----------TGAATAGT-TTTGGTCTTTAGCTGCACAAAACAGTCATTCTTTTGGCTGTGCGTAT------------TA----------------------------------TTTTGTTGAAGTTATGACAAAAAA--GCCATTA-------------------------------------------A--AAA-TGT--------GTAATTTAGGGCCATT--------------------------------------------
droFic1 scf7180000454105:1936052-1936250 - T-TGG-CCATTTTTCGCAAAAAATGATGAT-----GTAACCCCTTACCAAAAATGCG-----------ACAAAATGG----------CCAAAAAA--TG-AAT--------------------------------------------------------------------------------------------TTTTCGAAGTCTGCCAAAAAGTGATTGGGGTCGTTAGC-CTAGGTGCTAAGCTGCAAAAAACAGTCATTCTTTTAGTTCTATGACC------------CT----------------------------------TTTTGGCTGAGATAGAGCTAGAAA--GCCCCA-----------------------------------------------AAA-CAT--------CT-----CA---------------------------------------------------
droKik1 scf7180000301874:2412-2587 - T-TGG-CCATTTTT-GCGAAATTTGATAAGG----GTTACCCCTTA--AAAAAAGCA-----------A-AAA-TGG----------CCAAAAAT--TTTGAT--------------------------------------------------------------------------------------------TTTTTAAAATT-TTAAATTTGGTATGCAGTTTTTTTAA-ATTAATAAAAACTAACACAAAACTGCTTTCCGAATCGAAATTAATGC------------AT----------------------------------TTTTGGCTTAGTTATGATATA-------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13117:2857005-2857183 + T-TTC-CCATTTTTTATCAATT-TTATGAT-----GTTACCCCTTTGGAAAATCTTA-----------A-AAAATGACTTAAATATGA--AAAAATGT--GAC-----------------------------------------------------------------------------------------------------TTTTAAAGGTTTTGATCTTAAAAACTAGT-ATTTAAAGTTCTGATTAAAAAACTGTTTTCTTTTTATGAATAGGATT------------TA----------------------------------AATTGACTGAGTTATGATTTAA------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396547:1225145-1225348 + T-GAC-CAACTTTTGGCCAAAATCA-------------------TTAAAAAATCGCA-----------A-AAAATGG----------GTCCAAAT--TT-TTTATCCCAGGTTTTAATCGAAAAGGATGCCGCCAGAAGAGCTAAGATCG-----------------------------------------------------------------------GGAGTGTATA---------------------ACAGTTGTGGATCTGCTGAGTATTAGTCGAGTTATGAATATTTTTCCATTAAGAAATGGGAAAAAGTTAAAATGCATTTTC------------------------------------------------------------------------T--GAA-TAT--------TT----------------------------------------------------------
dp5 Unknown_group_658:5491-5557 - T-TCTATTACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------TT-----CAGGCTGCTCTTTCGCCGCAAGGCAGTTGGGGCAAGGACCGTATCGAGGAGGG
droPer2 scaffold_3511:680-868 + T-TTA-TCATTATTTCTTAATTTTAAAGAT-----TAAAATTAATA------TTCTA-----------A-TAAATAATTAAAATATAATAAATAA--TT-TAA--------------------------------------------------------------------------------------------TTTATAAAATAAATTATAACACATT-----T--------TTTAATAATTGCTAATTCTAAGCATATATTTA-TTAAATTTATTTAT------------TA----------------------------------TTTTAAAAAATTTATTTTATAGCT--TAT--------------------------------------------CCCATAAAA-TAT--------T-----------------------------------------------------------
droWil2 scf2_1100000006624:666-865 + T-TGG-CCATGTTTTACAAGTTTTAATGACTCCCCTCATCCCCTTACAAAAAATGCG-----------T-AAATTGA----------CCCAA-AA--CT-AAT--------------------------------------------------------------------------------------------TTCCCTAAATA-TTCAAAAAGTAATAGGGATCGTTAGC-GCTGGTAATTAGTTTCTCAAAACAGTTATTCTTACTTCTATAAGACA------------AT----------------------------------TTTTAGCGAAGTTATGACGAAAGT--TCCGTTT-------------------------------------------G--TAAATAT--------------------------------------------------------------------
droVir3 scaffold_13049:3544744-3544850 - T-TAC-CCACTATTTTGGCATAC------------------------------CCGA-----------C-TGAATTACTT----------------------------------------------------------------TGATGGAGCGGTTGTTTTAGAGTATCCTTATAAGTTAATCTCAAAATTGTTTGTTAAAAATCCGCTAAAGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:17057814-17057951 + T-CGA-TTATTTCTTAAATTTTT-----------------TTCCCACAAGAAATTTATGATTCGTCCCAAAAAACAAGAATAATAAGA--ATAAGTAT--GTT-----------------------------------------------------T--------------------------------------TTATTAAAATAATAAAGATC---------------------------------------------------------------GCT------------TT----------------------------------TTTTCATTAATTTAAGGCACAAAT--TACATTT-------------------------------------------G-----------------------------------------------------------------------------
droGri2 scaffold_15203:10604363-10604484 + AATTG-CTATTTTTTTTAGTTTCT-----------------TTCTA-----------------------------------------------------------------------------------------------------------------------------TTATTAATTAATATCAATGT----------------------------------------GT-ATTGTTGTATTGCTGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG-----CAGGCTGCACTATCGCCGCAGGGTAGCTGGGGCAAGGATCGCATTGAGGAGGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
T-TAG-CCATTTTTTGCAAATTTTAATGAT-----GTTACCCC-TACAAAAAATGCG-----------A-AAATTGA----------CCCAAAAA--TT-AAT--------------------------------------------------------------------------------------------TGTTCAAAATCCGTCAAAAAGTGATAGGGGTGTTTAGC-ATTGGTTAATAGCTGCTCAAAACAGTTATTATTTTTTAAATATCTCT------------TT----------------------------------TTTTTGTCAAGTTATGATACAAAT--TCCATTC-------------------------------------------G--AAA-TAT--------TT-----CAGGCCGCTCTGTCGCCGCAGGGCAGTTGGGGTAAGGACCGGATCGATGAGGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................AATGCG-----------A-AAATTGA----------CCCAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................21202.4048000004800000000000
......................................................GCG-----------A-AAATTGA----------CCCAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................18201.3026000026000000000000
.............TTGCAAATTTTAATGAT-----GTTACCCC-T......................................................................................................................................................................................................................................................................................................................................................................................................................................................2690.11100000000010000000
..............TGCAAATTTTAATGAT-----GTTACCCC-T......................................................................................................................................................................................................................................................................................................................................................................................................................................................2590.11100000000010000000
.............................................................................................................................................................................................................CCGTCAAAAAGTGATAGG....................................................................................................................................................................................................................................................................18160.06100000000001000000
............................................................................................................................................................................................................TCCGTCAAAAAGTGATAGG....................................................................................................................................................................................................................................................................19160.06100000000001000000
..............................................................................................................................................................................................................CGTCAAAAAGTGATAGGG...................................................................................................................................................................................................................................................................18170.06100000000001000000
...............................................AAAAAATGCG-----------A-AAATTGA----------CCCAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................25180.06100010000000000000
................................................AAAAATGCG-----------A-AAATTGA----------CCCAA.......................................................................................................................................................................................................................................................................................................................................................................................................22200.05100000000100000000
...........................................................................................................................................................................................................ATCCGTCAAAAAGTGA........................................................................................................................................................................................................................................................................16200.05100000000001000000
.....................................................TGCG-----------A-AAATTGA----------CCCAAA......................................................................................................................................................................................................................................................................................................................................................................................................18200.05100000000001000000
droSec2
T-TAG-CCATTTTTTGCAAATTTTGATGAT-----GTTACCCCTTACAAAAAATGCG-----------A-AAATTGA----------CCCAAAAA--AG-TAT--------------------------------------------------------------------------------------------TTCCCAAAATACGTCAAAAAGTGATAGGGGTGTTTAGC-ACTGGTAATTATCTGCTCAAAACAGTTATTCTTTCGTCTGTATGACA------------AT----------------------------------TTTCAGCGAAGTTATGATACAAAT--TCCATTC-------------------------------------------G--AAT-AAT--------TT-----CAGGCCGCTCTGTCACCGCAGGGCAGTTGGGGTAAGGACCGGATCGATGAGGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGTTGGGGTAAGGACCG............2011.0011000
................................................AAAAATGCG-----------A-AAATTGA----------CCCA........................................................................................................................................................................................................................................................................................................................................................................................................21170.1220002
..............TGCAAATTTTGATGAT-----GTTACCCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0511000
dm3
T-TGG-CAATTTTTTGCAAATTTTGATGAT-----GTTACCCCTTACAAAAAATGCG-----------A-AAATTGA----------CCAAAAAA--TT-AAA--------------------------------------------------------------------------------------------TTTCCTAAATTCTTCAAAAAGTGATAAGACTGTTTAGC-ATTGGTAATTAGCTGCTCAAAACAGTTATTATTTTTTAAATATGTCT------------TT----------------------------------TTTTAGTCTAGTTATGATAAAAAAAATCCATTC-------------------------------------------G--TAT-TCT--------TT-----CAGGCCGCTCTGTCGCCGCAGGGCAGTTGGGGTAAGGACCGGATCGATGAGGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................AATGCG-----------A-AAATTGA----------CCAAAAAA--..................................................................................................................................................................................................................................................................................................................................................................................................2238.33250000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000440000000209020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000001000000000000000000000000000
..................................................AAATGCG-----------A-AAATTGA----------CCAAAAAA--..................................................................................................................................................................................................................................................................................................................................................................................................2336.33190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000001000000000000000000000000000000000000000000000000110100020004040000001000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000010000000000000000000000000000000010000000000
................................................AAAAATGCG-----------A-AAATTGA----------CCAAA.......................................................................................................................................................................................................................................................................................................................................................................................................2244.25170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100240100000000001000000000000000000000000000000000211000000000000000000001000000000000000000000000000000000100001000000000000000000000000000000000010000000000
..................................................AAATGCG-----------A-AAATTGA----------CCAAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................2243.50140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130400010001130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................AAATGCG-----------A-AAATTGA----------CCAAA.......................................................................................................................................................................................................................................................................................................................................................................................................2043.50140000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000011000050000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000000000000000000000000000000000000000
...................................................AATGCG-----------A-AAATTGA----------CCAAAA......................................................................................................................................................................................................................................................................................................................................................................................................2043.50140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000001000000000000000000000000000000000000000000000000410000000202000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000010000001000000000000000000000000000000000000000000000
...................................................AATGCG-----------A-AAATTGA----------CCAAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................2143.25130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000320000000002030000001000000000000000000000000000000000000000000000000000000001000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TTGGTAATTAGCTGCTCAAAACAGT...............................................................................................................................................................................................................................25202.3046000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000017242000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................TGTTTAGC-ATTGGTAATTAGCTGC.........................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
T-TGG-CAATTTTTTGCAAATTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2332.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000020101000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
..................................................AAATGCG-----------A-AAATTGA----------CCAA........................................................................................................................................................................................................................................................................................................................................................................................................1942.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000330000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AAAAATGCG-----------A-AAATTGA----------CCAA........................................................................................................................................................................................................................................................................................................................................................................................................2141.7570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100010100000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000010
................................................AAAAATGCG-----------A-AAATTGA----------CCA.........................................................................................................................................................................................................................................................................................................................................................................................................2041.5060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000100000000000000000000000000100000000000000000000000
.................................................AAAATGCG-----------A-AAATTGA----------CCAAA.......................................................................................................................................................................................................................................................................................................................................................................................................2141.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020
...................................................AATGCG-----------A-AAATTGA----------CCAAA.......................................................................................................................................................................................................................................................................................................................................................................................................1941.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000002020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................AAAATGCG-----------A-AAATTGA----------CCAAAA......................................................................................................................................................................................................................................................................................................................................................................................................2241.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000001000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGTAAGGACCGGATCGATGAGGG2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
................................................AAAAATGCG-----------A-AAATTGA----------CCAAAA......................................................................................................................................................................................................................................................................................................................................................................................................2341.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000100000000000000000000000000000000000000000000
..................................................AAATGCG-----------A-AAATTGA----------CCAAAA......................................................................................................................................................................................................................................................................................................................................................................................................2141.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCGCCGCAGGGCAGTT.........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................AGACTGTTTAGC-ATTGGTAATT...............................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................TTTAGTCTAGTTATGATA.......................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGCAGGGCAGTTGGGGTAAGGAC..............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCCGCAGGGCAGTTGGGGTA...................2211.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................AAAATGCG-----------A-AAATTGA----------CCAAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................2340.7530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................AAATGCG-----------A-AAATTGA----------CCA.........................................................................................................................................................................................................................................................................................................................................................................................................1840.7530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TGG-CAATTTTTTGCAAATTTTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2330.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................CCCTTACAAAAAATGCG-----------A-AAATTGA----------............................................................................................................................................................................................................................................................................................................................................................................................................25200.651300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................AATGCG-----------A-AAATTGA----------CCAA........................................................................................................................................................................................................................................................................................................................................................................................................1840.5020000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
........................................CCCTTACAAAAAATGCG-----------A-AAATTGA----------C...........................................................................................................................................................................................................................................................................................................................................................................................................26200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TTAGC-ATTGGTAATTAGCTGC.........................................................................................................................................................................................................................................21200.3570000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000
.................................................AAAATGCG-----------A-AAATTGA----------CCAAAAAA--..................................................................................................................................................................................................................................................................................................................................................................................................2430.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................ATGCG-----------A-AAATTGA----------CCAAAAAA--TT-A..............................................................................................................................................................................................................................................................................................................................................................................................2430.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TGG-CAATTTTTTGCAAATTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................AAATGCG-----------A-AAATTGA----------CCAAAAAA--T.................................................................................................................................................................................................................................................................................................................................................................................................2430.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................CCCTTACAAAAAATGCG-----------A-AAATTGA----------CC..........................................................................................................................................................................................................................................................................................................................................................................................................27200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AAAAATGCG-----------A-AAATTGA----------CCAAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................2440.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
..................................................AAATGCG-----------A-AAATTGA----------CCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................2040.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TTACAAAAAATGCG-----------A-AAATTGA----------CCAATT......................................................................................................................................................................................................................................................................................................................................................................................................2840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................ATGCG-----------A-AAATTGA----------CCAAAA......................................................................................................................................................................................................................................................................................................................................................................................................1940.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TTACAAAAAATGCG-----------A-AAATTGA----------CC..........................................................................................................................................................................................................................................................................................................................................................................................................24200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AAAAATGCG-----------A-AAATTGA----------CCAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................2440.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................ATTGGTAATTAGCTGCTCAAG....................................................................................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000
.......................TGATGAT-----GTTACCCCTTACAAAAAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................27200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................AAATGCG-----------A-AAATTGA----------CCAAAAAA--A.................................................................................................................................................................................................................................................................................................................................................................................................2450.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................AATGCG-----------A-AAATTGA----------CCAAAAAA--A.................................................................................................................................................................................................................................................................................................................................................................................................2350.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TTTTTTGCAAATTTTGATGAT-----GTTACCCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................CCTAAATTCTTCAAAAAGTGAT.......................................................................................................................................................................................................................................................................22180.1120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
..........................TGAT-----GTTACCCCTTACAAAAAATGCG-----------A-.............................................................................................................................................................................................................................................................................................................................................................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CTTACAAAAAATGCG-----------A-AAATTGA----------CC..........................................................................................................................................................................................................................................................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TTGGTAATTAGCTGCTCAAAAC..................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............TTGCAAATTTTGATGAT-----GTTACCCCTTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TGCAAATTTTGATGAT-----GTTACCCCTTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TAGC-ATTGGTAATTAGCTGCTCAAA....................................................................................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
T-TTG-CCATTTTTTGCAAATTTTGATGAT-----GTTACCCCTTACAAAAAATGCG-----------A-AAATTTG----------CCCAACAA--TT-TAT--------------------------------------------------------------------------------------------TTTCTAAAATGCATTAGAAAGAGATAGGGATGGTTAGC-ATAGGTAATTGGCTGCTCATACCTGTTACTGTTTTAGATCTACGACC------------AT----------------------------------TTTTAGCCAAGTTATGATGAAGAA--CGAGTTCTTTGAATCGTATTCTTGAAGAAATCGTATTCCTGGCAAAAGTCCTAAAA-TATGTGAATCTTT-----CAGGCCGCTCTGTCGCCGCAGGGCAGTTGGGGTAAGGACCGGATCGACGAGGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
T-TTC-AAATTCTTTGCAAATTTTGATGAT-----GTTACCCCTTACAAAAAATGCG-----------A-AAATTTG----------GCCAAAAA--TT-ATT--------------------------------------------------------------------------------------------TTTACAAAGTCGGTCAAAAAGTGATTTGGTTGGTTAGT-ATTGGTAATTAGGAGTAAAAAACTGTAATTCTTTTAACTTTCTGACC------------AT----------------------------------TTTTAGCCAAGTTATAACGAAAAT--ATCAATC-------------------------------------------G-TAAA-TAT--------TG-----CA---------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................ATTTGGTTGGTTAGT-ATTGGT...................................................................................................................................................................................................................................................21200.05100000010000
................................................................................................................................................................................................................................TTGGTTAGT-ATTGGTAATTAGGAGT.........................................................................................................................................................................................................................................25200.05100100000000
droEug1
T-TGG-CCATTTTTTGAAAATTTTGATGAT-----GGTACCCCTTATCAAAAATGCG-----------A-AATTTAT----------CCGAAAAT--TA-ATT--------------------------------------------------------------------------------------------TTCTCAAAATCCATAAACGTGGGATGGGGGTGGTAAGT-GTTGGTCATTAGCAGCACAAAACAGTCGTTCTTATGACTGTGAGTCT------------TG----------------------------------TTTTGACCGAGCTAGAGCTAAAAA--ACCGCCA-------------------------------------------G--TAA-TAT--------TG-----CAAGT--TTCTGTC---------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
T-TGA-CCATTTTTTACAAAAATTGACGAT-----GCTTCCCCTTGTAAGA-ATGTC-----------A-AAATTTG----------AGAAATAT--TT-TAG--------------------------------------------------------------------------------------------TTTCCAGAATCAGCAAAACAATGACTGGGATTAATGGT-CTAGCTTGTTAGATGTCCAAAACAGTGTGTCCTTTAGGTATCTGAAC------------CC----------------------------------TTTTGACCAAGTTACAGAAATAAAT-ATCAAAG----------------------------------------------AAA-AAT--------AT-----CG-----CTTTTTCGCC------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
T-TTG-CCATTTTTCGCAAAAAATCATGAT-----GTTACCCCTTATCAAAAATGTG-----------A-AAATTGG----------CGAAA-AT--TTTATT--------------------------------------------------------------------------------------------TTTCCAAAATCACACGGAAAGT-TTACTGATATTAATTATTAGGTTGTTAGCTGCCCAAAACAGTACGCCTTTTTGATTTGGGATC------------AT----------------------------------TTTTTCCCAAGTTATAGCAAAAAA--TCGATTA-------------------------------------------A-GAAA-TAT--------TT-----CA---------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
T-TTG-AAAATTTTTACAAAAAATGATGAT-----GTTACCCCTTATAAAAAATACG-----------A-AAGTTTA----------TCAAAAAT--TT-TAT--------------------------------------------------------------------------------------------TTCTTGAAATCATTAAAAAAGTGATGAGGTTTGTTTAT-TTAGATCTTTAGCTGCTCAAAACAGTCATTCTTTTGGAAAACGGTCG------------CC----------------------------------ATTTGGATAAGTTTTAACCAAAAA--ACCGTAT-------------------------------------------A--AAA------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
G-TAG---ATTTTTCGTAAAA-ATAATGAT-----GTAACCTCTTATAAAAAACACG-----------A-AAATCGG----------TGAAAAAA--TA-AAT--------------------------------------------------------------------------------------------TTGTCTAAATCGAACATAAA----------TGAATAGT-TTTGGTCTTTAGCTGCACAAAACAGTCATTCTTTTGGCTGTGCGTAT------------TA----------------------------------TTTTGTTGAAGTTATGACAAAAAA--GCCATTA-------------------------------------------A--AAA-TGT--------GTAATTTAGGGCCATT--------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
T-TGG-CCATTTTTCGCAAAAAATGATGAT-----GTAACCCCTTACCAAAAATGCG-----------ACAAAATGG----------CCAAAAAA--TG-AAT--------------------------------------------------------------------------------------------TTTTCGAAGTCTGCCAAAAAGTGATTGGGGTCGTTAGC-CTAGGTGCTAAGCTGCAAAAAACAGTCATTCTTTTAGTTCTATGACC------------CT----------------------------------TTTTGGCTGAGATAGAGCTAGAAA--GCCCCA-----------------------------------------------AAA-CAT--------CT-----CA---------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
T-TGG-CCATTTTT-GCGAAATTTGATAAGG----GTTACCCCTTA--AAAAAAGCA-----------A-AAA-TGG----------CCAAAAAT--TTTGAT--------------------------------------------------------------------------------------------TTTTTAAAATT-TTAAATTTGGTATGCAGTTTTTTTAA-ATTAATAAAAACTAACACAAAACTGCTTTCCGAATCGAAATTAATGC------------AT----------------------------------TTTTGGCTTAGTTATGATATA-------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
T-TTC-CCATTTTTTATCAATT-TTATGAT-----GTTACCCCTTTGGAAAATCTTA-----------A-AAAATGACTTAAATATGA--AAAAATGT--GAC-----------------------------------------------------------------------------------------------------TTTTAAAGGTTTTGATCTTAAAAACTAGT-ATTTAAAGTTCTGATTAAAAAACTGTTTTCTTTTTATGAATAGGATT------------TA----------------------------------AATTGACTGAGTTATGATTTAA------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
T-GAC-CAACTTTTGGCCAAAATCA-------------------TTAAAAAATCGCA-----------A-AAAATGG----------GTCCAAAT--TT-TTTATCCCAGGTTTTAATCGAAAAGGATGCCGCCAGAAGAGCTAAGATCG-----------------------------------------------------------------------GGAGTGTATA---------------------ACAGTTGTGGATCTGCTGAGTATTAGTCGAGTTATGAATATTTTTCCATTAAGAAATGGGAAAAAGTTAAAATGCATTTTC------------------------------------------------------------------------T--GAA-TAT--------TT----------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
T-TCTATTACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------TT-----CAGGCTGCTCTTTCGCCGCAAGGCAGTTGGGGCAAGGACCGTATCGAGGAGGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
T-TTA-TCATTATTTCTTAATTTTAAAGAT-----TAAAATTAATA------TTCTA-----------A-TAAATAATTAAAATATAATAAATAA--TT-TAA--------------------------------------------------------------------------------------------TTTATAAAATAAATTATAACACATT-----T--------TTTAATAATTGCTAATTCTAAGCATATATTTA-TTAAATTTATTTAT------------TA----------------------------------TTTTAAAAAATTTATTTTATAGCT--TAT--------------------------------------------CCCATAAAA-TAT--------T-----------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
T-TGG-CCATGTTTTACAAGTTTTAATGACTCCCCTCATCCCCTTACAAAAAATGCG-----------T-AAATTGA----------CCCAA-AA--CT-AAT--------------------------------------------------------------------------------------------TTCCCTAAATA-TTCAAAAAGTAATAGGGATCGTTAGC-GCTGGTAATTAGTTTCTCAAAACAGTTATTCTTACTTCTATAAGACA------------AT----------------------------------TTTTAGCGAAGTTATGACGAAAGT--TCCGTTT-------------------------------------------G--TAAATAT--------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................CTGGTAATTAGTTTCTCAA.....................................................................................................................................................................................................................................1911.00100010
..................................................................................................................................................................................................................................................................................TAAGACA------------AT----------------------------------TTTTAGCGAAGT..............................................................................................................................................2111.00100010
...........................................................................................................................................................................................................................................CTGGTAATTAGTTTCTCAAAACAGT...............................................................................................................................................................................................................................2511.00100010
droVir3
T-TAC-CCACTATTTTGGCATAC------------------------------CCGA-----------C-TGAATTACTT----------------------------------------------------------------TGATGGAGCGGTTGTTTTAGAGTATCCTTATAAGTTAATCTCAAAATTGTTTGTTAAAAATCCGCTAAAGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................GATGGAGCGGTTGTTTTAGAGTATC.........................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000100000000000000000000000000000
.........................................................................ATTACTT----------------------------------------------------------------TGATGGAGCGGTTG.....................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000001000000000000000000000000000000000000000000
droMoj3
T-CGA-TTATTTCTTAAATTTTT-----------------TTCCCACAAGAAATTTATGATTCGTCCCAAAAAACAAGAATAATAAGA--ATAAGTAT--GTT-----------------------------------------------------T--------------------------------------TTATTAAAATAATAAAGATC---------------------------------------------------------------GCT------------TT----------------------------------TTTTCATTAATTTAAGGCACAAAT--TACATTT-------------------------------------------G-----------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................AACAAGAATAATAAGA--ATAAGTAT--GTT-----------------------------------------------------.......................................................................................................................................................................................................................................................................................................................................2711.001000001
droGri2
AATTG-CTATTTTTTTTAGTTTCT-----------------TTCTA-----------------------------------------------------------------------------------------------------------------------------TTATTAATTAATATCAATGT----------------------------------------GT-ATTGTTGTATTGCTGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG-----CAGGCTGCACTATCGCCGCAGGGTAGCTGGGGCAAGGATCGCATTGAGGAGGGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 04:18 AM