ID:

dsi_24853

Coordinate:

2r:4839592-4839741 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-14.2	-13.9	-13.8

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

CTTTTGCCAGAAGTAAATGCCATTTTACTAAAAAAATTTTTAATAAATTTTGTTTAATAAAAATTGTAAGTACAAAACTAAGAAAAATTATATCGAAAATGTCTCTCCCGAACAGAGTAGTAAAAACCCAATACAGCATTCTAATATTAAGACCTACTGCTAGTATCTCTTCAATCCTAGATATAATTTTCATATATCAGGTAATCCTTAATTTCTCGTCTCCTCAACAACCTCGACATTATCAAAAAAT ************************************************.............((((....))))........(((((((((((....((..((((.......))))..)).........((((((((.(((.......))).....)))).)))).............)))))))))))..........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	M025 embryo
.........................................................................................................................................................................................................TAATCTTTAATTACTCGGCTCCT..........................	23	3	1	1.00	1	1	0
.........................................................................................................................................................CTACTGCTAGTATCTCTTCAATCCT........................................................................	25	0	1	1.00	1	0	1
.......................................................................................................TCTCCTGGACACAGTAGTA................................................................................................................................	19	3	10	0.10	1	1	0
........................................................................................................................................................................................AATTTTCATGTATCAGATTA..............................................	20	3	20	0.05	1	1	0

Anti-sense strand reads

GAAAACGGTCTTCATTTACGGTAAAATGATTTTTTTAAAAATTATTTAAAACAAATTATTTTTAACATTCATGTTTTGATTCTTTTTAATATAGCTTTTACAGAGAGGGCTTGTCTCATCATTTTTGGGTTATGTCGTAAGATTATAATTCTGGATGACGATCATAGAGAAGTTAGGATCTATATTAAAAGTATATAGTCCATTAGGAATTAAAGAGCAGAGGAGTTGTTGGAGCTGTAATAGTTTTTTA ************************************************.............((((....))))........(((((((((((....((..((((.......))))..)).........((((((((.(((.......))).....)))).)))).............)))))))))))..........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	M023 head	M053 female body	SRR553488 RT_0-2 hours eggs	M024 male body	SRR618934 dsim w501 ovaries	GSM343915 embryo	SRR902009 testis
...........................................................................................................................TTGGGGTTAAGTCGTAAGATT..........................................................................................................	21	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................AAGATTATAATTCTGCATGACGAT........................................................................................	24	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....CGGTCTTCATTTACGGTAAAATGAT............................................................................................................................................................................................................................	25	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................AGAAGTTAGGATCTATATT................................................................	19	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................CGAGAAGTTAGGATCTATAGTAAATGT..........................................................	27	3	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................AGTTGTTGGAGCTGTAATAGTTTTTT.	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.......................AAATGATTTTTTTAA....................................................................................................................................................................................................................	15	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................GAGAAGTTAGGAACTATAAGAA..............................................................	22	3	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................CGATCTTAGCGAAGTTAGGC........................................................................	20	3	3	0.33	1	0	0	0	0	0	0	1	0	0	0
...............................................AAAACAAATTATCTTTTACAT......................................................................................................................................................................................	21	2	5	0.20	1	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................TTAGCAATTAAAGAG.................................	15	1	20	0.20	4	1	0	1	0	0	1	0	1	0	0
...................................................................................................................................................................................................................................GCTGGAGATGTAATAGT......	17	2	5	0.20	1	0	0	0	0	0	0	0	1	0	0
......................................................................................................................................................................GAGTAGTTTGGATCGATATT................................................................	20	3	6	0.17	1	0	0	0	0	0	0	0	0	1	0
...................................................................................................ACCGAGAGGGCTTGTCC......................................................................................................................................	17	2	7	0.14	1	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................TAGCAATTAAAGAGTAGA.............................	18	2	8	0.13	1	1	0	0	0	0	0	0	0	0	0
...................................................................................................ACCGAGAGGGCCTGTC.......................................................................................................................................	16	2	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................ACAGTGATGGCTTGTC.......................................................................................................................................	16	2	20	0.10	2	0	0	2	0	0	0	0	0	0	0
.........................................................................................................................GTTTTGGGTTATGACGTA...............................................................................................................	18	2	14	0.07	1	0	0	0	0	0	0	0	0	0	1
................................................................................................................................................................................................................................GAAGTTGGAGCTGTAATCGT......	20	3	15	0.07	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................AGAGAAGCTAGGCTCCATA..................................................................	19	3	17	0.06	1	0	0	0	1	0	0	0	0	0	0

Generated: 04/23/2015 at 07:07 AM