ID:

dsi_24845

 Coordinate:

2r:14058631-14058780 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.1 -12.8 -12.8

Flybase annnotation

CDS [2r_14058781_14058852_-]; exon [2r_14058781_14058852_-]; intron [2r_14057199_14058780_-]

No Repeatable elements found

mature
star
  1. 2r:4076230-4076245 -
  2. 2r:6917150-6917165 -
  3. dsi_24845  2r:14058734-14058749 -
  4. 3r:11367811-11367826 -
  5. 3r:14958470-14958485 -
  6. x:11396147-11396162 +

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TACAAGTTCAACTCCGATTGGACGACGGGGATCGTACAAAACTTCCAGAGGTTGGTGATGGATAACACGCCCACTTAGTTCTCTTTTTATTTTTGTTTCCCTCTGTTTAATTTCACAAATTCGCATTCGAACACGCTAAGAAATGAAACGAAAGTTGAAACGCTCCAGCGCTTATAGTTTCTTATGGTTTGTCTTTAACTAACTAACAAGTTTTGATTTTGGTTCAAGTACTGATTTATGGCTAACAGCA
*********************************************************************************..............................................(((((.((.((((((((.........((((........)))).......))))))))))))))).....****************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 M023
head
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
.....GTTCAAATCCGATTGGAAG.................................................................................................................................................................................................................................. 19 2 3 5.67 17 14 0 3 0 0 0 0 0
.............................................................................................................................................................................ATAGTTTCTTATGGTTTGTCTTT...................................................... 23 0 1 2.00 2 0 0 0 2 0 0 0 0
..................................................GTAGGCGATGGATAACAGG..................................................................................................................................................................................... 19 3 18 1.94 35 22 2 10 0 1 0 0 0
.....GTTCAAATCCGATTGGA.................................................................................................................................................................................................................................... 17 1 2 1.50 3 0 0 0 0 3 0 0 0
.....GTTCAAATCCGATTGGAAGC................................................................................................................................................................................................................................. 20 3 12 1.25 15 6 3 6 0 0 0 0 0
............TCCGATTGGACGACGGGG............................................................................................................................................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................................TATGGTTTGTCTTTAACTAACT.............................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................GATTTTGGTTCAAGTACTGATT.............. 22 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................................ACGAAAGTTAAATCGCTCCAT.................................................................................. 21 3 2 0.50 1 0 0 0 0 0 1 0 0
.....GTTCAAATCCGATTGGAA................................................................................................................................................................................................................................... 18 2 11 0.36 4 2 0 1 0 0 0 1 0
.................................................................................................................................................................GTTCCACCGCTTAGAGTTTCT.................................................................... 21 3 3 0.33 1 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................ATTTGATCTCGGTTCAAGTAC................... 21 3 4 0.25 1 0 0 0 1 0 0 0 0
.................................................................................TCTTTTTATTTTTGTT......................................................................................................................................................... 16 0 6 0.17 1 0 0 0 0 0 1 0 0
..................................................GTAGGCGATGGATAACAGGC.................................................................................................................................................................................... 20 3 6 0.17 1 0 0 1 0 0 0 0 0
....................................................................................................................................................................................CTTAAGGTTTGTCTT....................................................... 15 1 11 0.09 1 0 0 0 0 0 0 1 0
..............................................................................................................................TCGGACACGCTAAAAAA........................................................................................................... 17 2 14 0.07 1 0 0 0 0 0 0 0 1
...................................................TTGGTGATGGATAAACC...................................................................................................................................................................................... 17 2 17 0.06 1 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................................CTGATTTATCGGTAACGGC. 19 3 17 0.06 1 0 1 0 0 0 0 0 0

Anti-sense strand reads

ATGTTCAAGTTGAGGCTAACCTGCTGCCCCTAGCATGTTTTGAAGGTCTCCAACCACTACCTATTGTGCGGGTGAATCAAGAGAAAAATAAAAACAAAGGGAGACAAATTAAAGTGTTTAAGCGTAAGCTTGTGCGATTCTTTACTTTGCTTTCAACTTTGCGAGGTCGCGAATATCAAAGAATACCAAACAGAAATTGATTGATTGTTCAAAACTAAAACCAAGTTCATGACTAAATACCGATTGTCGT
******************************************************..............................................(((((.((.((((((((.........((((........)))).......))))))))))))))).....********************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
.................................................................................................................................................................CGAGGTGGCGAATCTCAA....................................................................... 18 2 4 20.75 83 83 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................GAGGTGGCGAATCTCAAA...................................................................... 18 2 1 14.00 14 14 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................GAGGTGGCGAATCTCAA....................................................................... 17 2 8 12.25 98 98 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TGCTAGGTGGCGAATCTCAA....................................................................... 20 3 3 11.67 35 34 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................TTGCTAGGTGGCGAATCTCAA....................................................................... 21 3 2 11.00 22 14 8 0 0 0 0 0 0 0 0
.................................................................................................................................................................CGAGGTGGCGAATCTCAAA...................................................................... 19 2 1 8.00 8 8 0 0 0 0 0 0 0 0 0
................................................................................................................................................................GCGAGGTGGCGAATCTCAA....................................................................... 19 2 1 8.00 8 8 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................CTAGGTGGCGAATATCAA....................................................................... 18 2 4 2.75 11 10 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................TTGAGAGGTGGCGAATCTCAA....................................................................... 21 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TCCGAGGTGGCGAATCTCAA....................................................................... 20 3 5 1.60 8 8 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TGAGAGGTGGCGAATCTCAA....................................................................... 20 3 2 1.50 3 3 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GGTCGCGAATCTCAA....................................................................... 15 1 9 1.00 9 8 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................TGCTAGGTGGCGAATCTCAAA...................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................GCTAGGTGGCGAATATCAA....................................................................... 19 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................TTGGGAGGTGGCGAATCTCAA....................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................GCGAGGTGGCGAATCTCAAA...................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TTCGAGGTGGCGAATCTCAAA...................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................GCAAGGTGGCGAATCTCAA....................................................................... 19 3 11 0.73 8 8 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................AGGTCGCGAATCTCAA....................................................................... 16 1 3 0.67 2 2 0 0 0 0 0 0 0 0 0
................................................................................................................................................................ACTAGGTGGCGAATATCAA....................................................................... 19 3 13 0.62 8 7 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................GGAGGTGGCGAATCTCAA....................................................................... 18 3 20 0.60 12 12 0 0 0 0 0 0 0 0 0
................................................................................................................................................................GCCAGGTGGCGAATCTCAA....................................................................... 19 3 13 0.54 7 7 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TCGAGGTGGCGAATCTCAAA...................................................................... 20 3 4 0.50 2 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TGGCGAGGTGGCGAATCTCAA....................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................GGGGTGGCGAATCTCAAA...................................................................... 18 3 20 0.50 10 9 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................CTAGGTGGCGAATATCAAA...................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TTTGCTAGGTGGCGAATCTCAA....................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TTCGAGGTGGCGAATCTCAA....................................................................... 20 3 5 0.40 2 2 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TAGGTGGCGAATATCAA....................................................................... 17 2 10 0.40 4 4 0 0 0 0 0 0 0 0 0
................................................................................................................................................................CCGAGGTGGCGAATCTCAAA...................................................................... 20 3 5 0.40 2 2 0 0 0 0 0 0 0 0 0
................................................................................................................................................................GCTAGGTGGCGAATCTCAAA...................................................................... 20 3 8 0.38 3 3 0 0 0 0 0 0 0 0 0
....................CTGCTTCCCCTAGCTTG..................................................................................................................................................................................................................... 17 2 8 0.38 3 0 0 0 0 0 2 0 1 0 0
....................................................................................................................................................GCTTTCAATTTAGCGAGG.................................................................................... 18 2 6 0.33 2 2 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................CGAGGTGGCGAATCTCAAAA..................................................................... 20 3 6 0.33 2 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TGAGAGGTCACGAATATCAA....................................................................... 20 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................CTTTGGGAGGTTGCGAAT............................................................................ 18 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................GCGGGGTGGCGAATCTCAA....................................................................... 19 3 6 0.33 2 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TGCGTGGTGGCGAATCTCAA....................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GGTGGCGAATATCAAA...................................................................... 16 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................CCAGGTGGCGAATCTCAAA...................................................................... 19 3 16 0.25 4 3 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................TAGGTGGCGAATATCAAA...................................................................... 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................GCCAGGTGGCGAATCTCAAA...................................................................... 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GGTGGCGAATCTCAAAGAAG.................................................................. 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GGTCGCGAATCTCAAA...................................................................... 16 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................ACGAGGTGGCGAATCTCAAA...................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0
...................CCTGCTGCCCCGAGCTTG..................................................................................................................................................................................................................... 18 2 6 0.17 1 0 0 0 1 0 0 0 0 0 0
...................CCTGCTTCCCCTAGCTTG..................................................................................................................................................................................................................... 18 2 6 0.17 1 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................GGGAGGTGGCGAATCTCAA....................................................................... 19 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................GCGAGGGTGCGAATCTCAA....................................................................... 19 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0
....................................................................TGGGTGAATCACGAGAA..................................................................................................................................................................... 17 2 16 0.13 2 2 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................GAGGTGGCGAATCTCAAAA..................................................................... 19 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................CAGGTGGCGAATCTCAAA...................................................................... 18 3 20 0.10 2 1 0 0 0 0 0 1 0 0 0
...................................................................GCGGGTGAATCACGA........................................................................................................................................................................ 15 1 11 0.09 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................TGGCGAATCTCAAAGAGTA................................................................. 19 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CGAATCTCAAAGGATAC................................................................ 17 2 12 0.08 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................GCGAGTTGGCGAATCTCAA....................................................................... 19 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0
...................CTTGCTGCCCCTAGCTTGG.................................................................................................................................................................................................................... 19 3 13 0.08 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................TGAGGTGGCGAATCTCAAA...................................................................... 19 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................GGAGGTGGCGAATCTCAAA...................................................................... 19 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................TGGCGAATCTCAAAGGATA................................................................. 19 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0
..................................................................GGTGGGTGAATCACGAGAAA.................................................................................................................................................................... 20 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................CGATGTGGCGAATCTCAAA...................................................................... 19 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................CTAGGTGGCGAATTTCAAA...................................................................... 19 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ACTAGAGCCAAGTTCAT.................... 17 2 18 0.06 1 0 0 0 0 0 0 0 0 1 0
.....................................................................GGGTGAATCACGAGAGATA.................................................................................................................................................................. 19 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TGCTTTCAATTTAGCGA...................................................................................... 17 2 19 0.05 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................TTAAGAGTAGGCTTGTGG................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................TGGCGAATCTCAAAGA.................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...........................................................................AACAAGAGAGGAATAAAAACAA......................................................................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.....................................................................CGGTGAATCTAGAGTAAAA.................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0
GTGTTCAAGTTGAGTCT......................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................GGGCGCGAATCTCAAA...................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:14058581-14058830 - dsi_24845 TACAAGTTCAACTCCGATTGGACGACGGGGATCGTACAAAACTTCCAGAGGTTGGTGATGGATAA-----CACGCCCACT----------TAGTTCTCTTTT---------TAT-----------------TTT--TG-TTTCCCT-CTG-TT-TAATTTCACA-AATTCGCATTCGA-ACAC---GCT-----------------------------------------------AAGA--AATG---------AAACGAAAGTT-G--AA--------ACGCT---CCAGCGCTTATA-----G--------------TTTCT---------------------------------------TATGG---------------TTTG-TC--TTTAACTAACTA---ACAAG-TTTT---------------------------------------------GA------------------TTTTGGTTC-AAG----TACTGATTTATGGCT--AA--------------------------CAG-------CA
droSec2 scaffold_1:10910639-10910887 - TACAAGTTCAACTCCGATTGGACGACGGGGATCGTACAAAACTTCCAGAGGTTGGTGATGGATAA-----CACGCCTACT----------TAGTTCTCTTTT---------T-T-----------------TTT--TG-TTTCCCT-CTG-TT-TAATTTCACA-AATTCGCATTCGA-ACAC---GCT-----------------------------------------------AAGA--AATG---------AAACGAAAGTT-G--AA--------ACGCT---CCAGCGCTTATA-----G--------------TTTCT---------------------------------------TATGG---------------TTTG-TC--TTTAACTAACTA---ACAAG-TTTT---------------------------------------------GA------------------TTTTGGTTC-AAG----TACTGATTTATGGCT--AA--------------------------CAG-------CA
dm3 chr2R:13410797-13411054 - TACAAGTTCAACTCCGATTGGACGACGGGGATCGTACAAAACTTCCAGAGGTTGGTGATGGATAA-----CACGCCCACT----------TAGTTCTCTTTT------------TTGTTT-TCT-----TTTTT--TG-TTTCCCT-CTG-TT-TAATTTCACA-AATTCGCATTCGA-ACAC---GCT-----------------------------------------------AAGA--AATG---------AAACGAAAGTT-G--AA--------ACGCT---CCAGCGCTTATA-----G--------------TTTTT---------------------------------------TATGG---------------TTTG-TC--TTTAACTTACTA---ACAAG-TTTT---------------------------------------------GA------------------TTTCGGTTC-AAG----TACTGAATTATGGCT--AA--------------------------CAG-------CA
droEre2 scaffold_4845:7637998-7638237 - TACAAGTTCAACTCCGATTGGACGACGGGGATCGTACAAAACTTCCAGAGGTTGGTGATGGATAA-----CACGCCCACT----------TAGTTTTCTTT--------------------------------T--TG-TTTCCCT-CTG-TT-TAATTTCACA-AATTCGCATTCGA-ACAC---GCT-----------------------------------------------AAGA--AATG---------AAACGAACGTT-G--AA--------ACGCT---CCAGCGCTTACA-----G--------------TTTTT---------------------------------------TATGG---------------TTTG-TC--TTT----AACTA---ACAAG-TTTT---------------------------------------------GA------------------TTTTGGTTC-AAG----TACTGAATTATGGCT--AA--------------------------CAG-------CA
droYak3 2R:15776233-15776479 + TACAAGTTCAACTCCGATTGGACGACGGGGATCGTACAAAACTTCCAGAGGTTGGTGATGGATAA-----CACGCCCACT----------TAGTTCTCTTTT-------------------------------T--TG-TTTCCCT-CTG-TT-TAATTTCACA-AATTCGCATTCGA-ACAC---GCT-----------------------------------------------AAGA--AATTTT---AAGAAAACGAACGTT-G--AA--------ACGCT---CCAGCGCTTACA-----G--------------TTTTT---------------------------------------TATGG---------------TTTG-TC--TTT----AACTA---ACACG-TTTT---------------------------------------------GA------------------TTTTGGTTC-AAG----TACTGATTTATGGCT--AA--------------------------CAG-------CA
droEug1 scf7180000409672:1700703-1700946 + TACAAGTTCAACTCCGATTGGACGACGGGGATCGTACAAAACTTCCAGAGGTTGGTGATGGATAA-----CACGCCCACT----------TAGTTCCCATTT-------------------------------T--TATTTTCCCT--TG-TTTTATTTTCACAAAATTCGCATTCGA-ACAC---GCT-----------------------------------------------AAGA--AATG---------AAACGAGAGTT-----A--------ACGCT---CGAGCGCTTCAA-----TTT------------TTTTT---------------------------------------TATAG---------------TTTT-TC--AAT----AACTA---ACATG-TTTT---------------------------------------------AA------------------TTTTTGTTG-AAC--C-TACTGATTTATGGCT--AA--------------------------CAG-------CT
droBia1 scf7180000301754:5658895-5659133 - TACAAGTTCAACTCCGATTGGACGACGGGGATCGTACAAAACTTCCAGAGGTTGGTGATGGATAA-----CACGCCCACT----------AAGTTCTCTTT--------------------------------T--TGTTTTTCC--TTG-TTTTACTTCCACAAAATTCGCATTCGA-ACAC---GCT-----------------------------------------------AAGA--AATG---------AAACGAAAGT------A--------ACGCT---CAAGCGCTTCAA-----G--------------TTTTT---------------------------------------TATGG---------------TTTT-TA--TTC----AACTA---ACAAG-TTTT---------------------------------------------TA------------------TTTTGGTCG-AAC----TACTGATATATGGCT--AA--------------------------CAG-------CT
droTak1 scf7180000415138:330615-330853 + TACAAGTTCAACTCCGATTGGACGACGGGGATCGTACAAAACTTCCAGAGGTTGGTGATGGATGATAACACACGCCCACT----------TAGTTCTTTCTT------------TTTTT------------CCC--CG-TTTTCCT-TTGTTTTTATTTCCACAAAATTCGCATTCGA-ACAC---GCT-----------------------------------------------AAGA--AATG---------AAACGAACGTT-----A--------ACGCT---CGAGTGCTTCCA-----T--------------TTTTT--------------------------------------GTACGG---------------TTTT-TC--TTT----AACTA---ACTAG-TTTT------------------------------------------------------------------------------------TTGATTTGTGGCT--AA--------------------------CAA-------AT
droEle1 scf7180000491214:877367-877620 + TACAAGTTCAACTCCGATTGGACGACGGGGATCGTACAAAACTTCCAGAGGTTGGTGATGGATAA-----CACGCCCACT----------TAGTTCTCGTTT----------AT----T------------TTG--TG-TTTCCCTTTTG-TTTTATTTACACAAAATTCGCATTCGA-ACAC---GCT-----------------------------------------------AAGA--AATG---------AAACGAAAGTT-T---A--------ACGCT---CCAGCGCTTCCA-----T--------------T-TTT---------------------------------------TGTGGTTT-------------CTG-AT--TTT----AACTA---ACAAGATTTT---------------------------------------------GA------------------TTTTGGTTT-AACTACTTACTGATTTATAGCT--AA--------------------------TAG-------CC
droRho1 scf7180000778035:135461-135714 + TACAAGTTCAACTCCGATTGGACGACGGGGATCGTACAAAACTTCCAGAGGTTGGTGATGGATAA-----CACGACCACT------TATGTAGTTCTCGTTT-------------------------------T--TGTTTTCCCTTTTG-TTTTATTTCCACAAAATTCGCATTCGA-ACAC---GCT-----------------------------------------------AAGA--AATG---------AAACGAAAGTT-T---A--------ACGCT---CAAGCGCTTCCA-----T--------------TTTTT-----------------------------------TTTTTGT-G---------------TTTT-TCCTTTT----GACTA---ACAAGATTTT---------------------------------------------GA------------------TTTTAATTC-AAC----TACTGATTAATAGCT--AA--------------------------TAG-------CT
droFic1 scf7180000453948:2043306-2043543 + TACAAGTTCAACTCCGATTGGACGACGGGGATCGTACAAAACTTCCAGAGGTTGGTGATGGATAA-----CTCGCCCACT----------TAGTTCTCGATT-------------------------------T--TGATTTCCCT-TGG-TTTTATTTTCACAAAATTCGCATTCGA-ACAC---GCT-----------------------------------------------AA-----------------AAACGAAAGTT-----A--------ACGCT---CGACCGCTTCCA-----C--------------TTT-T---------------------------------------TATGGTTT-------------TTG-TG--TTA----AACTA---ACAAGATTTT---------------------------------------------AA------------------TTTCGGCCC-AAC----CACTAATTTATGGCT--AA--------------------------TAG-------CT
droKik1 scf7180000302385:830833-830993 + T-------CGACTC-----------------------------------------------------------------------------------------------------------------------------------TTTTC-TTTTAATTCCACAAAATTCGCATTCAAAACAC---GCT-----------------------------------------------T---------------------------TT--------------------------------GA-----TTT-CCT--------CTTTT---------------------------------------TATATTTCTTGATTTTATAGTTTGGTC--TTG----GACTAACAAC--GATTTT---------------------------------------------TA------------------TT---------------AACTGATTTATTGCT--AAGAAAAGTCACGCTAAATGAAAATAGCCAG-------CA
droAna3 scaffold_13266:8895739-8896012 - TACAAGTTCAACTCCGATTGGACGACGGGGATCGTACAAAACTTCCAGAGGTTGGTGTTGGGTAA-----AAAGTCTAAG----------AAGTTTA-----TGGATTCTT---GTTCTTTAGTT-----CCTT--TG-TTTTCT---TGTTTTT-ATTACAA-AAATTTGCATTCAA-ACAC---GTT-----------------------------------------------AAGA--AATGA--------AAACTAAATTT-C---A--------AAGCTG--GCCGCGCTTTTA-----T--------------TTGTT---------------------------------------TT------------------TTTT-TT--TTT----GACTA---ACAAGATTCT---------------------------------------------TATT----------------TTTTGGTTTGAACTAC-TACTGATTTATCGCT--AAGGAA-GTCACGC--------------TAG-------CT
droBip1 scf7180000396427:42795-43071 - TACAAGTTCAACTCCGATTGGACGACGGGGATCGTACAAAACTTCCAGAGGTTGGTGTTGGGTAA-----AAAGTCTAAG----------AAGTTATAGTTT---------T-T----T-------------TT--AG-TTTC--T-TTG-TTTTATTTTCACAAAATTTGCATTCAG-ACAC---GTT-----------------------------------------------AAGA--AC---------------------------A--------AAGCTCG--CCGCGCTTTTA-----TTTTTATTATTTTTTTTTTT---------------------------------------ACAAG--------TTTA---TTTG-GCC-TT-TAGTGACTA---ACAAGATTCT---------------------------------A-----ATTAT-TTTT----------------TTTTGGTTTGAACTAC-TACTGATATATCGCT--AAGGAA-GTCACGC--------------TAG-------CT
dp5 3:4861884-4862154 - TACAAGTTCAACTCCGATTGGGCGACGGGGATCCTATAAAACTTCCAGAGGTTGGTGATGGGTAT-AACACACACCTAAT------TACGTAGTTCTCTCGT------------TCGTTTAATTCTTATTCT-------------------TTTGATTTCCTCAAAAATCGTATTCAA-ACAC---GCA-----------------------------------------------AAAAACAATAA--------CAACGACAAAT-G---A--------ATGCCCGTCGCGTGCTTACA-----T--------------TTA---------------------------------------------G-------------------------------------------------------------------------------TTTAATTCGATTAT-AATT----------------TATTGGTTC---T----TACTGACTTATCGCT--AAGGATTCACACACCACCT--------CCAGCTTATGAGT
droPer2 scaffold_2:5054367-5054637 - TACAAGTTCAACTCCGATTGGGCGACGGGGATCCTATAAAACTTCCAGAGGTTGGTGATGGGTAT-AACACACACCTAAT------TACGTAGTTCTCTCTT------------TCGTTTAATTGTTATTCT-------------------TTTGATTTCCTCAAAAATCGTATTCAA-ACAC---GCA-----------------------------------------------AAAAACAATAA--------CAACGACAAAT-G---A--------ATGCCCGTCGCGTGCTTACA-----T--------------TTA---------------------------------------------G-------------------------------------------------------------------------------TTTAATTCGATTAT-AATT----------------TATTGGTTC-T------AACTGACTTATCGCT--AAGGATTCACACACCACCT--------CCAGCTTATGAGT
droWil2 scf2_1100000004954:4451790-4452037 + TACAAGTTCAACTCCGATTGGACGAAGGGGATCGTATAAAACTTCCAGAGGTTGGTGCTGGGTAA-----CACGCCTACT----------AATTGTT-----TCTACTCAT---TCTTTTTACTTTTTCTATTTTCC-----------------------------GTTCTCTTTTGA-GTTCTGGTCT-----------------------------------------------AAGA--ATTG---------CTA-GAAAGAA-T---A--------------------CAATTTAAGTTTATTATTACGATTTTTGTTTGT---------------------------------------TCTGG---------------TCTG-GACTTGT----GATTA---ACACAAAT---------------------------AGATATACA-----ATTATTTT------------------TTTTGATTT-AAG------------------------------------------------------------T
droVir3 scaffold_12875:12742785-12743067 + dvi_6538 CACAAGTTCAACTCCGATTGGACGACGGGGATCATACAAAACTTCCAGAGGTTGGTGCTGGGTAA-----CAAGT--ACTAAG------AT-ATTTTCATTT---------------------------------------TTCTT-TTG-TT------------------------------------TTTCTACTCTTGCTTTTGTTGGTTAGTTATTGT--TAACAACAGCGAAATATCCATAAGAAAAAAAAAACAAAACTA-C--AT------ATATGCT-------GGCTTGGA-----C--------------T--TG---------------------------------------TGTGC---------------CTAG-TC--CCTA---------------GACGC-TGATTAACAACTGATTTTTTTTAAAAAACATTCTTT---------TA--CTTTATCTATTATC------------------------AGTTAAGGC---GC--------------------------TAG-------CT
droMoj3 scaffold_6496:20023725-20024001 + CACAAGTTCAACTCCGATTGGACGACGGGGATCTTACAAAACTTCCAGAGGTTGGTGCTGGGTAA-----CAAGT--AATAAG------ATCATTTTTTTTT----TCCTTTGT---TT------------TTT--C--TTTCCCTTCTG-TT------------------------------------TTTCTACTCTTGCTTTTGTTGGTTAGTTCGTGTGTTAACA---GCG-AAAACCAATA---------ACATAAAAGGG-----A--------ACGCT---GGCTCCC--------------------------------------------------------------------------------------------------CCTA---------------CACGC-TGATTAACAC---ATTT-----------CATTTTAT---------TC--CCTTAACTATAGTTAATTAAGGCTA-GAA--T-AGCAGAGCTACTACC--AA--------------------------GAA-------CA
droGri2 scaffold_15245:7610504-7610804 - CACAAGTTCAACTCCGATTGGACGACGGGGATCTTACAAAACTTCCAGAGGTTGGTGCTGGGTAA-----CAAGT--ACTAAGCATTCTTTAGTTTTTTTTT------------TC-----------------------TTTTCTT-TGG-TT------------------------------------TTTCTACTCTTGCTTTTATCGGTTAGTTTGTGT-TTAACAACAACCCAAAA--AAAA---------AAA-AAAAGCCACAAAAAAACTTG-ATTTTT------GGCTTGGA-----T--------------TTCTTTGTGGCTCAATTAATACACAACTTTTAATTATTATTTTTTGTTGT--------------TTTT-TT--TTT----AAATA---A-------------------------------------------------------------------TTATCAATTAACGC-------------GTGCTTAGCGCTAGAA--------------------------AAT-------CA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TACAAGTTCAACTCCGATTGGACGACGGGGATCGTACAAAACTTCCAGAGGTTGGTGATGGATAA-----CACGCCCACT----------TAGTTCTCTTTT---------TAT-----------------TTT--TG-TTTCCCT-CTG-TT-TAATTTCACA-AATTCGCATTCGA-ACAC---GCT-----------------------------------------------AAGA--AATG---------AAACGAAAGTT-G--AA--------ACGCT---CCAGCGCTTATA-----G--------------TTTCT---------------------------------------TATGG---------------TTTG-TC--TTTAACTAACTA---ACAAG-TTTT---------------------------------------------GA------------------TTTTGGTTC-AAG----TACTGATTTATGGCT--AA--------------------------CAG-------CASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................ATA-----G--------------TTTCT---------------------------------------TATGG---------------TTTG-TC--TTT.................................................................................................................................................................2312.00200000000000002000
............TCCGATTGGACGACGGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
............................................................................................................................................................................................................................................................................................................................................................................TATGG---------------TTTG-TC--TTTAACTAACT.........................................................................................................................................................2211.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA------------------TTTTGGTTC-AAG----TACTGATT.................................................2211.00101000000000000000
................................................................................................TCTTTT---------TAT-----------------TTT--TG-TT................................................................................................................................................................................................................................................................................................................................................................................................................................1660.17100000000001000000
droSec2
TACAAGTTCAACTCCGATTGGACGACGGGGATCGTACAAAACTTCCAGAGGTTGGTGATGGATAA-----CACGCCTACT----------TAGTTCTCTTTT---------T-T-----------------TTT--TG-TTTCCCT-CTG-TT-TAATTTCACA-AATTCGCATTCGA-ACAC---GCT-----------------------------------------------AAGA--AATG---------AAACGAAAGTT-G--AA--------ACGCT---CCAGCGCTTATA-----G--------------TTTCT---------------------------------------TATGG---------------TTTG-TC--TTTAACTAACTA---ACAAG-TTTT---------------------------------------------GA------------------TTTTGGTTC-AAG----TACTGATTTATGGCT--AA--------------------------CAG-------CASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....GTTCAACTCCGATTGGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000
.........................................................................................................................................................................................................................................................................................................ATA-----G--------------TTTCT---------------------------------------TATGG---------------TTTG-TC--T...................................................................................................................................................................2111.0011000
...................................................................................................................................................................................................................................................ATG---------AAACGAAAGTT-G--AA--------ACGCT---CCA..........................................................................................................................................................................................................................................................................2511.0010010
dm3
TACAAGTTCAACTCCGATTGGACGACGGGGATCGTACAAAACTTCCAGAGGTTGGTGATGGATAA-----CACGCCCACT----------TAGTTCTCTTTT------------TTGTTT-TCT-----TTTTT--TG-TTTCCCT-CTG-TT-TAATTTCACA-AATTCGCATTCGA-ACAC---GCT-----------------------------------------------AAGA--AATG---------AAACGAAAGTT-G--AA--------ACGCT---CCAGCGCTTATA-----G--------------TTTTT---------------------------------------TATGG---------------TTTG-TC--TTTAACTTACTA---ACAAG-TTTT---------------------------------------------GA------------------TTTCGGTTC-AAG----TACTGAATTATGGCT--AA--------------------------CAG-------CASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................TCCAGAGGTTGGTGATGGATAA-----CACGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
...........................................TCCAGAGGTTGGTGATGGATAA-----CACGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000100100000
............................................................................................................................................................................................................................................................................................................................................................................................................AACTTACTA---ACAAG-TTTT---------------------------------------------GA------------------TTTCGGT...................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TA---ACAAG-TTTT---------------------------------------------GA------------------TTTCGGTTC-AAG----.........................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000
.....GTTCAACTCCGATTGGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GTTCAACTCCGATTGGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AACTCCGATTGGACGACGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CA-AATTCGCATTCGA-ACAC---GCT-----------------------------------------------AAG..............................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............TCCGATTGGACGACGGGGATCGTACAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TCCAGAGGTTGGTGATGGATAA-----CACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TCGTACAAAACTTCCAGAGGTTGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TCCGATTGGACGACGGGGATCGTACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................TAA-----CACGCCCACT----------TAGTTCTCTTTT------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TTCGCATTCGA-ACAC---GCT-----------------------------------------------AAGA--AATG---------A.............................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................T-CTG-TT-TAATTTCACA-AATTCGCATTCGA-..........................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................TT--TG-TTTCCCT-CTG-TT-TAATTTCACA-AAT.....................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................TTT-TCT-----TTTTT--TG-TTTCCCT-CTG-TT-...................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................ATCGTACAAAACTTCCAGAGGTTGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TCGCATTCGA-ACAC---GCT-----------------------------------------------AAGA--AATG---------A.............................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GTACAAAACTTCCAGAGGTTGGTGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TT---------------------------------------------GA------------------TTTCGGTTC-AAG----TACTGAAT.................................................2411.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................TTCCAGAGGTTGGTGATGGATAA-----CACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................TG-TC--TTTAACTTACTA---ACAAG-TTTT---------------------------------------------GA------------------T.........................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................ATTGGACGACGGGGATCGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................TTTAACTTACTA---ACAAG-TTTT---------------------------------------------GA------------------TTTCGG....................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................CAAAACTTCCAGAGGTTGGTGATGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TCCAGAGGTTGGTGATGGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................................................................................TTCGCATTCGA-ACAC---GCT-----------------------------------------------AAGA--AATG---------AAA...........................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................CGCT---CCAGCGCTTATA-----G--------------TTTT.........................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TCCGATTGGACGACGGGGATCGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TTT---------------------------------------------GA------------------TTTCGGTTC-AAG----TACTGAAT.................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................C---GCT-----------------------------------------------AAGA--AATG---------AAACGAAA......................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGTTC-AAG----TACTGAA..................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................CAGAGGTTGGTGATGGATAA-----CACGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA------------------TTTCGGTTC-AAG----TACTGAATTATGGC...........................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TGGACGACGGGGATCGTACAAAACTTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TCCGATTGGACGACGGGGATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................ATTCGCATTCGA-ACAC---GCT-----------------------------------------------AAGA--AA.........................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....AGTTCAACTCCGATTGGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................AATTCGCATTCGA-ACAC---GCT-----------------------------------------------AAGA--AA.........................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................ATAA-----CACGCCCACT----------TAGTTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................GCT---CCAGCGCTTATA-----G--------------TTTTT---------------------------------------.................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TCAACTCCGATTGGACGACGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................TATGG---------------TTTG-TC--TTTAACTTACTA---ACAAG-T..............................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................GATAA-----CACGCCCACT----------TAGTTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TACAAGTTCAACTCCGATTGGACGACGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................TGTTT-TCT-----TTTTT--TG-TTTCCCT-CTG-TT-...................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................CACT----------TAGTTCTCTTTT------------TTGTTT-TC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................CTTTT------------TTGTTT-TCT-----TTTTT--TG-T.................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................TTTT------------TTGTTT-TCT-----TTTTT--TG-T.................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................T------------TTGTTT-TCT-----TTTTT--TG-T.................................................................................................................................................................................................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TACAAGTTCAACTCCGATTGGACGACGGGGATCGTACAAAACTTCCAGAGGTTGGTGATGGATAA-----CACGCCCACT----------TAGTTTTCTTT--------------------------------T--TG-TTTCCCT-CTG-TT-TAATTTCACA-AATTCGCATTCGA-ACAC---GCT-----------------------------------------------AAGA--AATG---------AAACGAACGTT-G--AA--------ACGCT---CCAGCGCTTACA-----G--------------TTTTT---------------------------------------TATGG---------------TTTG-TC--TTT----AACTA---ACAAG-TTTT---------------------------------------------GA------------------TTTTGGTTC-AAG----TACTGAATTATGGCT--AA--------------------------CAG-------CASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................T-TAATTTCACA-AATTCGCATTCGA-..........................................................................................................................................................................................................................................................................................................................................................................................24110.001000000010
..................................TACAAAACTTCCAGAGGTTGGTGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
droYak3
TACAAGTTCAACTCCGATTGGACGACGGGGATCGTACAAAACTTCCAGAGGTTGGTGATGGATAA-----CACGCCCACT----------TAGTTCTCTTTT-------------------------------T--TG-TTTCCCT-CTG-TT-TAATTTCACA-AATTCGCATTCGA-ACAC---GCT-----------------------------------------------AAGA--AATTTT---AAGAAAACGAACGTT-G--AA--------ACGCT---CCAGCGCTTACA-----G--------------TTTTT---------------------------------------TATGG---------------TTTG-TC--TTT----AACTA---ACACG-TTTT---------------------------------------------GA------------------TTTTGGTTC-AAG----TACTGATTTATGGCT--AA--------------------------CAG-------CASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................CCCT-CTG-TT-TAATTTCACA-AATTCGCA................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
droEug1
TACAAGTTCAACTCCGATTGGACGACGGGGATCGTACAAAACTTCCAGAGGTTGGTGATGGATAA-----CACGCCCACT----------TAGTTCCCATTT-------------------------------T--TATTTTCCCT--TG-TTTTATTTTCACAAAATTCGCATTCGA-ACAC---GCT-----------------------------------------------AAGA--AATG---------AAACGAGAGTT-----A--------ACGCT---CGAGCGCTTCAA-----TTT------------TTTTT---------------------------------------TATAG---------------TTTT-TC--AAT----AACTA---ACATG-TTTT---------------------------------------------AA------------------TTTTTGTTG-AAC--C-TACTGATTTATGGCT--AA--------------------------CAG-------CTSizeHit CountTotal NormTotal
No Reads
droBia1
TACAAGTTCAACTCCGATTGGACGACGGGGATCGTACAAAACTTCCAGAGGTTGGTGATGGATAA-----CACGCCCACT----------AAGTTCTCTTT--------------------------------T--TGTTTTTCC--TTG-TTTTACTTCCACAAAATTCGCATTCGA-ACAC---GCT-----------------------------------------------AAGA--AATG---------AAACGAAAGT------A--------ACGCT---CAAGCGCTTCAA-----G--------------TTTTT---------------------------------------TATGG---------------TTTT-TA--TTC----AACTA---ACAAG-TTTT---------------------------------------------TA------------------TTTTGGTCG-AAC----TACTGATATATGGCT--AA--------------------------CAG-------CTSizeHit CountTotal NormTotal
No Reads
droTak1
TACAAGTTCAACTCCGATTGGACGACGGGGATCGTACAAAACTTCCAGAGGTTGGTGATGGATGATAACACACGCCCACT----------TAGTTCTTTCTT------------TTTTT------------CCC--CG-TTTTCCT-TTGTTTTTATTTCCACAAAATTCGCATTCGA-ACAC---GCT-----------------------------------------------AAGA--AATG---------AAACGAACGTT-----A--------ACGCT---CGAGTGCTTCCA-----T--------------TTTTT--------------------------------------GTACGG---------------TTTT-TC--TTT----AACTA---ACTAG-TTTT------------------------------------------------------------------------------------TTGATTTGTGGCT--AA--------------------------CAA-------ATSizeHit CountTotal NormTotal
No Reads
droEle1
TACAAGTTCAACTCCGATTGGACGACGGGGATCGTACAAAACTTCCAGAGGTTGGTGATGGATAA-----CACGCCCACT----------TAGTTCTCGTTT----------AT----T------------TTG--TG-TTTCCCTTTTG-TTTTATTTACACAAAATTCGCATTCGA-ACAC---GCT-----------------------------------------------AAGA--AATG---------AAACGAAAGTT-T---A--------ACGCT---CCAGCGCTTCCA-----T--------------T-TTT---------------------------------------TGTGGTTT-------------CTG-AT--TTT----AACTA---ACAAGATTTT---------------------------------------------GA------------------TTTTGGTTT-AACTACTTACTGATTTATAGCT--AA--------------------------TAG-------CCSizeHit CountTotal NormTotal
No Reads
droRho1
TACAAGTTCAACTCCGATTGGACGACGGGGATCGTACAAAACTTCCAGAGGTTGGTGATGGATAA-----CACGACCACT------TATGTAGTTCTCGTTT-------------------------------T--TGTTTTCCCTTTTG-TTTTATTTCCACAAAATTCGCATTCGA-ACAC---GCT-----------------------------------------------AAGA--AATG---------AAACGAAAGTT-T---A--------ACGCT---CAAGCGCTTCCA-----T--------------TTTTT-----------------------------------TTTTTGT-G---------------TTTT-TCCTTTT----GACTA---ACAAGATTTT---------------------------------------------GA------------------TTTTAATTC-AAC----TACTGATTAATAGCT--AA--------------------------TAG-------CTSizeHit CountTotal NormTotal
No Reads
droFic1
TACAAGTTCAACTCCGATTGGACGACGGGGATCGTACAAAACTTCCAGAGGTTGGTGATGGATAA-----CTCGCCCACT----------TAGTTCTCGATT-------------------------------T--TGATTTCCCT-TGG-TTTTATTTTCACAAAATTCGCATTCGA-ACAC---GCT-----------------------------------------------AA-----------------AAACGAAAGTT-----A--------ACGCT---CGACCGCTTCCA-----C--------------TTT-T---------------------------------------TATGGTTT-------------TTG-TG--TTA----AACTA---ACAAGATTTT---------------------------------------------AA------------------TTTCGGCCC-AAC----CACTAATTTATGGCT--AA--------------------------TAG-------CTSizeHit CountTotal NormTotal
No Reads
droKik1
T-------CGACTC-----------------------------------------------------------------------------------------------------------------------------------TTTTC-TTTTAATTCCACAAAATTCGCATTCAAAACAC---GCT-----------------------------------------------T---------------------------TT--------------------------------GA-----TTT-CCT--------CTTTT---------------------------------------TATATTTCTTGATTTTATAGTTTGGTC--TTG----GACTAACAAC--GATTTT---------------------------------------------TA------------------TT---------------AACTGATTTATTGCT--AAGAAAAGTCACGCTAAATGAAAATAGCCAG-------CASizeHit CountTotal NormTotal
No Reads
droAna3
TACAAGTTCAACTCCGATTGGACGACGGGGATCGTACAAAACTTCCAGAGGTTGGTGTTGGGTAA-----AAAGTCTAAG----------AAGTTTA-----TGGATTCTT---GTTCTTTAGTT-----CCTT--TG-TTTTCT---TGTTTTT-ATTACAA-AAATTTGCATTCAA-ACAC---GTT-----------------------------------------------AAGA--AATGA--------AAACTAAATTT-C---A--------AAGCTG--GCCGCGCTTTTA-----T--------------TTGTT---------------------------------------TT------------------TTTT-TT--TTT----GACTA---ACAAGATTCT---------------------------------------------TATT----------------TTTTGGTTTGAACTAC-TACTGATTTATCGCT--AAGGAA-GTCACGC--------------TAG-------CTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TACAAGTTCAACTCCGATTGGACGACGGGGATCGTACAAAACTTCCAGAGGTTGGTGTTGGGTAA-----AAAGTCTAAG----------AAGTTATAGTTT---------T-T----T-------------TT--AG-TTTC--T-TTG-TTTTATTTTCACAAAATTTGCATTCAG-ACAC---GTT-----------------------------------------------AAGA--AC---------------------------A--------AAGCTCG--CCGCGCTTTTA-----TTTTTATTATTTTTTTTTTT---------------------------------------ACAAG--------TTTA---TTTG-GCC-TT-TAGTGACTA---ACAAGATTCT---------------------------------A-----ATTAT-TTTT----------------TTTTGGTTTGAACTAC-TACTGATATATCGCT--AAGGAA-GTCACGC--------------TAG-------CTSizeHit CountTotal NormTotal
No Reads
dp5
TACAAGTTCAACTCCGATTGGGCGACGGGGATCCTATAAAACTTCCAGAGGTTGGTGATGGGTAT-AACACACACCTAAT------TACGTAGTTCTCTCGT------------TCGTTTAATTCTTATTCT-------------------TTTGATTTCCTCAAAAATCGTATTCAA-ACAC---GCA-----------------------------------------------AAAAACAATAA--------CAACGACAAAT-G---A--------ATGCCCGTCGCGTGCTTACA-----T--------------TTA---------------------------------------------G-------------------------------------------------------------------------------TTTAATTCGATTAT-AATT----------------TATTGGTTC---T----TACTGACTTATCGCT--AAGGATTCACACACCACCT--------CCAGCTTATGAGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................GCTTACA-----T--------------TTA---------------------------------------------G-------------------------------------------------------------------------------TTTAATTCGATT.................................................................................................2411.0010100000000
droPer2
TACAAGTTCAACTCCGATTGGGCGACGGGGATCCTATAAAACTTCCAGAGGTTGGTGATGGGTAT-AACACACACCTAAT------TACGTAGTTCTCTCTT------------TCGTTTAATTGTTATTCT-------------------TTTGATTTCCTCAAAAATCGTATTCAA-ACAC---GCA-----------------------------------------------AAAAACAATAA--------CAACGACAAAT-G---A--------ATGCCCGTCGCGTGCTTACA-----T--------------TTA---------------------------------------------G-------------------------------------------------------------------------------TTTAATTCGATTAT-AATT----------------TATTGGTTC-T------AACTGACTTATCGCT--AAGGATTCACACACCACCT--------CCAGCTTATGAGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TACAAGTTCAACTCCGATTGGACGAAGGGGATCGTATAAAACTTCCAGAGGTTGGTGCTGGGTAA-----CACGCCTACT----------AATTGTT-----TCTACTCAT---TCTTTTTACTTTTTCTATTTTCC-----------------------------GTTCTCTTTTGA-GTTCTGGTCT-----------------------------------------------AAGA--ATTG---------CTA-GAAAGAA-T---A--------------------CAATTTAAGTTTATTATTACGATTTTTGTTTGT---------------------------------------TCTGG---------------TCTG-GACTTGT----GATTA---ACACAAAT---------------------------AGATATACA-----ATTATTTT------------------TTTTGATTT-AAG------------------------------------------------------------TSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................................G---------CTA-GAAAGAA-T---A--------------------CAATTTAAG................................................................................................................................................................................................................................................................2211.00100001
.............................................CAGAGGTTGGTGCTGGGTAA-----CACGCCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100
droVir3
CACAAGTTCAACTCCGATTGGACGACGGGGATCATACAAAACTTCCAGAGGTTGGTGCTGGGTAA-----CAAGT--ACTAAG------AT-ATTTTCATTT---------------------------------------TTCTT-TTG-TT------------------------------------TTTCTACTCTTGCTTTTGTTGGTTAGTTATTGT--TAACAACAGCGAAATATCCATAAGAAAAAAAAAACAAAACTA-C--AT------ATATGCT-------GGCTTGGA-----C--------------T--TG---------------------------------------TGTGC---------------CTAG-TC--CCTA---------------GACGC-TGATTAACAACTGATTTTTTTTAAAAAACATTCTTT---------TA--CTTTATCTATTATC------------------------AGTTAAGGC---GC--------------------------TAG-------CTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................TACTCTTGCTTTTGTTGGTTG.......................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................TG---------------------------------------TGTGC---------------CTAG-TC--CCTA---------------GACGC-TGAT.......................................................................................................................................2611.001000000000000000000000000100000000000000000000000000000000000000
..........................................................TGGGTAA-----CAAGT--ACTAAG------AT-ATTTTCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................C--CCTA---------------GACGC-TGATTAACAACTG..............................................................................................................................2311.001000000000000000000000000010000000000000000000000000000000000000
droMoj3
CACAAGTTCAACTCCGATTGGACGACGGGGATCTTACAAAACTTCCAGAGGTTGGTGCTGGGTAA-----CAAGT--AATAAG------ATCATTTTTTTTT----TCCTTTGT---TT------------TTT--C--TTTCCCTTCTG-TT------------------------------------TTTCTACTCTTGCTTTTGTTGGTTAGTTCGTGTGTTAACA---GCG-AAAACCAATA---------ACATAAAAGGG-----A--------ACGCT---GGCTCCC--------------------------------------------------------------------------------------------------CCTA---------------CACGC-TGATTAACAC---ATTT-----------CATTTTAT---------TC--CCTTAACTATAGTTAATTAAGGCTA-GAA--T-AGCAGAGCTACTACC--AA--------------------------GAA-------CASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CACAAGTTCAACTCCGATTGGACGACGGGGATCTTACAAAACTTCCAGAGGTTGGTGCTGGGTAA-----CAAGT--ACTAAGCATTCTTTAGTTTTTTTTT------------TC-----------------------TTTTCTT-TGG-TT------------------------------------TTTCTACTCTTGCTTTTATCGGTTAGTTTGTGT-TTAACAACAACCCAAAA--AAAA---------AAA-AAAAGCCACAAAAAAACTTG-ATTTTT------GGCTTGGA-----T--------------TTCTTTGTGGCTCAATTAATACACAACTTTTAATTATTATTTTTTGTTGT--------------TTTT-TT--TTT----AAATA---A-------------------------------------------------------------------TTATCAATTAACGC-------------GTGCTTAGCGCTAGAA--------------------------AAT-------CASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 01:38 PM