ID:

dsi_24835

 Coordinate:

3l:15927142-15927201 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_15927202_15927213_-]; five_prime_UTR [3l_15927214_15927271_-]; CDS [3l_15926743_15927141_-]; exon [3l_15926672_15927141_-]; exon [3l_15927202_15927271_-]; intron [3l_15927142_15927201_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------##################################################
TACCCCAAAAACAACCAACCAACCAAACCTTATTCAAGATGTTCAAATTTGTAAGTCCAAAGGATTTGTGATAAAATTAAGAACTTGGCATTAATTTGTTACTCCCAAAGGTTGCCGTCATCGCTCTTCTGGTCGCCACCGCCAGCGCTGGTCTGATCGA
**************************************************..............((((((((.(((((((..........)))))))))))).....)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
...........................................................................................................................ATCTTCTAGTCGGCACCG................... 18 3 20 1.30 26 26 0 0 0 0 0
.....................................................................................................................................CGCCACCGCCAGCGCTGGTCT...... 21 0 2 1.00 2 0 2 0 0 0 0
...........................................................................................................................CTCTTCTGGTCACCA...................... 15 1 12 0.42 5 0 0 5 0 0 0
................................................................................................................TGCCGTCTTCTCTCTCCTGGT........................... 21 3 4 0.25 1 0 0 0 1 0 0
........................................GTTCACAGTTGTAAGTC....................................................................................................... 17 2 15 0.07 1 0 0 0 0 1 0
..........................................................AAATGACTTGTGATAAAA.................................................................................... 18 2 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

ATGGGGTTTTTGTTGGTTGGTTGGTTTGGAATAAGTTCTACAAGTTTAAACATTCAGGTTTCCTAAACACTATTTTAATTCTTGAACCGTAATTAAACAATGAGGGTTTCCAACGGCAGTAGCGAGAAGACCAGCGGTGGCGGTCGCGACCAGACTAGCT
**************************************************..............((((((((.(((((((..........)))))))))))).....)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 M023
head
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
......................................................................................................AGGGATTGCAACGGCAGTTG...................................... 20 3 2 2.50 5 1 0 0 0 0 2 2 0 0
....................................................................................................TGAGGGATTGCAACGGCAGTTG...................................... 22 3 1 2.00 2 2 0 0 0 0 0 0 0 0
....................................................................................................TGAGGGATTGCAACGGCAGT........................................ 20 2 1 2.00 2 1 1 0 0 0 0 0 0 0
.................................................................................................................CGGCAGTAGCGAGAAGACCAGC......................... 22 0 1 2.00 2 0 0 0 2 0 0 0 0 0
......................................................................................................AGGGATTGCAACGGCAGT........................................ 18 2 3 1.67 5 3 2 0 0 0 0 0 0 0
................................................................................................................ACGGCAGTAGCGAGAGGACCAG.......................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................GGCGGTCGCGACCAGACTA... 19 0 2 1.00 2 0 0 0 0 2 0 0 0 0
.................................................................................................................CGGCAGTAGCGAGAGGACCAG.......................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................AGCGAGAAGACCAGCGGTGGC................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
......................................................................................................AGGGATTGCAACGGCAGTT....................................... 19 3 6 0.50 3 1 0 0 0 0 2 0 0 0
....................................................................................................TGAGGGATTGCAACGGC........................................... 17 2 5 0.40 2 1 1 0 0 0 0 0 0 0
......................................................................................................AGGGATTGCAACGGCAG......................................... 17 2 9 0.33 3 0 1 0 0 0 2 0 0 0
.......................................................................................................GGGATTGCAACGGCAGTC....................................... 18 3 20 0.30 6 1 3 0 0 0 1 1 0 0
....................................................................................................TGAGGGATTGCAACGGCA.......................................... 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................CGAGAAGGCTAGCGGTGCCG.................. 20 3 5 0.20 1 0 0 0 0 0 0 0 1 0
.......................................................................................................GGGATTGCAACGGCAGTCG...................................... 19 3 12 0.17 2 0 1 0 0 0 0 1 0 0
.........................................................................................................GCTTCAAACGGCAATAGCGA................................... 20 3 8 0.13 1 0 0 1 0 0 0 0 0 0
.....................................................................................................GAGGGATTGCAACGGCA.......................................... 17 2 8 0.13 1 0 0 0 0 0 1 0 0 0
......................................................................................................AGGGATTGCAACGGCAGTC....................................... 19 3 9 0.11 1 0 0 0 0 0 1 0 0 0
......................................................................................................AGGGTTTCTCACGGCAG......................................... 17 2 11 0.09 1 0 0 0 0 0 0 0 0 1
........................................................................................................GGATTGCAACGGCAGT........................................ 16 2 18 0.06 1 0 0 0 0 0 0 1 0 0
.......................................................................................................GGGATTGCAACGGCAG......................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0
.....................................................................................................GAGGGATTGCAACGGC........................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0

Generated: 04/23/2015 at 10:44 PM