ID:

dsi_24830

 Coordinate:

3r:4421828-4422044 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-42.5 -42.5 -42.5

Flybase annnotation

exon [3r_4421736_4421827_+]; CDS [3r_4421736_4421827_+]; CDS [3r_4422045_4422115_+]; exon [3r_4422045_4422115_+]; intron [3r_4421828_4422044_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGATACACATGGCTGCCTGCATGGGCAATCAGCGTTTGATGAACAGCCGGGTAAGTACTTGGCCGCAACTAGTTGGGTCACTTATCAAAAGGTCTTAGAGAATCACAAATTAGGCGAACTTTTTGACACATTTTAAAGCATCACAGATACCGCCATAAACGGACTGACTTTATCAAATTACGTGACTGACCACATATGGTTCTTGGGGGCTTTGAGGGCTTATGCCTACTTCATCAGCTAGGTACTCAAGGTATTCTCTGTTTACAGTGGGTGCAGCGTTTCGTGTTGCCAAGCCAGAACAGCTTTTCGATAAAGAA
**************************************************...((((((((((.......(((.((((......((..((((((((.((((((((((((..((.....)).))))..................(((...(((.......))).)))...............(((......)))...)))))))).))))))))..))......)))))))......)))))))))).....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M025
embryo
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
.........................TATTCAGCGTTTGATGAA.................................................................................................................................................................................................................................................................................. 18 2 5 37.20 186 66 63 57 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................GGTGGGTGCAGCGTTTCGTGTTGT............................ 24 2 1 1.00 1 0 0 0 1 0 0 0 0 0
TGATACACATGGCTGCCTGCATGGGC................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0
............................................................................................................................................................AAACGGACTGACTTTATC............................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................AATCAGCGTTTGATGAAC................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................GTTTGATGAACAGCCGG........................................................................................................................................................................................................................................................................... 17 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.....................TGGGCAATCAGCGTTTGATGAACAGCCG............................................................................................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0
.......................GGCAATCAGCGTTTGA...................................................................................................................................................................................................................................................................................... 16 0 2 0.50 1 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................TGATTGACTACATATGGT..................................................................................................................... 18 2 4 0.50 2 0 0 0 0 2 0 0 0 0
.............................................................................................................................................................................................................................................................................GGTGCAGCGTTGCGTG................................ 16 1 6 0.33 2 0 0 0 0 0 0 0 2 0
............................................AGCCCGGTTAGTACTTG................................................................................................................................................................................................................................................................ 17 2 8 0.13 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................................................................TGCAGCGTTGCGTGTT.............................. 16 1 10 0.10 1 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................TGATTGACTACATATGGTTG................................................................................................................... 20 3 11 0.09 1 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................................................................GGTGCAGCGTTGCGT................................. 15 1 11 0.09 1 0 0 0 0 0 1 0 0 0
.............................................GCCCGGTTAGTACTTGG............................................................................................................................................................................................................................................................... 17 2 12 0.08 1 0 0 0 0 0 0 0 1 0
............................................AGCCTGGTTAGTACTTGGA.............................................................................................................................................................................................................................................................. 19 3 14 0.07 1 0 0 0 0 0 0 0 1 0
.............................................................................................................TTGGGCGTACTTTTTGACTC............................................................................................................................................................................................ 20 3 15 0.07 1 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................................................................TAGGTGCAGCGTTGCGTGG............................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0
...........................................................................GGTCACTTATCCGAAG.................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

ACTATGTGTACCGACGGACGTACCCGTTAGTCGCAAACTACTTGTCGGCCCATTCATGAACCGGCGTTGATCAACCCAGTGAATAGTTTTCCAGAATCTCTTAGTGTTTAATCCGCTTGAAAAACTGTGTAAAATTTCGTAGTGTCTATGGCGGTATTTGCCTGACTGAAATAGTTTAATGCACTGACTGGTGTATACCAAGAACCCCCGAAACTCCCGAATACGGATGAAGTAGTCGATCCATGAGTTCCATAAGAGACAAATGTCACCCACGTCGCAAAGCACAACGGTTCGGTCTTGTCGAAAAGCTATTTCTT
**************************************************...((((((((((.......(((.((((......((..((((((((.((((((((((((..((.....)).))))..................(((...(((.......))).)))...............(((......)))...)))))))).))))))))..))......)))))))......)))))))))).....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
..................................................CATTCAAGAACCAGCGTT......................................................................................................................................................................................................................................................... 18 2 3 0.33 1 0 1 0 0 0
....................................................................................................................................................................AGTGAAATAGTTTAA.......................................................................................................................................... 15 1 20 0.25 5 5 0 0 0 0
................................................................................................................................................................CCTGTCTGGAAGAGTTTAA.......................................................................................................................................... 19 3 20 0.10 2 1 0 1 0 0
...................................................................TGATCCCGCCAGTGAATAG....................................................................................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 1 0
....................................................................................................................................................................AGTGAAATAGTTTAAT......................................................................................................................................... 16 1 18 0.06 1 1 0 0 0 0
.....................................................................................................................TGAAAAAGTCTGTAAAATT..................................................................................................................................................................................... 19 2 19 0.05 1 1 0 0 0 0
.............................................................................................................................................................................................................................TACGGGTTAAGTAGTCTAT............................................................................. 19 3 20 0.05 1 0 0 0 0 1
.......................................................................................................................AAAAACTGTGTACAATGT.................................................................................................................................................................................... 18 2 20 0.05 1 0 0 1 0 0

Generated: 04/24/2015 at 07:11 AM