ID:

dsi_24829

 Coordinate:

3r:10480280-10480338 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-12.6

Flybase annnotation

five_prime_UTR [3r_10480339_10480357_+]; CDS [3r_10480358_10480996_+]; five_prime_UTR [3r_10480156_10480279_+]; exon [3r_10480156_10480279_+]; exon [3r_10480339_10481018_+]; intron [3r_10480280_10480338_+]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------##################################################
ACGGAGCAGTCACCTGTCGGCCAAGAAAATACAATTACGCCTGCAATTCGGTGAGTGTCAGCTGGAAAATTTGGAAATCCGGACGTGCTAACGCTCCCCCGATCCGCAGACAGTGAACAAATAGCAAGATGGCGGCCCAAATACGCACCGTGGTGTCCC
**************************************************..((((((.(((((.....(((((....))))))).))).)))))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 M024
male body		 M053
female body
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
.......AGTCACCTGTCGGCCAAGA..................................................................................................................................... 19 0 1 8.00 8 4 0 4 0 0 0 0 0
...........ACCTGTCGGCCAAGAAAA.................................................................................................................................. 18 0 1 6.00 6 2 4 0 0 0 0 0 0
..........CACCTGTCGGCCAAGAAAATACAAT............................................................................................................................ 25 0 1 5.00 5 1 2 2 0 0 0 0 0
....AGCAGTCACCTGTCGGCC......................................................................................................................................... 18 0 1 4.00 4 3 1 0 0 0 0 0 0
..................................................................................................................GAACAAATAGCAAGATGGCGGC....................... 22 0 1 4.00 4 3 0 0 0 1 0 0 0
..........CACCTGTCGGCCAAGAAAATAC............................................................................................................................... 22 0 1 4.00 4 4 0 0 0 0 0 0 0
........GTCACCTGTCGGCCAAGA..................................................................................................................................... 18 0 1 4.00 4 2 0 1 0 0 1 0 0
...........ACCTGTCGGCCAAGAAAATACAA............................................................................................................................. 23 0 1 3.00 3 0 3 0 0 0 0 0 0
...........ACCTGTCGGCCAAGAAAATACAAT............................................................................................................................ 24 0 1 3.00 3 0 2 1 0 0 0 0 0
.CGGAGCAGTCACCTGTCGGCC......................................................................................................................................... 21 0 1 3.00 3 2 1 0 0 0 0 0 0
......................................................GTGTCAGCTGGAAAATTTGGAAATC................................................................................ 25 0 1 3.00 3 3 0 0 0 0 0 0 0
...........ACCTGTCGGCCAAGAAAATACAATT........................................................................................................................... 25 0 1 3.00 3 0 3 0 0 0 0 0 0
..................................................................................................................GAACAAATAGCAAGATGGC.......................... 19 0 1 3.00 3 0 0 0 1 2 0 0 0
.........TCACCTGTCGGCCAAGAAAA.................................................................................................................................. 20 0 1 3.00 3 0 3 0 0 0 0 0 0
...............................................................................................................AGTGAACAAATAGCAAGATGGCGGC....................... 25 0 1 3.00 3 3 0 0 0 0 0 0 0
...........ACCTGTCGGCCAAGAAAAT................................................................................................................................. 19 0 1 2.00 2 2 0 0 0 0 0 0 0
.......AGTCACCTGTCGGCCAAGG..................................................................................................................................... 19 1 1 2.00 2 1 0 1 0 0 0 0 0
.......AGTCACCTGTCGGCCAAG...................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0
...........................................................AGCTGGAAAATTTGGAAATC................................................................................ 20 0 1 2.00 2 2 0 0 0 0 0 0 0
...........................................................................................................CGACAGTGAACAAATAGCAAGAT............................. 23 1 1 2.00 2 0 0 1 1 0 0 0 0
.........TCACCTGTCGGCCAAGAAAATAC............................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0
........................................................................................................................ATAGCAAGATGGCGGCCCA.................... 19 0 1 2.00 2 0 0 0 1 1 0 0 0
..................................................................................................................GAACAAATAGCAAGATGGCGGCC...................... 23 0 1 2.00 2 1 0 1 0 0 0 0 0
..................................................................................................................GAACAAATAGCAAGATGGCG......................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0
.....................................................................................................................CAAATAGCAAGATGGCGGCC...................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................GTGAACAAATAGCAAGATGGC.......................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.......AGTCACCTGTCGGCCAAGAAAATAC............................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0
......................................................................................................................................GCCCAAATACGCACCGTGGT..... 20 0 1 1.00 1 0 0 0 1 0 0 0 0
................................................................................................................GTGAACAAATAGCAAGATGGCG......................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0
.........TCACCTGTCGGCCAAGAA.................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................................................................AATAGCAAGATGGCGGCCCA.................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0
......................................................................TTGGAAATCCGGACGTGCTAACGCT................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................AAATAGCAAGATGGCGGC....................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
..GGAGCAGTCACCTGTCGGC.......................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................................GGTGAGTGTCAGCTGGAAAA.......................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
.CGGAGCAGTCACCTGTCGGC.......................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0
............................................................................................GCTCCCCCGATCCGCAGACAGT............................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0
..........CACCTGTCGGCCAAGAAA................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0
.............CTGTCGGCCAAGAAAATACAATTACG........................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................ACAAATAGCAAGATGGCGGCC...................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
........GTCACCTGTCGGCCAAGAAAA.................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...............GTCGGCCAAGAAAATACAATTACG........................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................AATAGCAAGATGGCGGCC...................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................CAGTGAACAAATAGCAAGAT............................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0
.......AGTCACCTGTCGGCCAAGAAAATACAAT............................................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 0 1 0
...............................................................................................................AGTGAACAAATAGCAAGATG............................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0
............................................................................................................GACAGTGAACAAATAGCAAGAT............................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................GTGAACAAATAGCAAGATGGCGGCC...................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................CAAGAAAATACAATTACGCCTG.................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0
..................................................................................................................GAACAAATAGCAAGATGGCGAC....................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0
..........CACCTGTCGGCCAAGAAAATACAA............................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................CGACAGTGAACAAATAGCAAGATGGC.......................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................TGGAAATCCGGACGTGCTAACGCTCC.............................................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0
.....................................................................................................................CAAATAGCAAGATGGCGGC....................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................CAATTACGCCTGCAATTCGGTG.......................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0
.........................AAAATACAATTACGCCTG.................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0
.............CTGTCGGCCAAGAAAATACA.............................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0
...........ACCTGTCGGCCAAGAAAATACAATTACG........................................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 0 0 1
............................................................................................................GACAGTGAACAAATAGCAA................................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0
ACGGAGCAGTCACCTGTCGGCC......................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0
...................................................................................................................AACAAATAGCAAGATGGC.......................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
...........ACCTGTCGGCCAAGAAAATACAATTA.......................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
..GGAGCAGTCACCTGTCGGCC......................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................GCCTGCAATTCGGTGAGTGTCAG.................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................TTGGAAATCCGGACGTGCTAACGCC................................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0
......................................GCCTGCAATTCGGTGAGTGTCAGCTG............................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0
...............................................................GGAAAATTTGGAAATCCGGACG.......................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................AGCAGTTCGGTGAGTGTC.................................................................................................... 18 2 8 0.13 1 0 1 0 0 0 0 0 0
............................................................GCTGGAACATTTGGAA................................................................................... 16 1 10 0.10 1 0 0 0 0 0 1 0 0
..........................................................CAGCTGGAAAAATTGGAT................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 1 0
.....GCAATCACCTGTCGTCGAA....................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0

Anti-sense strand reads

TGCCTCGTCAGTGGACAGCCGGTTCTTTTATGTTAATGCGGACGTTAAGCCACTCACAGTCGACCTTTTAAACCTTTAGGCCTGCACGATTGCGAGGGGGCTAGGCGTCTGTCACTTGTTTATCGTTCTACCGCCGGGTTTATGCGTGGCACCACAGGG
**************************************************..((((((.(((((.....(((((....))))))).))).)))))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
...........GGGACAGCCATTTCTTTTATGT.............................................................................................................................. 22 3 1 1.00 1 0 1 0 0 0
.......................................................................................................GGCGTCTGTCAGTTGTTTGTCGT................................. 23 2 1 1.00 1 1 0 0 0 0
...............................................................................................GGGGGCTAGAAGTCTGTC.............................................. 18 2 3 0.67 2 1 0 0 1 0
..............................................................................................AGGGGGCTAGAAGTCTGTC.............................................. 19 2 2 0.50 1 0 0 1 0 0
...........TGGAGAGCCGGATCTTTTAAG............................................................................................................................... 21 3 5 0.20 1 0 1 0 0 0
.....................................................................................................TCGGCGTCTGTCAGTTGTTTGT.................................... 22 3 6 0.17 1 1 0 0 0 0
.........AGTGGACTGCAGATTCTTT................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 1
...........TGGACAGCCGGTTCC..................................................................................................................................... 15 1 13 0.08 1 0 0 0 1 0

Generated: 04/24/2015 at 10:41 AM