ID:

dsi_24820

 Coordinate:

3r:15771993-15772142 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.7 -7.6 -7.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GAAGTGTGCGTTATTTTAGAAGTTTTAATTTGGATTCGTTCAAGTCTCAAGTGAGTGTCGTGCCGTTAAGTGCTGGGAATCATCGCCACTGACAGTTTGTTATTCGAGAGCCCCACAAAGTGGTTCCCCACCCAAGCCCCAATCTATCTCCTCCTCAAAAAAAAAAGTGTTTCGTGCTTTAATGTTACATATATGTATATGTACATATGTGCAACTGGCGCCCGAGCAGGGACCTTCTATGCAGATATGT
*****************************************************((((.((.((.((((.(((.(((......))).))))))).)).)).))))........****************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 GSM343915
embryo
 M023
head
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
...........................................GTCTCAAGTGAGTGTCGTGC........................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.....................................................AGTGTCGTGCCGTTAAGTGCT................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................GTTTGTTATTCGAGAGCC.......................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0
..................................................................................................................................................................................TTAATGTTTCAATTATGTATATGTA............................................... 25 3 1 1.00 1 0 0 0 0 1 0
.......................TTTAATTTGGATTCGTTCA................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 1 0 0
.....................GTTTTAATTTGGATTCGTTCAAGT............................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
....TGTGCGATATTTTTGAAGGTTT................................................................................................................................................................................................................................ 22 3 3 0.33 1 0 1 0 0 0 0
..........................................................................................................................................................................................................ACATATGTGCAAGGGGCG.............................. 18 2 8 0.13 1 0 0 0 0 0 1
................................................................................................................................................TATCTCCTTCTTAAAAAAA....................................................................................... 19 2 11 0.09 1 0 0 0 0 0 1
..............................................................................................................................................TATATCTCCTTCTTAAAAAAA....................................................................................... 21 3 18 0.06 1 0 0 0 0 0 1

Anti-sense strand reads

CTTCACACGCAATAAAATCTTCAAAATTAAACCTAAGCAAGTTCAGAGTTCACTCACAGCACGGCAATTCACGACCCTTAGTAGCGGTGACTGTCAAACAATAAGCTCTCGGGGTGTTTCACCAAGGGGTGGGTTCGGGGTTAGATAGAGGAGGAGTTTTTTTTTTCACAAAGCACGAAATTACAATGTATATACATATACATGTATACACGTTGACCGCGGGCTCGTCCCTGGAAGATACGTCTATACA
******************************************************************************************************************************************((((.((.((.((((.(((.(((......))).))))))).)).)).))))........***************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 O001
Testis
 O002
Head
 M024
male body		 SRR902009
testis
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
.......................................................................................................................................................................................................................ACCGCGGGCTCGTCCCTGGA............... 20 0 4 25.75 103 45 17 10 14 4 10 0 0 0 2 0 0 1 0
.......................................................................................................................................................................................................................ACCGCGGGCTCGTCCCTGGAC.............. 21 1 5 9.60 48 9 22 15 0 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................ACCGCGGGCTCGTCCCTG................. 18 0 13 5.85 76 40 12 6 0 12 0 0 0 6 0 0 0 0 0
.......................................................................................................................................................................................................................ACCGCGGGCTCGTCCCTGG................ 19 0 8 4.63 37 24 7 5 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................ACCGCGGGCTCGTCCCTGAA............... 20 1 8 2.63 21 14 0 7 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACCGCGGGCTCGTCCCT.................. 17 0 17 1.71 29 22 0 0 2 0 3 0 0 0 0 0 2 0 0
.......................................................................................................................................................................................................................ACCGCGGGCTCGTCCCTGTA............... 20 1 8 1.50 12 11 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TAGATAGAGGAGGAGTTT........................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GCCGCGGGCTCGTCCCTGGA............... 20 1 4 1.00 4 2 0 2 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GACCGCGGGCTCGTCCCTG................. 19 0 2 1.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0
.....................................................................................................................................................................................................................TGACCGCGGGCTCGTC..................... 16 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACCGCGGGCTCGTCC.................... 15 0 20 0.80 16 11 0 0 1 0 0 0 0 0 0 0 3 0 1
.......................................................................................................................................................................................................................ACCGCGGGCTCGTCCC................... 16 0 17 0.65 11 7 0 0 3 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................ACCGCGGGCTCGTCCCTGTAC.............. 21 2 11 0.64 7 2 1 4 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GCGGGCTCGTCCCTGGAC.............. 18 1 6 0.50 3 0 2 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACCGCGGGCTTGTCCCTGGAAGG............ 23 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CGCGGGCTCGTCCCTGGA............... 18 0 4 0.50 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GCCGCGGGCTCGTCCCTGGAC.............. 21 2 5 0.40 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CGGGCTCGTCCCTGGAA.............. 17 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CCGCGGGCTCGTCCCTGG................ 18 0 8 0.25 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CCGCGGGCTCGTCCCTGGA............... 19 0 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................GACCGCGGGCTCGTCCCTGAAC.............. 22 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACCGCGGACTCGTCCCTGGA............... 20 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CCGCGGGCTCGTCCCTG................. 17 0 13 0.23 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CGCGGGCTCGTCCCTGGAC.............. 19 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACCGCTGGCTCGTCCCTGGAC.............. 21 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACCGCGGGCTGGTCCCTGGA............... 20 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACCGCGGTCTCGTCCCTGGAC.............. 21 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................CCAGGGGGTAGGTTCGTGGTT............................................................................................................ 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................TTTACCGCGGGCTCGTCCCTG................. 21 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACCGCGGGCTCGTCCCTGGACC............. 22 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACCGCGTGCTCGTCCCTG................. 18 1 13 0.15 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................AGATAGAGGAAGAATTT........................................................................................... 17 2 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACCGCTGGCTCGTCCCTG................. 18 1 15 0.13 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................ATGGGGGTTAGATAGAGGGG................................................................................................. 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................TGAGGGGTGGGTTCGGGGT............................................................................................................. 19 2 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................GCCGCGGGCTCGTCCCTGG................ 19 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CCGCGGGCTCGTCCCTGAA............... 19 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TACATATACATGTATACA........................................ 18 0 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TCGGCCCGGGAAGATA.......... 16 2 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GCCGCGGGCTCGTCCCTG................. 18 1 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACCGCGGGCTCTTCCCTG................. 18 1 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CCGCGGGCTCGTCCCT.................. 16 0 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CCGCGGGCTCGTCCC................... 15 0 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACCGCGGTCCCGTCCCTG................. 18 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACCGCGGGCTCGTCCCCG................. 18 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACCGCGGGCTCGTCACT.................. 17 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TGTATATACATATACAT............................................... 17 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACCGCGGGCTCGTCCTTG................. 18 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CCGTCGACCGCGGGCTTGT...................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................AGTAGCGGAGACTGGC........................................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:15771943-15772192 - dsi_24820 GA--------------------------------------------------AGTGTGC-GTTATT-------TTAGAAGTTTTAATT---------------T-GGATTC--------G----TTCAAGTCTCAAGTGAGTGT--------CGTGCCGTTAAGTGCTGGGAATC---ATCGCC-----------ACTGACAGT-TTGTTATTCGAGAGCC------------------------------------------CC----ACAAAGTGGTTC-------------------------C-----CCACC-----C-----------AAGCCCCAATCTATC----------TCCTCCTC-------AA------AAAAAAAAG----TGTTT-CGT--GCTTTAATGTTACATATATGT--ATA-TGTACA--------------------TATGTGCA-----------ACTGGCGCCCGAGCAGGGACCTTCT-ATGCAGATA--TGT
droSec2 scaffold_0:16641185-16641452 - GA--------------------------------------------------AGTGTGC-GTTATT-------TTAGAAGTTTTAATT---------------T-GGATTC--------G----TTCAAGTCTCAAGTGAGTGT--------CGTGCCGTTAAGTGCTGGGAATC---ATCGCC-----------ACTGACAGT-TTGTTATTCGAGAGCC------------------------------------------CC----ACAAAGTGGTTC-------------------------C-----CCACC-----C-----------AAGCCCCAATCTATC----------TCCTCCTC-------A--------AAAAAAAG----TGTTT-CGT--GCTTTAATGTTACATATATGT--ATA-TATATGTGTATGTATGTATGTATGCATATGTGCA-----------ACTGGCGCCCGAGCAGGGACCTTCT-ATGCAGATA--TGT
dm3 chr3R:5254325-5254572 + GA--------------------------------------------------AGTGTGC-GTTATT-------TTAGAAGTTTTAATT---------------T-GGATTC--------G----TTCAAGTCTCAAGTGAGTGT--------CGTGTCGTTAAGTGCTGGGAATC---ATCGCC-----------ACTGACAGT-TTGTTATTTGAGAGCC------------------------------------------CC----ACAAATTGGTTC-------------------------C-----CCACC-----C-----------AAGCCCCAATCTATC----------TCCTCGTT-------A---------AAAAAAG----TGTTT-CGT--GCTTTAATGTTACACATATGT--ACAATATATG--------------------TATGTGGA-----------ACTGGCGCCCGAGCAGGGACCTTCT-ATGCAGATA--TGT
droEre2 scaffold_4770:16349139-16349397 - GA--------------------------------------------------AGTGTGC-GTTATT-------TTAGAAGTTTCAATT---------------T-GGAATC--------G----TACAAGTCTCAAGTGAGTGT--------CGTGTCGTTAAGTGCTGGGAATC---ATCGCC-----------ACTGACAGT-TTGTTATTTGAGAGCC------------------------------------------CC----ACAAAGTGGTTC-------------------------CC----CCACC-----C-----------AAGCCCCAAACTCTCCCCCCCACCCC---CTCCAGCCCACTAAACA--CAAAAAAAG----TGTTT-CGT--GCTTTAATGTTACATATAT-------------G--------------------TATCTGCA-----------ACTGGCGCCCGAGCAGGGACCTTCT-ATGCAGATG--TGT
droYak3 3R:9301519-9301765 + GA--------------------------------------------------AGTGTGC-GTTATT-------TTAGAAGTTTTAATT---------------T-GGAATC--------G----TACAAGTCTCAAGTGAGTGT--------CGTGTTGTTAAGTGCTGGGAATC---ATCGCC-----------CCTGACAGT-TTGTTATTTGAGAGCC------------------------------------------CC----ACAAAGTGGTTTTC-----------------------CC----CCACC-----C-----------AAGCCCCAAAC--------------TCCTCCCC-------A--------AAAAAAAT----TGTTT-CGT--GCTTTAATTTTACATATACGT--TTA-TGAATG--------------------TATGTGCA-----------ACTGGCGCCCGAGCAGGGACCTTCT-ATGCAGATA--TGT
droEug1 scf7180000407136:445126-445376 - GA--------------------------------------------------AGTGTGC-GTTATT-------TCAGAAGTTTCAAAA---------AAAAATT-GGAATTAC------A----AAAAAGTCTCAAGTGAGTGT--------CGTGTTGTTAAGTGCTGGGAATCATCATCACC-----------ACTGACAGT-TTGTTATTTGAGAGTC-----------------------------------------TCC----ACAAAGGTGCTC-------------------------C-----CT--TCAGCCCGTTCCATTT--GACTCCCAAA-TATC----------TCCCCCCC-------AA-------AATAAAAG----TGTTT-CGT--TCT-GGTTATTACATATA--------------------------------------------------------TGGCGCTTGAGCTGGGACCCTCT-ATGCAGATATTTGT
droBia1 scf7180000302402:7990392-7990574 + GACC----------------------------------------------GAAGTGTGC-GTTATT-------TCAGAAGTTTCAATT---------------T-GGAATG--------G----TACAAGTCTCAAGTGAGTGT--------CGTGTCGCTAAGTGCTGGGAATCATCATCGTC-----------ACTGACAGT-TTGTTATTTGAGAGCC------------------------------------------CC----ACAAAGTGGTTG-------------------------G-----CC-CC-----C-----------AACCCCC--------------------------------------------AAAAAG----TGTTT---------------TTACATATAC------------------------------------------------------ATGGCGCCCGAACAG-----------------------T
droTak1 scf7180000415811:287044-287261 - GA--------------------------------------------------AGTGTGC-GTTGTT-------TCAGAAGTTTCAATT---------------T-GGAATT--------G----TACAAGTCTCAAGTGAGTGT--------CGTGTCGTTAAGTGCTGGGAATCATCATCGCC-----------ACTGACAGT-TTGTTATTTGAGAGCC------------------------------------------CC----ACAAAGTGGTTC-------------------------C-----CC--C-----C-----------GATCCCAAAA--ACC----------C---CCCCA-------G--CT-C--CAGAAAG----TGTTT---T--TCCCTAA------GTATA------------------------------------------------------CATGGCGCCCGAGCAGGGAC-TTCT-ATGCATATT--CGT
droEle1 scf7180000491194:425470-425700 + GA--------------------------------------------------AGTGTGT-GTTATT-------TCAGAAGTTTCAATTTGG---------------TGGGC-AACTGCCG----TTCAAGTCTCAAGTGAGTGT--------CGTGTCGTTAAGTGCTGGGAATC---ATCGCC-----------ACTGACAGT-TCGCTATTTGAGAGCC------------------------------------------CC----ACAAAGTGGTTGCA-C---------------------C-----C--CC-----T-----------AATACCCA-------------------CACCACA-------A--TT-CCAAAAAAAG----TGTTT-CGT--GCCTTGATATAACATGTAT------------------------------------------------------GTGGTGCCCACG-AGGGGCA-TTT-ATGCAGATA--TGT
droRho1 scf7180000779488:472975-473197 + GA--------------------------------------------------AGTGTGT-GTTATT-------TCAGAAGTTACAATTTGG------------T-GGAACC--------G----TTCAAGTTTCAAGTGAGTGT--------CGTGTCGTTAAGTGCTGGGAATC---ATCGCC-----------ACTGACAGT-TGGTTATTTGAGAGCC------------------------------------------CC----ACAAAGTGGTTC-------------------------C-----CC--C-----C-----------GGTTCT------A----GGTC----CACCCCCCA-------A-------ATAAATAG----TCTTT-CGT--GCCTAGATGTAACATATAT------------------------------------------------------GTGGCGCCCGACGAGGGGCA-TTT-ATGCAGATA--T--
droFic1 scf7180000454106:1935434-1935677 - GA--------------------------------------------------AGTGTGC-GTTATT-------TCAGAAGTTTCAGTTTGA---AAT-----TT-GGAAGT--------G----TTCAAGTCTCAAGTGAGTGT--------CGTGTCGTTAAGTGCTGGGAATC---ATCGCC-----------ACTGACAGT-TTGTTATTTGAGAGTC------------------------------------------CC----ACAAAGTGCTCC-------------------------A-----TCCCC-----C-----------GCCACCCAATCCGCC----------CCCCTAAC-------AAAAAA--AAAGAAAAG----TGTTT-CGT--GCCTGGATGTTACATATAC--AT-------------------------------------A-----------AGTGGCGCCCAGCCAGGGACACCCGAATGCAGAT----GT
droKik1 scf7180000302388:1830651-1830871 - GA--------------------------------------------------AGTGTGT-GTTTTT---TATGTCAGAACTTTCAATT---------------TTGGAACC-CACAACCGTTCGT-------TCAAGTGAGTGT--------CG--TCGTTAAGTGCTGGGCCCC---ATCAACATCAACAACTAACTGACAGTTTTGTTATTTGAGAACC------------------------------------------CC----GCAAAGCGGTTGA-GGCTGTG--------------------------------------------------------------------------AAC-------AAAATAAAGAAAAAAAGCCGCTGTTCCCGTGAGCTTTGATGTG-------TGT----------TC--------------------TCTG---------------TGTGGCGCCCTAG---------------------------
droAna3 scaffold_13340:4793612-4793798 - TA--------------------------------------------------ATTAAGT-GTCATTTTTT---GAGGAACTTTCAGCT---------------TTGGAAGC--------G----------TCTCAAGTGAGTGT--------CGTGCCGTTAAGTGCTTGGAATC-TCATTGCC-----------ACTGACAGT-TTGTTATTTGAGAGCT------------------------------------------CC----ACAAAGTGGTGG-----------GTTGGGGTCG--------------------------------------------A----GGTC----T--------------------------------------------------------TCCCTCTAT--AT-------------------------------------AGACCTTCCCCCTGTGGCGCCCCAGCT------CTCT-AT------------
droBip1 scf7180000396359:396488-396733 + GAAA------------------------------------------TAATAAAG--TGT-ATTTTT---T---GAAGAACTTTCAATT---------------TAGGAAGC--------G----TCCAATTCTCAAGTGAGTGT--------CGTGTCGTTAAGTGCTGGGAATC---ATATCC-----------ACTGACAGT-TTGTTATTTGAGAGCT------------------------------------------CCACACACAAAGTGGTTTG-GGGTTTGGGGTTGGGGACGGGGCCTCGGCCT--TC-G--CCTTCCCCTTGCCTGCCCC------TC----------C---CCCCA---------------------GC----TGTTT-CGT--GCTTTGAGGTA-C---TGT--TT-------------------------------------------------GGTGGCGCCCGAGCTCTT---------------------G
dp5 2:3165640-3165916 - GTTGCCTCCCGCTTCTTCCCGCCCGCTCGCCCGCTCGGCCGCTCGCT-----AATGTACGAGTATT-------TTTGAAGTTTCCATTCGGCGGAATATCCAT-CGGAATT--------G----T-------TGAAGTGAGTGTCGCTTTATCGTGTCATTGAGTGCTGGGAATC---ATTGCC-----------GCTGACAAT-TTGTTATGTGAGATGAGGGGGGAGGCCTCCCCCGACCACCCCCGGCCCCCCCCTGACCGCACTCGTAGAGTGGTTG------------------------------------------------------------------------------------------------------------------------AGG--GCCTGCACTCGAAATTTGT--GT-------------------------------------------------GGTGGCGCCCCAAAACAGA---------------------
droPer2 scaffold_7:1176103-1176379 + GTTGCCTCCCGCTTCTTCCCGCCCGCTCGCCCGCTCGGCCGCTCGCT-----AATGTACGAGTATT-------TTTGAAGTTTCCATTCGGCGGAATATCCAT-CGGAATT--------G----T-------TGAAGTGAGTGTCGCTTTATCGTGTCATTGAGTGCTGGGAATC---ATTGCC-----------GCTGACAAT-TTGTTATGTGAGAAGAGGGGGGAGGCCTCCCCCGACCATCCCCGGCCCCCCCCTGACCGCACTCGTAGAGTGGTTG------------------------------------------------------------------------------------------------------------------------AGG--GCCTGCACTCGAAATTTGT--GT-------------------------------------------------GGTGGCGCCCCAAAACAGA---------------------
droGri2 scaffold_14906:5657447-5657474 - TA--------------------------------------------------TATATAT-GT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA-TATATA--------------------TATATGCA---------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GA--------------------------------------------------AGTGTGC-GTTATT-------TTAGAAGTTTTAATT---------------T-GGATTC--------G----TTCAAGTCTCAAGTGAGTGT--------CGTGCCGTTAAGTGCTGGGAATC---ATCGCC-----------ACTGACAGT-TTGTTATTCGAGAGCC------------------------------------------CC----ACAAAGTGGTTC-------------------------C-----CCACC-----C-----------AAGCCCCAATCTATC----------TCCTCCTC-------AA------AAAAAAAAG----TGTTT-CGT--GCTTTAATGTTACATATATGT--ATA-TGTACA--------------------TATGTGCA-----------ACTGGCGCCCGAGCAGGGACCTTCT-ATGCAGATA--TGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................GTCTCAAGTGAGTGT--------CGTGC.........................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
...........................................................................................................................................AGTGT--------CGTGCCGTTAAGTGCT..............................................................................................................................................................................................................................................................................................................................................................2111.00100000000000100000
..........................................................................................................................................................................................................GT-TTGTTATTCGAGAGCC------------------------------------------...............................................................................................................................................................................................................................................................1811.00110000000000000000
.................................................................................TTTAATT---------------T-GGATTC--------G----TTCA......................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
...............................................................................GTTTTAATT---------------T-GGATTC--------G----TTCAAGT...................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
droSec2
GA--------------------------------------------------AGTGTGC-GTTATT-------TTAGAAGTTTTAATT---------------T-GGATTC--------G----TTCAAGTCTCAAGTGAGTGT--------CGTGCCGTTAAGTGCTGGGAATC---ATCGCC-----------ACTGACAGT-TTGTTATTCGAGAGCC------------------------------------------CC----ACAAAGTGGTTC-------------------------C-----CCACC-----C-----------AAGCCCCAATCTATC----------TCCTCCTC-------A--------AAAAAAAG----TGTTT-CGT--GCTTTAATGTTACATATATGT--ATA-TATATGTGTATGTATGTATGTATGCATATGTGCA-----------ACTGGCGCCCGAGCAGGGACCTTCT-ATGCAGATA--TGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................GT-TTGTTATTCGAGAGCC------------------------------------------CC----.........................................................................................................................................................................................................................................................2011.0010100
.......................................................GTGC-GTTATT-------TTAGAAGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------ACTGGCGCCCGAGCAGG.......................1830.3310010
dm3
GA--------------------------------------------------AGTGTGC-GTTATT-------TTAGAAGTTTTAATT---------------T-GGATTC--------G----TTCAAGTCTCAAGTGAGTGT--------CGTGTCGTTAAGTGCTGGGAATC---ATCGCC-----------ACTGACAGT-TTGTTATTTGAGAGCC------------------------------------------CC----ACAAATTGGTTC-------------------------C-----CCACC-----C-----------AAGCCCCAATCTATC----------TCCTCGTT-------A---------AAAAAAG----TGTTT-CGT--GCTTTAATGTTACACATATGT--ACAATATATG--------------------TATGTGGA-----------ACTGGCGCCCGAGCAGGGACCTTCT-ATGCAGATA--TGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................TTAAGTGCTGGGAATC---ATCGCC-----------A..................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000010000000000000000000000
...........................................................................................................................................................GTCGTTAAGTGCTGGGAATC---ATCG................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000
.................................................................................................................................................................AAGTGCTGGGAATC---ATCGC...............................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000
...............................................................................................................................AAGTCTCAAGTGAGTGT--------CGTG..........................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................AGTGCTGGGAATC---ATCGCC-----------ACT................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........................................................C-GTTATT-------TTAGAAGTTTTAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................GTGAGTGT--------CGTGTCGTTAAG..................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGA-----------ACTGGCGCCCGAGCA.........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................AGTGCTGGGAATC---ATCGCC-----------ACTGACA............................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................TCCTCGTT-------A---------AAAAAAG----TGTTT-CGT--GA..............................................................................................................2611.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................TCAAGTGAGTGT--------CGTGTCGTTAAGT.................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
....................................................AGTGTGC-GTTATT-------TTAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................GTGAGTGT--------CGTGTCGTTAAGTGCTGG............................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................GTT-------A---------AAAAAAG----TGTTT-CGT--GC..............................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.....................................................................................................................................CAAGTGAGTGT--------CGTGTCGTTAAGTGC...............................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................TTAAGTGCTGGGAATC---ATCGCC-----------ACTGA..............................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................CTCAAGTGAGTGT--------CGTGTCGTTAAGTGC...............................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............................................................................GAAGTTTTAATT---------------T-GGATTC--------G----..........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGA-----------ACTGGCGCCCGAGCAGGG......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................GTTAAGTGCTGGGAATC---ATCGC...............................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
......................................................TGTGC-GTTATT-------TTAGAAGTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................TGC-GTTATT-------TTAGAAGTTTTAATT---------------T-GGA..........................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................AGCCCCAATCTATC----------TCCTCGT........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATG--------------------TATGTGGA-----------ACTGGCG.................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------------------TATGTGGA-----------ACTGGCGCC...............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..........................................................................................................................................................TGTCGTTAAGTGCTGGGAATC---....................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................G----TTCAAGTCTCAAGTGAG.........................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................................................................TT---------------T-GGATTC--------G----TTCAAGTCTCA...............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGA-----------ACTGGCGCCCGAGCAGGGAC....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TTACACATATGT--ACAATATATG--------------------...........................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................TCTCAAGTGAGTGT--------CGTGTCGTTAAGT.................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................T---------------T-GGATTC--------G----TTCAAGTCTCAAGTGAGTGT--------..............................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................AGTGTGC-GTTATT-------TTAGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................ATT---------------T-GGATTC--------G----TTCAAGTCTCAAGT............................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-----------ACTGGCGCCCGAGCAGGGA.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................TCTCAAGTGAGTGT--------CGTGTCGT......................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................CGTGTCGTTAAGTGCTGGGA..........................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
...........................................................................................................................................................GTCGTTAAGTGCTGGGAAT........................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------ACTGGCGCCCGAGCAGGGA.....................2030.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCGCCCGAGCAGGGAC....................18100.4040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------ACTGGCGCCCGAGCAGGGAC....................2130.3310000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGCGCCCGAGCAGGGA.....................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------ACTGGCGCCCGAGCAGGGACAC..................2340.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................GTGTCGTTAAGTGCTGTT...........................................................................................................................................................................................................................................................................................................................................................1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
droEre2
GA--------------------------------------------------AGTGTGC-GTTATT-------TTAGAAGTTTCAATT---------------T-GGAATC--------G----TACAAGTCTCAAGTGAGTGT--------CGTGTCGTTAAGTGCTGGGAATC---ATCGCC-----------ACTGACAGT-TTGTTATTTGAGAGCC------------------------------------------CC----ACAAAGTGGTTC-------------------------CC----CCACC-----C-----------AAGCCCCAAACTCTCCCCCCCACCCC---CTCCAGCCCACTAAACA--CAAAAAAAG----TGTTT-CGT--GCTTTAATGTTACATATAT-------------G--------------------TATCTGCA-----------ACTGGCGCCCGAGCAGGGACCTTCT-ATGCAGATG--TGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................T-TTGTTATTTGAGAGCC------------------------------------------CC----ACAAAGT..................................................................................................................................................................................................................................................2611.0010000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-----------ACTGGCGCCCGAGCAGGGAC....................2311.0010000010
...............................................................................GTTTCAATT---------------T-GGAATC--------G----TACAAGT...................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
droYak3
GA--------------------------------------------------AGTGTGC-GTTATT-------TTAGAAGTTTTAATT---------------T-GGAATC--------G----TACAAGTCTCAAGTGAGTGT--------CGTGTTGTTAAGTGCTGGGAATC---ATCGCC-----------CCTGACAGT-TTGTTATTTGAGAGCC------------------------------------------CC----ACAAAGTGGTTTTC-----------------------CC----CCACC-----C-----------AAGCCCCAAAC--------------TCCTCCCC-------A--------AAAAAAAT----TGTTT-CGT--GCTTTAATTTTACATATACGT--TTA-TGAATG--------------------TATGTGCA-----------ACTGGCGCCCGAGCAGGGACCTTCT-ATGCAGATA--TGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
GA--------------------------------------------------AGTGTGC-GTTATT-------TTAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00202000000000
...............................................................................................................................................................................................................GTTATTTGAGAGCC------------------------------------------CC----ACAAAGTGGTT..............................................................................................................................................................................................................................................2711.00100000010000
.....................................................................................ATT---------------T-GGAATC--------G----TACAAGTCT.................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
droEug1
GA--------------------------------------------------AGTGTGC-GTTATT-------TCAGAAGTTTCAAAA---------AAAAATT-GGAATTAC------A----AAAAAGTCTCAAGTGAGTGT--------CGTGTTGTTAAGTGCTGGGAATCATCATCACC-----------ACTGACAGT-TTGTTATTTGAGAGTC-----------------------------------------TCC----ACAAAGGTGCTC-------------------------C-----CT--TCAGCCCGTTCCATTT--GACTCCCAAA-TATC----------TCCCCCCC-------AA-------AATAAAAG----TGTTT-CGT--TCT-GGTTATTACATATA--------------------------------------------------------TGGCGCTTGAGCTGGGACCCTCT-ATGCAGATATTTGTSizeHit CountTotal NormTotal
No Reads
droBia1
GACC----------------------------------------------GAAGTGTGC-GTTATT-------TCAGAAGTTTCAATT---------------T-GGAATG--------G----TACAAGTCTCAAGTGAGTGT--------CGTGTCGCTAAGTGCTGGGAATCATCATCGTC-----------ACTGACAGT-TTGTTATTTGAGAGCC------------------------------------------CC----ACAAAGTGGTTG-------------------------G-----CC-CC-----C-----------AACCCCC--------------------------------------------AAAAAG----TGTTT---------------TTACATATAC------------------------------------------------------ATGGCGCCCGAACAG-----------------------TSizeHit CountTotal NormTotal
No Reads
droTak1
GA--------------------------------------------------AGTGTGC-GTTGTT-------TCAGAAGTTTCAATT---------------T-GGAATT--------G----TACAAGTCTCAAGTGAGTGT--------CGTGTCGTTAAGTGCTGGGAATCATCATCGCC-----------ACTGACAGT-TTGTTATTTGAGAGCC------------------------------------------CC----ACAAAGTGGTTC-------------------------C-----CC--C-----C-----------GATCCCAAAA--ACC----------C---CCCCA-------G--CT-C--CAGAAAG----TGTTT---T--TCCCTAA------GTATA------------------------------------------------------CATGGCGCCCGAGCAGGGAC-TTCT-ATGCATATT--CGTSizeHit CountTotal NormTotal
No Reads
droEle1
GA--------------------------------------------------AGTGTGT-GTTATT-------TCAGAAGTTTCAATTTGG---------------TGGGC-AACTGCCG----TTCAAGTCTCAAGTGAGTGT--------CGTGTCGTTAAGTGCTGGGAATC---ATCGCC-----------ACTGACAGT-TCGCTATTTGAGAGCC------------------------------------------CC----ACAAAGTGGTTGCA-C---------------------C-----C--CC-----T-----------AATACCCA-------------------CACCACA-------A--TT-CCAAAAAAAG----TGTTT-CGT--GCCTTGATATAACATGTAT------------------------------------------------------GTGGTGCCCACG-AGGGGCA-TTT-ATGCAGATA--TGTSizeHit CountTotal NormTotal
No Reads
droRho1
GA--------------------------------------------------AGTGTGT-GTTATT-------TCAGAAGTTACAATTTGG------------T-GGAACC--------G----TTCAAGTTTCAAGTGAGTGT--------CGTGTCGTTAAGTGCTGGGAATC---ATCGCC-----------ACTGACAGT-TGGTTATTTGAGAGCC------------------------------------------CC----ACAAAGTGGTTC-------------------------C-----CC--C-----C-----------GGTTCT------A----GGTC----CACCCCCCA-------A-------ATAAATAG----TCTTT-CGT--GCCTAGATGTAACATATAT------------------------------------------------------GTGGCGCCCGACGAGGGGCA-TTT-ATGCAGATA--T--SizeHit CountTotal NormTotal
No Reads
droFic1
GA--------------------------------------------------AGTGTGC-GTTATT-------TCAGAAGTTTCAGTTTGA---AAT-----TT-GGAAGT--------G----TTCAAGTCTCAAGTGAGTGT--------CGTGTCGTTAAGTGCTGGGAATC---ATCGCC-----------ACTGACAGT-TTGTTATTTGAGAGTC------------------------------------------CC----ACAAAGTGCTCC-------------------------A-----TCCCC-----C-----------GCCACCCAATCCGCC----------CCCCTAAC-------AAAAAA--AAAGAAAAG----TGTTT-CGT--GCCTGGATGTTACATATAC--AT-------------------------------------A-----------AGTGGCGCCCAGCCAGGGACACCCGAATGCAGAT----GTSizeHit CountTotal NormTotal
No Reads
droKik1
GA--------------------------------------------------AGTGTGT-GTTTTT---TATGTCAGAACTTTCAATT---------------TTGGAACC-CACAACCGTTCGT-------TCAAGTGAGTGT--------CG--TCGTTAAGTGCTGGGCCCC---ATCAACATCAACAACTAACTGACAGTTTTGTTATTTGAGAACC------------------------------------------CC----GCAAAGCGGTTGA-GGCTGTG--------------------------------------------------------------------------AAC-------AAAATAAAGAAAAAAAGCCGCTGTTCCCGTGAGCTTTGATGTG-------TGT----------TC--------------------TCTG---------------TGTGGCGCCCTAG---------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TA--------------------------------------------------ATTAAGT-GTCATTTTTT---GAGGAACTTTCAGCT---------------TTGGAAGC--------G----------TCTCAAGTGAGTGT--------CGTGCCGTTAAGTGCTTGGAATC-TCATTGCC-----------ACTGACAGT-TTGTTATTTGAGAGCT------------------------------------------CC----ACAAAGTGGTGG-----------GTTGGGGTCG--------------------------------------------A----GGTC----T--------------------------------------------------------TCCCTCTAT--AT-------------------------------------AGACCTTCCCCCTGTGGCGCCCCAGCT------CTCT-AT------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................GTGGTGG-----------GTTGGGGTCG--------------------------------------------A----GG.....................................................................................................................................................................2014.004000004
.................................................................................TTCAGCT---------------TTGGAAGC--------G----------TCTCAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..........................................................................................................................................................................................................................GCT------------------------------------------CC----ACAAAGTGGTGG-----------GTTGGG............................................................................................................................................................................................................................2311.001010000
.......................................................AAGT-GTCATTTTTT---GAGGAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.......................................................................................................................G----------TCTCAAGTGAGTGT--------CGTGCC........................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.................................................................................................................................................................................................................................................................................AGTGGTGG-----------GTTGGGGTCG--------------------------------------------A----GGTC----...............................................................................................................................................................2311.001000001
......................................................................................CT---------------TTGGAAGC--------G----------TCTCAAAA............................................................................................................................................................................................................................................................................................................................................................................................1960.171100000
droBip1
GAAA------------------------------------------TAATAAAG--TGT-ATTTTT---T---GAAGAACTTTCAATT---------------TAGGAAGC--------G----TCCAATTCTCAAGTGAGTGT--------CGTGTCGTTAAGTGCTGGGAATC---ATATCC-----------ACTGACAGT-TTGTTATTTGAGAGCT------------------------------------------CCACACACAAAGTGGTTTG-GGGTTTGGGGTTGGGGACGGGGCCTCGGCCT--TC-G--CCTTCCCCTTGCCTGCCCC------TC----------C---CCCCA---------------------GC----TGTTT-CGT--GCTTTGAGGTA-C---TGT--TT-------------------------------------------------GGTGGCGCCCGAGCTCTT---------------------GSizeHit CountTotal NormTotal
No Reads
dp5
GTTGCCTCCCGCTTCTTCCCGCCCGCTCGCCCGCTCGGCCGCTCGCT-----AATGTACGAGTATT-------TTTGAAGTTTCCATTCGGCGGAATATCCAT-CGGAATT--------G----T-------TGAAGTGAGTGTCGCTTTATCGTGTCATTGAGTGCTGGGAATC---ATTGCC-----------GCTGACAAT-TTGTTATGTGAGATGAGGGGGGAGGCCTCCCCCGACCACCCCCGGCCCCCCCCTGACCGCACTCGTAGAGTGGTTG------------------------------------------------------------------------------------------------------------------------AGG--GCCTGCACTCGAAATTTGT--GT-------------------------------------------------GGTGGCGCCCCAAAACAGA---------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................GTATT-------TTTGAAGTTTCCATTCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020110000000
...............................................................................GTTTCCATTCGGCGGAATATCCAT-C.............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
........................GCTCGCCCGCTCGGCCGCTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...............................................................................................................................................................TTGAGTGCTGGGAATC---ATT.................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
........................GCTCGCCCGCTCGGCCGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
droPer2
GTTGCCTCCCGCTTCTTCCCGCCCGCTCGCCCGCTCGGCCGCTCGCT-----AATGTACGAGTATT-------TTTGAAGTTTCCATTCGGCGGAATATCCAT-CGGAATT--------G----T-------TGAAGTGAGTGTCGCTTTATCGTGTCATTGAGTGCTGGGAATC---ATTGCC-----------GCTGACAAT-TTGTTATGTGAGAAGAGGGGGGAGGCCTCCCCCGACCATCCCCGGCCCCCCCCTGACCGCACTCGTAGAGTGGTTG------------------------------------------------------------------------------------------------------------------------AGG--GCCTGCACTCGAAATTTGT--GT-------------------------------------------------GGTGGCGCCCCAAAACAGA---------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................GTATT-------TTTGAAGTTTCCATTCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002200000
.........................................................................TTTGAAGTTTCCATTCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
...............................................................................................ATATCCAT-CGGAATT--------G----T-------TGAAGAT...........................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
............................................................................................GGAATATCCAT-CGGAATT--------G----T-------TGAA..............................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
droGri2
TA--------------------------------------------------TATATAT-GT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA-TATATA--------------------TATATGCA---------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 06:42 PM