ID:

dsi_24811

 Coordinate:

2r:17610792-17611048 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-71.5 -71.4 -71.4

Flybase annnotation

five_prime_UTR [2r_17611079_17611276_-]; CDS [2r_17611049_17611078_-]; exon [2r_17611049_17611276_-]; exon [2r_17610204_17610791_-]; CDS [2r_17610204_17610791_-]; intron [2r_17610792_17611048_-]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGTGAACCAAGCAATTGAACATGGAAACCGTTGTTGCCTTCAACAATGAGGTAAGCTATAGATGCATTTGAAACGGGGTTCGTTATGGAGCAGCCGGCGTGGTTGCACAATGTCCGCTTGAAGTCGGGATTGGGATTGCCCAATGTGCAGGAGTTATACAGATCCTCCTGGAGGCGCAGGCAGAGCACCGAATTTTCACCGAACAGCGCCGCCCAGGGTTGCTTTTTGGCCAGCACCCGATAACGATAACTCCATGTCCCAGATATCCGTAAATTATAGCCGCACTTTAACATCTATGTTTCCTTAGCTCTCCGGACTCTATGACAGCCGACCGCCCATTTCCAAGGCGAAGATGGC
**************************************************..((((.(((((((...(((((.(((......(((((((((((((.....))))))......((((((...)).))))((((((....))))))..(((((((((((....(((...((((.((.((.......)).)).........(((((.((((((......)).)))).))))))))).....)))....)))))))).)))........))))))).......)))...))))))))))))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M025
embryo
 M023
head
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 M053
female body
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
.........AGCAGTTGAACATGG............................................................................................................................................................................................................................................................................................................................................. 15 1 20 1.05 21 0 0 0 0 15 5 0 0 0 1 0
.....................................................................................................................................................................................................................................................................................................................CTCCGGACTCTATGACAGC............................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................GCAGGCAGAGCACCGAATTTTT................................................................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................TGAGGTAAGCTATAGATG..................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................CATTTGAAACGGGGTTCGTTAT............................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........AAGCAATTGAACATGGAAACC........................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GACAGGACCCAATAACGATAAC........................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................................................................................................CCTTAGCACTCAGGACTC...................................... 18 2 9 0.44 4 0 4 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................CTTACCAAGGCGAAGATG.. 18 2 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................CTCGTGGAGGCGTCGGCAGAG............................................................................................................................................................................ 21 3 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................TCCTTAGCACTCAGGACTC...................................... 19 2 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................GCAGACAGAGCACCG....................................................................................................................................................................... 15 1 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................GAACGATGACTCCATGACC.................................................................................................. 19 3 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................ACCTTAGCACTCTGGACTC...................................... 19 3 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AGGTAGAGCACTGAATTTCC................................................................................................................................................................ 20 3 11 0.09 1 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................CAGATCCTGCTGGTGGCGCC................................................................................................................................................................................... 20 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................TTACCAAGGCGAAGA.... 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................TTCCAAGGCTAAGCTGGG 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
.....................................................................GGTACGGGGTTCGTTA................................................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

TCACTTGGTTCGTTAACTTGTACCTTTGGCAACAACGGAAGTTGTTACTCCATTCGATATCTACGTAAACTTTGCCCCAAGCAATACCTCGTCGGCCGCACCAACGTGTTACAGGCGAACTTCAGCCCTAACCCTAACGGGTTACACGTCCTCAATATGTCTAGGAGGACCTCCGCGTCCGTCTCGTGGCTTAAAAGTGGCTTGTCGCGGCGGGTCCCAACGAAAAACCGGTCGTGGGCTATTGCTATTGAGGTACAGGGTCTATAGGCATTTAATATCGGCGTGAAATTGTAGATACAAAGGAATCGAGAGGCCTGAGATACTGTCGGCTGGCGGGTAAAGGTTCCGCTTCTACCG
**************************************************..((((.(((((((...(((((.(((......(((((((((((((.....))))))......((((((...)).))))((((((....))))))..(((((((((((....(((...((((.((.((.......)).)).........(((((.((((((......)).)))).))))))))).....)))....)))))))).)))........))))))).......)))...))))))))))))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M023
head
 O001
Testis
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
.......................CTTTGGCAACAACGGAAGTTGT........................................................................................................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0
............................................................................................CGGCCGCACCGACGTGTTAC..................................................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0
...............................................................................................................CAGGCGAACTTCAGCCCTAAGG................................................................................................................................................................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GCCGGTCGTGGCCTATTGCTA.............................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................TTTGCCCCAAGCAATACCTCGTCGGC..................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................TTAAAAGTGGCTTGTCGC..................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................................................................................................................AGAGGCCTTAGATAGTG................................ 17 2 2 0.50 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................GCTAGTGAGGAACAAGGTCT.............................................................................................. 20 3 4 0.25 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................TATTGTCATACAGGGTCTAT............................................................................................ 20 3 5 0.20 1 0 0 0 0 0 0 0 1 0
..........................................................................................................................................GGGTTACACGTTCTC............................................................................................................................................................................................................ 15 1 5 0.20 1 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................................................................................................AGATACTGTCAGCAGGC....................... 17 2 7 0.14 1 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................................................CTAGTGAGGAACAAGGTCT.............................................................................................. 19 3 11 0.09 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................CAGGGTCACTAGGCATTTT................................................................................... 19 3 11 0.09 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................CCAAGGAAGGGAGAGGCCT......................................... 19 3 13 0.08 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................GCGTGCGTCTCTTGGCT...................................................................................................................................................................... 17 2 19 0.05 1 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................CCTCAATATGTTTAGGTGC............................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................................................AAAAACTGCTCGTGGGC...................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:17610742-17611098 - dsi_24811 A--GTGAACC---------AAGCAATTGAACATGGAAACCGTTGTTGCCTTCAACAATGAGGTAAGCTATAGATGCA-TTTGAAACGGGGTTCGTTATGGAGCAGC-------------------------------------------------------------------------------------------------------CGGC--GTGGTTGCACAATGTCCGCTTGAAGTC-------GGGATTGGG------A---------------------TTG--CCCAATGTGC-----------A--GGAGTT--ATACAGATCCTCCTG----GAGGCGCAGGCAGAGCACCGA-ATTTTCA----------CCGAACAGCG-CCGCCCAGGGTTGCTTTTTGGC-------CAG-------------------CACC------CGATA-ACGATAACTC-C-----------A--TGTCC--CAG-ATATCC----------------------GT--AAAT--TATAGC-------------------------CGCA----------CT--TTAACA----------TCTATG--TT--TCCTTAGCTCTCCGGACTCTATGACAGCCGACCGCCCATTTCCAAGGCGAAGATGGC
droSec2 scaffold_9:382008-382364 - A--GTGAACC---------AAGCAATTGAACATGGAAACCGTTGTTGCCTTCAACAATGAGGTAAGCTATAGATGCA-TTTGAAACGGGGTTCGTTATGGAGCAGC-------------------------------------------------------------------------------------------------------CGGC--GTGGTTGCACAATGTCCGCTTGAAGTC-------GGGATTCGA------A---------------------TTG--CCCAATGTGC-----------A--GGAGTT--ATAGAGATCCTCCTC----GAGGCGCAGGCAGAGCACCGA-ATTTTCA----------CCGAACAGCG-CCGCCCAGGGTTGCTTTTTGGC-------CAG-------------------CACC------CGATA-ACGATAACTC-C-----------A--TGTCC--CAG-ATATCC----------------------GT--AAAT--TATATC-------------------------CGTA----------CT--TTAACA----------TCTATG--TT--TCCTTAGCTCTCCGGACTCTATGACAGCCGACCGCCCATTTCCAAGGCGAAGATGGC
dm3 chr2R:17055639-17055986 - A--GTGAACC---------AAGCAATTGAACATGGAAACCGTGGTTGCCTTCAACAATGAGGTAAGCTATAGATGCA-TTAGAAACGAGGTTCGTTATGGAGCAGC-------------------------------------------------------------------------------------------------------CGGC--GTGGTTGCACAATGTCCGCTTGAAGTC-------GGTATTCGG------A---------------------TTG--TCCAATGTGC-----------G--GGAGGT--ATACAGATCCTGCTG----GAGGCGCAGGCAGAGCACCG----------------------AACAGCA-CCGCTCAGGGTTGCTTTTTGGC-------CAG-------------------CACC------CGATA-ACGATAACTC-C-----------A--TGTCC--CAG-ATATCC----------------------GT--AAAC--TATAGC-------------------------CGTA----------CT--GTAACA----------TCTATA--TTTCTCCTTAGCTCTCCGGACTCTATGACAGCCGACCGCCCATTTCCAAAGCGAAGATGGC
droEre2 scaffold_4845:11198010-11198368 - A--GTGAACC---------AAACAATTGAACATGGAAACCGTGGTTGCCTTCAACAATGAGGTAAGCTATAGATTCT-TTTGCAACGAGGTGCGTTGTGGAGCAGC-------------------------------------------------------------------------------------------------------CGGC--GTGGTTACACAATGTCCGGTTGAAGTC-------GGGATTCGG------A---------------------TTG--TCCTATGTGC-----------A--GAAGGT--ATACAGATCCGCCTGGTTGGTGGCGCAGGCAGAGCACCGA-ATTTTCA----------CCGACCAGCG-CCGCCCAGGGTTGCGTTGTGGC-------CAG-------------------CAAC------CGATA-ACGATAACTC-C-----------T--CGTCC--GAG-ATATCC----------------------GT--AAAC--TATAGC-------------------------CGTA----------C-------TAA----ATC-AT-C-T----TTTCTCTTAGCTCTCCGGACTCTATGACAGCCGACCGCCCATTTCCAAGGCGAAGATGGC
droYak3 2R:12140588-12140941 + A--GTGAACC---------AAACAATTGAACATGGAAACCGTGGTTGCCTTCAACAATGAGGTAAGCTATAGATTCT-TTTGCAACGAGGTGCGTTATGGAGCAGC-------------------------------------------------------------------------------------------------------CGGC--GTGGTTACACAATGTCCGGCTGAAGTC-------GGGATTAGG------A---------------------TTG--TCCAATGTGC-----------A-------T--ATACAGATCCTCCTT----GAGGCGCAGGCAGAGCACCAA-ATTTTCA----------CCGACCAGCG-CCGCACAGGGTTGCGTTCTGGC-------CAG-------------------CAAC------CGATA-ACGATAACTC-C-----------T--TGTCC--CAG-ATATCC----------------------GT--AAAC--TATATC-------------------------TGTA------TAAAC-------TAA----ATC-AT-C-C----TTTCTCGTAGCTCTCCGGACTCTATGACAGCCGACCGCCCATTTCCAAGGCGAAGATGGC
droEug1 scf7180000409474:890418-890786 + A--GTGAACC---------GAACAATTGAACATGGAAACAGTGGTTGCCTTCAACAATGAGGTAAGTTATAGAGCCTTTTTGCAATGAGGTGAGTTATAGA---GC-------------------------------------------------------------------------------------------------------CGGC--GTGGTTACACAATGTCCGGTTGAAGTC-AAGTC-GGGATTAGG------AAC------TCC----------TTG--CTCAA----------------A--AAAGGT--ATAGAGATCTTCT-C----AAGGCGCAGGCAGAGCCCCGA-ATTTTCA----------CCGACAAACG-CCGATCAGGGTTGCTTTATCGC-------GAG-------------------CACC------CGATA-ACGATAACGC-AACAAAAACTCCG--TGTCC--CAT-AAATC---------CCGATTCCCGCGGCGT--AAAT-------------------------------------------------------TAA----TTC-CT-------CTGCCTTTCAGCTCTCCGGACTCTATGACAGCCGGCCGCCCATTTCCAAGGCCAAGATGGC
droBia1 scf7180000301754:430976-431341 + A--GTGAACC---------GAACAATCGAACATGGAAACAGTGGTTGCCTTCAACAATGAGGTAAGCTATAGAGCGT-TTTGCAATGAGGTGAGTTATACA---GC-------------------------------------------------------------------------------------------------------CGGC--GTGGTTATACAATGCCTGCTCCAAGTC-------AGGATTGGGCCTAGGAC-------------------------TCCAGTGTGC-----------ACGGGCAGG--CTGGAGATCCTCCC-----GTGGCGCAGGAAGAGCCCCGA-AATTTC---------------CAGGGT-CCGTCCAGGGTTGCTCTCTTGC-------GAG-------------------CACC------CGATA-ACGATAACCC-C-----------AGATGCGC--CAGCAAACCC----------------------GTGGAAAC--TTCATA-------------------------TGTG------TA--CCCCGTAGTAA----CTA-CT-T-C----CGTCTTGCAGCTCTCCGGACTCTATGACAGCCGGCCGCCCATTTCCAAGGCCAAGATGGC
droTak1 scf7180000415609:2594-2944 + A--GTGAACC---------GAACAATCGAACATGGAAACAGTGGTTGCCTTCAACAATGAGGTAAGCTATAGGGCAT-TTTGCAATGAGGTGAGTTATAGA---GC-------------------------------------------------------------------------------------------------------CGGC--GTGGTTATACAAC--CCGCT--AATCCCGGATC-GGGATTAGGTCGAGGAC-------TCC----------CTGGGCCCGA----------------G--AGAAGC--CCAGAGATCTGTG-C----GAGGCGCAGGAAGAGCCCCGAAATTTTCA----------C-----------CGACCAGGGTTGCTTTCTCGC-------GAG-------------------CACC------CGATA-ACGATAACCC-C-----------G--TGTCC-GCAG-AAATCA----------------------GCAGAAAC--TATA-----------------------------------------C-------TAA----TTCCATGC-C---TGTCTTTTTAGCTCTCCGGACTCTATGACAGCCGGCCGCCCATTTCCAAGGCCAAGATGGC
droEle1 scf7180000491232:333475-333828 + A--GTGAACC---------AAACAATTGAACATGGAAACAGTGGTTGCCTTCAACAATGAGGTAAGCTATAGAGCCT-TTTGCAATGAGGTGAGTTATAAG---GC-------------------------------------------------------------------------------------------------------CGGC--GTGGTTACACAATGTCCGGTTAAAGTC-------GGG-----G------AGC-------CCTT---ACATCTT--------------GTATATGTGTACAAAAA--GAGAGTAGATCTTCCT-----GTGGCTCAGGTAGAGTCCCCA-ATTTTCC----------CCGACCAGCG-CCGCTCAGGGTTGCTTT-------------------------------------C------CGATA-ACGATAACCC-CACGGAGGCCCCG--CGGCC--CGG-AAATC---------CCCGTACC-----------------------------------------------TGT---------AAC-------TAA----CTC-CT-C-C----TGTCTTCCAGCTCTCCGGACTCTATGACAGCCGGCCGCCCATTTCCAAGGCTAAGATGGC
droRho1 scf7180000780219:18330-18671 - A--GTGAACG---------AAACAATTGATCATGGAAACAGTGGTTGCCTTCAACAATGAGGTAAGCTATAGAGCCT-TTTGCAACGAGGTGAGTTATAAA---GC-------------------------------------------------------------------------------------------------------CGGC--GTGGTTACACAATGTCCGGTTAAATTC-------GGG-----G------AGT-------T-----------------CCTATAT---------GTGTATAAAAA-----GAATGATCTTCCT-----GTAGCGCAGGCAGAGTCCCTA-ATTTTCC----------CCGACCAGCG-CCGCTCAGGGTTGCTT-------------------------------------CC------CGATA-ACGATAACCC-CGCGGGGGCTTCA--CGACC--CAG-AAATC---------CCCGTACC-----------------------------------------------CGT---------AAC-------TAA----CTC-CT-C-C----TGTCTTCCAGCTCTCCGGACTCTATGACAGTCGGCCGCCCATTTCCAAGGCCAAGATGGC
droFic1 scf7180000453811:226458-226807 + A--GTGAACC---------GAACAATTGAACATGGAAACAGTGGTTGCCTTCAACAATGAGGTAAGTTATAGAGCCT-TTTGCAACGAGGTGAGTTGTAGA---GC-------------------------------------------------------------------------------------------------------CGGC--GTGGTTACACAATGTTCGTTTGGAGT------------TTCAA------A-------GTCCTT----------------GGTGTGA-----------A--GA------ATAAGGATCA----A----AAGGCACAGGCAGATCACCGAAATTTTCC--T-------CCGAGAAGCACCCGTCCAGGGTTGCTTCATG-C-------GAG-------------------CCTC------CGATAAACGATAACCC-T--------------GGCCC--CAG-A-ACCCGAGAAATCCCCTTACC-----------------------------------------------CGTT--------AAT-------TAA----CTC-CT-T-CGGGCTTTTTTCCAGCTCTCCGGGCTCTATGACACCCGGCCGCCCATTTCCAAGGCCAAGATGGC
droKik1 scf7180000302476:2185269-2185661 - A--GTGAAAC---------GAACAAATGAACATGGAAACCGTCGTGGCTTTCAACAATGAGGTAAGATGGATAAACG-CTGGGAAC-----------------AG-CGCCGG--ATGGATTGTCGG--------------ATTGCCTGCAA-----------------------AAG---GGCTGCGAAGGGTGCAGCCTCGCCG-----GAG--GTGGTTACACAATATCCGGCCAG-------------CACTAGG---------CTG-GGTAATGGTCGCC----------------GC-----------------GG--ATGGAGATCTCTC------------CAGGCAGGGCCCAGA-ATTTTT-----------CCGACAAGCG-CCGCCCAGGGTTGCTTCGCG-CGGTGGCGCAG-------------------CACC------CGATA-ACGATAATCG-C-----------C--AGTCC--CGG-GTCCCC-----------TTACCCGTG-------CCAAA--TGCT-------------------------CATG----------C-------CAA----TGCCATTCG-C--TTCCGTTGCAGCTCTCTGGACTCTATGATAGCCGGCCGCCCATTTCTAAGGCTAAGATGGC
droAna3 scaffold_13266:6908961-6909337 + A--GTGAAAC---------AAATATCTGAAGATGGAAACCGTCGTGGCTTTCAACAATGAGGTAAGTGATTGG-----CG-------------------G--AGGCCGCCGGACT------CTCCGAGTTCTAGGTGTGCATATCGTGCGAAAAAGTGTTTGGCCGGTGCCT----------------AGGGTGGACCCT----GGAG-----GTGTGGCTAA---------------GCGGCTGT--G------------------TCGCCCCAGTTGCT------------------------------------------ATAAAGAGATGTCT-----GCGGCGA---AAAATATCCAA-ATTTCAC----------ATGCCTGGGG-CCGACCAGGGTTGCTCCCG--C-----------------------------------------AGC-AGCGCAGCCC-CGCG----CATCC--C-------CA-C-T-----CCCATGCCAG------TG-------CCCGA--TGCT-------------------------AATA------TA--AT--GTTACA-----TG----CTATT--TTCCTTTGCAGCTCTCCGGACTCTATGACAGCCGACCGCCCATATCCAAGGCCAAGATGGC
droBip1 scf7180000396423:447262-447644 + A--GTGAATC---------AAAAATCTGAAGATGGAAACCGTCGTGGCTTTCAACAATGAGGTAAGTGATTGG-----CG-------------------G--AGGCCGCCGGACT------CTCCGAGTTCTAGGTGTGCATGTCGTGCGAAAAAGTGTTTGACCGGTGCCC----------------AGGGAGGAGCCT----GGAG-----GTGTGGTTAA---------------GCCGTTGT--G------------------TCTCCTCAATTGCTATG----------------ATGA--------------------GA--AGTCTTTG------------ACGGCAAATACCTTA-ATTTCAC----------TTGCCTGGGG-CCTTCCAGGGTTGCTCCGG--C-----------------------------------------AGT-AGCGCAGCCC-CGCG----CATCC--C-------CA-C-T-----CCAATGCTCG------TG-------CCTAA--GGCT-------------------------CGTGCTCATGAA--AT--GATA-AA----TG----CTATT--TTCCTTTGCAGCTCTCCGGGCTCTATGACAGCCGGCCGCCTATATCTAAGGCCAAGATGGC
dp5 3:17692693-17693098 - C--GTGAAAC---------CAACAATTGAACATGGAAACTGTTGTGGCTTTCAACAATGAGGTAAGTCCAAGG-----CA-------------------GGGCAGCCGCCGC--TTG------CTG--------------ATTGCGTGAGA-----------------------AAAACTCGCTGCAGAGTACGCAAATTGTTTG-AAGCGTG--GTGGTTATACAACGCCA------ACCACTGA--T------------------CCGATGCAATTGTTACA----------------GTGAATATGTGCATACACA--AAAAATAGTTATTTC------------TAGGCAATGCCCCAA-ATTTGTTCGTACAAGCGCAGCACAGCG-CCGCCCAGGGTTGCATGTTGCC-------TTGCCCGTGATGCTCAACCGTGTACTCGATTGCGATA-ACCACAACCC-C-----------A--TGCCC--------------------------------------------------------------------------------------------AC---TTGTTCTTCCCAT-T-CT--GTCCTTTGCAGCTCTCCGGACTCTATGACAGCCGACCGCCCATATCCAAGGCCAAAATGGC
droPer2 scaffold_31:96965-97370 + C--GTGAAAC---------CAACAATTGAACATGGAAACTGTTGTGGCTTTCAACAATGAGGTAAGTCCGAGG-----CA-------------------GGGCAGCCGCCGC--TTG------CTG--------------ATTGCGTGAGA-----------------------AAAACTCGCTGCAAAGTACGCAAATTGTTTG-AAGCGTG--GTGGTTATACAACGCCA------ACCACTGA--T------------------CCGATGCAATTGTTACA----------------GTGAATATGTGCATACACA--AAAAATAGTTATTTC------------TAGGCAATGCCCCAA-ATTTGTTCGTACAAGCGCAGCACAGCG-CCGCCCAGGGTTGCATGTTGCC-------TTGCCCGTGATACTCAACCGTGTACTCGATTGCGATA-ACCACAACCC-C-----------A--TGCCC--------------------------------------------------------------------------------------------AC---TTGTTCTTCCCAT-T-CT--GTCCTTTGCAGCTCTCCGGACTCTATGACAGCCGACCGCCCATATCCAAGGCCAAAATGGC
droWil2 scf2_1100000004512:1856022-1856461 - ATAGTGAACCTGAACCCACGAAAACAGCAACATGGAAACTGTTGTGGCTTTCAACAATGAGGTAAGTCG--GG-----CA-------------------GGACAT-GACCAAA-ATGT----------------------ATA----GCGAGAAGGTATGCGA-GGGTACTGAAAAA---GGCAACAAAGTAACCAATTTTG-TG--AGCAAAGTGCAATTATTCAATCACCA------TAACT---------------------------AGCTATTAGTA-------------AAGTGG-----------A--GAAAATAAAAATATATTTTTC------G------GGTAATAGCCCCGA--TT-T-C----------GCGACAAGCG-CCGCTCAGAGTTGCAATTTGCA-------TTTTTCT---------------TTTTCGATAACGATA-ACAATAACCTCC-----------A--CCTTCGATGGC-AACCA----------------------ATATAAAC--TTGGCAATTGGCTGGCCTGACCTGACCTGATCGTG----------CTCTC---TTTTTCT-----T-T-CTTTCTTGATTACAGCTTTCCGGGCTCTATGACAGCCGTCCACCCATATCCAAGGCCAAAATGGC
droVir3 scaffold_12875:10903605-10903686 + C--ATC-------------------------------------------------------------------------TTGACATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA----------CATGTA-T--TTATTTTTCAGCTCTCCGGGCTCTATGATAGCCGGCCGCCCATATCAAAGGCTAAAATGGC
droMoj3 scaffold_6496:16033997-16034061 - T--ATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTTTCAGCTCTCCGGGCTCTATGATAGCCGACCGCCCATATCGAAGGCTAAAATGGC
droGri2 scaffold_15245:4007182-4007242 + T--GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCACAGCTCTCCGGACTCTATGATAGCCGGCCGCCCATATCGAAGGCTAAAATGGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
A--GTGAACC---------AAGCAATTGAACATGGAAACCGTTGTTGCCTTCAACAATGAGGTAAGCTATAGATGCA-TTTGAAACGGGGTTCGTTATGGAGCAGC-------------------------------------------------------------------------------------------------------CGGC--GTGGTTGCACAATGTCCGCTTGAAGTC-------GGGATTGGG------A---------------------TTG--CCCAATGTGC-----------A--GGAGTT--ATACAGATCCTCCTG----GAGGCGCAGGCAGAGCACCGA-ATTTTCA----------CCGAACAGCG-CCGCCCAGGGTTGCTTTTTGGC-------CAG-------------------CACC------CGATA-ACGATAACTC-C-----------A--TGTCC--CAG-ATATCC----------------------GT--AAAT--TATAGC-------------------------CGCA----------CT--TTAACA----------TCTATG--TT--TCCTTAGCTCTCCGGACTCTATGACAGCCGACCGCCCATTTCCAAGGCGAAGATGGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGGACTCTATGACAGC.............................1911.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................GCAGGCAGAGCACCGA-ATTTTT..........................................................................................................................................................................................................................................................................................................2211.00100000000000001000
.........................................................TGAGGTAAGCTATAGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
...........................................................................CA-TTTGAAACGGGGTTCGTTAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001000000000000
...................AAGCAATTGAACATGGAAACC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
droSec2
A--GTGAACC---------AAGCAATTGAACATGGAAACCGTTGTTGCCTTCAACAATGAGGTAAGCTATAGATGCA-TTTGAAACGGGGTTCGTTATGGAGCAGC-------------------------------------------------------------------------------------------------------CGGC--GTGGTTGCACAATGTCCGCTTGAAGTC-------GGGATTCGA------A---------------------TTG--CCCAATGTGC-----------A--GGAGTT--ATAGAGATCCTCCTC----GAGGCGCAGGCAGAGCACCGA-ATTTTCA----------CCGAACAGCG-CCGCCCAGGGTTGCTTTTTGGC-------CAG-------------------CACC------CGATA-ACGATAACTC-C-----------A--TGTCC--CAG-ATATCC----------------------GT--AAAT--TATATC-------------------------CGTA----------CT--TTAACA----------TCTATG--TT--TCCTTAGCTCTCCGGACTCTATGACAGCCGACCGCCCATTTCCAAGGCGAAGATGGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................ATTGAACATGGAAACCGTTGTTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
......................................................................................................................................................................................................................................................................................................................................................................ACCGA-ATTTTCA----------CCGAACAGCG-CCG.................................................................................................................................................................................................................................................................................2511.0011000
.......................AATTGAACATGGAAACCGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
dm3
A--GTGAACC---------AAGCAATTGAACATGGAAACCGTGGTTGCCTTCAACAATGAGGTAAGCTATAGATGCA-TTAGAAACGAGGTTCGTTATGGAGCAGC-------------------------------------------------------------------------------------------------------CGGC--GTGGTTGCACAATGTCCGCTTGAAGTC-------GGTATTCGG------A---------------------TTG--TCCAATGTGC-----------G--GGAGGT--ATACAGATCCTGCTG----GAGGCGCAGGCAGAGCACCG----------------------AACAGCA-CCGCTCAGGGTTGCTTTTTGGC-------CAG-------------------CACC------CGATA-ACGATAACTC-C-----------A--TGTCC--CAG-ATATCC----------------------GT--AAAC--TATAGC-------------------------CGTA----------CT--GTAACA----------TCTATA--TTTCTCCTTAGCTCTCCGGACTCTATGACAGCCGACCGCCCATTTCCAAAGCGAAGATGGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGGACTCTATGACAGC.............................19111.001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................ATGGAAACCGTGGTTGCCTTCAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2417.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ATTGAACATGGAAACCGTGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000
...................................................................................AACGAGGTTCGTTATGGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGACCGCCCATTTCCAAAGCGAAGATG..2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCGGACTCTATGACAGCCGACCGCCC....................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................GCCTTCAACAATGAGGTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................ATGGAGCAGC-------------------------------------------------------------------------------------------------------CGGC--GTGGTTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............................ACATGGAAACCGTGGTTGCCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................ACAGATCCTGCTG----GAGGCGC...............................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
...............................ATGGAAACCGTGGTTGCCTTCAACAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCCAAAGCGAAGATGGC2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................T--ATACAGATCCTGCTG----GAGGCG................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................ATTCGG------A---------------------TTG--TCCAATGTGC-----------G--.................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.......................AATTGAACATGGAAACCGTGGTTGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CGTGGTTGCCTTCAACAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................ACCGTGGTTGCCTTCAACAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AATTGAACATGGAAACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTCCAAAGCGAAGATGGC2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................AAGCAATTGAACATGGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................GCTATAGATGCA-TTAGAAACGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................GTTCGTTATGGAGCAGC-------------------------------------------------------------------------------------------------------CG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC--CAG-ATATCC----------------------GT--AAAC--TATA..................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCCAAAGCGAAGATGG.1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TTGGC-------CAG-------------------CACC------CGATA-ACGATAAC.........................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTCCGGACTCTATGACAGC.............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................C-----------G--GGAGGT--ATACAGATCCTCG............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CAATTGAACATGGAAACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
....................AGCAATTGAACATGGAAACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
.......................................CGTGGTTGCCTTCAACAATGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................AAGCAATTGAACATGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TTGAACATGGAAACCGTGGTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCC----------------------GT--AAAC--TATAGC-------------------------CGTA----------.........................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGGACTCTATGACAGCCGA..........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGGACTCTATGACAGCCGACCGCC.....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................ATGGAAACCGTGGTTGCCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................CAATGTGC-----------G--GGAGGT--ATACAG...................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT--GTAACA----------TCTATA--TTTCTCCTTA...................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................TGGAGCAGC-------------------------------------------------------------------------------------------------------CGGC--GTGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................A---------------------TTG--TCCAATGTGC-----------G--GGAGGT--A........................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTCCAAAGCGAAGATGG.2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................T--ATACAGATCCTGCTG----GAGGC.................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGACAGCCGACCGCCC....................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGGACTCTATGACAGCCGAC.........................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGGACTCTATGACAGCCGACCGCC.....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................ATAGATGCA-TTAGAAACGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................G------A---------------------TTG--TCCAATGTGC-----------G--GGA..............................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTCTATGACAGCCGACC........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TGGTTGCCTTCAACAATGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGACCGCCCATTTCCAAAGCGAAGA....2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................TTCAACAATGAGGTAAGCTATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
droEre2
A--GTGAACC---------AAACAATTGAACATGGAAACCGTGGTTGCCTTCAACAATGAGGTAAGCTATAGATTCT-TTTGCAACGAGGTGCGTTGTGGAGCAGC-------------------------------------------------------------------------------------------------------CGGC--GTGGTTACACAATGTCCGGTTGAAGTC-------GGGATTCGG------A---------------------TTG--TCCTATGTGC-----------A--GAAGGT--ATACAGATCCGCCTGGTTGGTGGCGCAGGCAGAGCACCGA-ATTTTCA----------CCGACCAGCG-CCGCCCAGGGTTGCGTTGTGGC-------CAG-------------------CAAC------CGATA-ACGATAACTC-C-----------T--CGTCC--GAG-ATATCC----------------------GT--AAAC--TATAGC-------------------------CGTA----------C-------TAA----ATC-AT-C-T----TTTCTCTTAGCTCTCCGGACTCTATGACAGCCGACCGCCCATTTCCAAGGCGAAGATGGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................GTGGTTGCCTTCAACAATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
droYak3
A--GTGAACC---------AAACAATTGAACATGGAAACCGTGGTTGCCTTCAACAATGAGGTAAGCTATAGATTCT-TTTGCAACGAGGTGCGTTATGGAGCAGC-------------------------------------------------------------------------------------------------------CGGC--GTGGTTACACAATGTCCGGCTGAAGTC-------GGGATTAGG------A---------------------TTG--TCCAATGTGC-----------A-------T--ATACAGATCCTCCTT----GAGGCGCAGGCAGAGCACCAA-ATTTTCA----------CCGACCAGCG-CCGCACAGGGTTGCGTTCTGGC-------CAG-------------------CAAC------CGATA-ACGATAACTC-C-----------T--TGTCC--CAG-ATATCC----------------------GT--AAAC--TATATC-------------------------TGTA------TAAAC-------TAA----ATC-AT-C-C----TTTCTCGTAGCTCTCCGGACTCTATGACAGCCGACCGCCCATTTCCAAGGCGAAGATGGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................GAACATGGAAACCGTGGTTGCCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00201000010000
...........................................................................................................................................................................................................................................................................................................GC-----------A-------T--ATACAGATCCTCCTT----GAGGC.................................................................................................................................................................................................................................................................................................................................2411.00101000000000
droEug1
A--GTGAACC---------GAACAATTGAACATGGAAACAGTGGTTGCCTTCAACAATGAGGTAAGTTATAGAGCCTTTTTGCAATGAGGTGAGTTATAGA---GC-------------------------------------------------------------------------------------------------------CGGC--GTGGTTACACAATGTCCGGTTGAAGTC-AAGTC-GGGATTAGG------AAC------TCC----------TTG--CTCAA----------------A--AAAGGT--ATAGAGATCTTCT-C----AAGGCGCAGGCAGAGCCCCGA-ATTTTCA----------CCGACAAACG-CCGATCAGGGTTGCTTTATCGC-------GAG-------------------CACC------CGATA-ACGATAACGC-AACAAAAACTCCG--TGTCC--CAT-AAATC---------CCGATTCCCGCGGCGT--AAAT-------------------------------------------------------TAA----TTC-CT-------CTGCCTTTCAGCTCTCCGGACTCTATGACAGCCGGCCGCCCATTTCCAAGGCCAAGATGGCSizeHit CountTotal NormTotal
No Reads
droBia1
A--GTGAACC---------GAACAATCGAACATGGAAACAGTGGTTGCCTTCAACAATGAGGTAAGCTATAGAGCGT-TTTGCAATGAGGTGAGTTATACA---GC-------------------------------------------------------------------------------------------------------CGGC--GTGGTTATACAATGCCTGCTCCAAGTC-------AGGATTGGGCCTAGGAC-------------------------TCCAGTGTGC-----------ACGGGCAGG--CTGGAGATCCTCCC-----GTGGCGCAGGAAGAGCCCCGA-AATTTC---------------CAGGGT-CCGTCCAGGGTTGCTCTCTTGC-------GAG-------------------CACC------CGATA-ACGATAACCC-C-----------AGATGCGC--CAGCAAACCC----------------------GTGGAAAC--TTCATA-------------------------TGTG------TA--CCCCGTAGTAA----CTA-CT-T-C----CGTCTTGCAGCTCTCCGGACTCTATGACAGCCGGCCGCCCATTTCCAAGGCCAAGATGGCSizeHit CountTotal NormTotal
No Reads
droTak1
A--GTGAACC---------GAACAATCGAACATGGAAACAGTGGTTGCCTTCAACAATGAGGTAAGCTATAGGGCAT-TTTGCAATGAGGTGAGTTATAGA---GC-------------------------------------------------------------------------------------------------------CGGC--GTGGTTATACAAC--CCGCT--AATCCCGGATC-GGGATTAGGTCGAGGAC-------TCC----------CTGGGCCCGA----------------G--AGAAGC--CCAGAGATCTGTG-C----GAGGCGCAGGAAGAGCCCCGAAATTTTCA----------C-----------CGACCAGGGTTGCTTTCTCGC-------GAG-------------------CACC------CGATA-ACGATAACCC-C-----------G--TGTCC-GCAG-AAATCA----------------------GCAGAAAC--TATA-----------------------------------------C-------TAA----TTCCATGC-C---TGTCTTTTTAGCTCTCCGGACTCTATGACAGCCGGCCGCCCATTTCCAAGGCCAAGATGGCSizeHit CountTotal NormTotal
No Reads
droEle1
A--GTGAACC---------AAACAATTGAACATGGAAACAGTGGTTGCCTTCAACAATGAGGTAAGCTATAGAGCCT-TTTGCAATGAGGTGAGTTATAAG---GC-------------------------------------------------------------------------------------------------------CGGC--GTGGTTACACAATGTCCGGTTAAAGTC-------GGG-----G------AGC-------CCTT---ACATCTT--------------GTATATGTGTACAAAAA--GAGAGTAGATCTTCCT-----GTGGCTCAGGTAGAGTCCCCA-ATTTTCC----------CCGACCAGCG-CCGCTCAGGGTTGCTTT-------------------------------------C------CGATA-ACGATAACCC-CACGGAGGCCCCG--CGGCC--CGG-AAATC---------CCCGTACC-----------------------------------------------TGT---------AAC-------TAA----CTC-CT-C-C----TGTCTTCCAGCTCTCCGGACTCTATGACAGCCGGCCGCCCATTTCCAAGGCTAAGATGGCSizeHit CountTotal NormTotal
No Reads
droRho1
A--GTGAACG---------AAACAATTGATCATGGAAACAGTGGTTGCCTTCAACAATGAGGTAAGCTATAGAGCCT-TTTGCAACGAGGTGAGTTATAAA---GC-------------------------------------------------------------------------------------------------------CGGC--GTGGTTACACAATGTCCGGTTAAATTC-------GGG-----G------AGT-------T-----------------CCTATAT---------GTGTATAAAAA-----GAATGATCTTCCT-----GTAGCGCAGGCAGAGTCCCTA-ATTTTCC----------CCGACCAGCG-CCGCTCAGGGTTGCTT-------------------------------------CC------CGATA-ACGATAACCC-CGCGGGGGCTTCA--CGACC--CAG-AAATC---------CCCGTACC-----------------------------------------------CGT---------AAC-------TAA----CTC-CT-C-C----TGTCTTCCAGCTCTCCGGACTCTATGACAGTCGGCCGCCCATTTCCAAGGCCAAGATGGCSizeHit CountTotal NormTotal
No Reads
droFic1
A--GTGAACC---------GAACAATTGAACATGGAAACAGTGGTTGCCTTCAACAATGAGGTAAGTTATAGAGCCT-TTTGCAACGAGGTGAGTTGTAGA---GC-------------------------------------------------------------------------------------------------------CGGC--GTGGTTACACAATGTTCGTTTGGAGT------------TTCAA------A-------GTCCTT----------------GGTGTGA-----------A--GA------ATAAGGATCA----A----AAGGCACAGGCAGATCACCGAAATTTTCC--T-------CCGAGAAGCACCCGTCCAGGGTTGCTTCATG-C-------GAG-------------------CCTC------CGATAAACGATAACCC-T--------------GGCCC--CAG-A-ACCCGAGAAATCCCCTTACC-----------------------------------------------CGTT--------AAT-------TAA----CTC-CT-T-CGGGCTTTTTTCCAGCTCTCCGGGCTCTATGACACCCGGCCGCCCATTTCCAAGGCCAAGATGGCSizeHit CountTotal NormTotal
No Reads
droKik1
A--GTGAAAC---------GAACAAATGAACATGGAAACCGTCGTGGCTTTCAACAATGAGGTAAGATGGATAAACG-CTGGGAAC-----------------AG-CGCCGG--ATGGATTGTCGG--------------ATTGCCTGCAA-----------------------AAG---GGCTGCGAAGGGTGCAGCCTCGCCG-----GAG--GTGGTTACACAATATCCGGCCAG-------------CACTAGG---------CTG-GGTAATGGTCGCC----------------GC-----------------GG--ATGGAGATCTCTC------------CAGGCAGGGCCCAGA-ATTTTT-----------CCGACAAGCG-CCGCCCAGGGTTGCTTCGCG-CGGTGGCGCAG-------------------CACC------CGATA-ACGATAATCG-C-----------C--AGTCC--CGG-GTCCCC-----------TTACCCGTG-------CCAAA--TGCT-------------------------CATG----------C-------CAA----TGCCATTCG-C--TTCCGTTGCAGCTCTCTGGACTCTATGATAGCCGGCCGCCCATTTCTAAGGCTAAGATGGCSizeHit CountTotal NormTotal
No Reads
droAna3
A--GTGAAAC---------AAATATCTGAAGATGGAAACCGTCGTGGCTTTCAACAATGAGGTAAGTGATTGG-----CG-------------------G--AGGCCGCCGGACT------CTCCGAGTTCTAGGTGTGCATATCGTGCGAAAAAGTGTTTGGCCGGTGCCT----------------AGGGTGGACCCT----GGAG-----GTGTGGCTAA---------------GCGGCTGT--G------------------TCGCCCCAGTTGCT------------------------------------------ATAAAGAGATGTCT-----GCGGCGA---AAAATATCCAA-ATTTCAC----------ATGCCTGGGG-CCGACCAGGGTTGCTCCCG--C-----------------------------------------AGC-AGCGCAGCCC-CGCG----CATCC--C-------CA-C-T-----CCCATGCCAG------TG-------CCCGA--TGCT-------------------------AATA------TA--AT--GTTACA-----TG----CTATT--TTCCTTTGCAGCTCTCCGGACTCTATGACAGCCGACCGCCCATATCCAAGGCCAAGATGGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................TGAAGATGGAAACCGTCGTGGCTTTCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
droBip1
A--GTGAATC---------AAAAATCTGAAGATGGAAACCGTCGTGGCTTTCAACAATGAGGTAAGTGATTGG-----CG-------------------G--AGGCCGCCGGACT------CTCCGAGTTCTAGGTGTGCATGTCGTGCGAAAAAGTGTTTGACCGGTGCCC----------------AGGGAGGAGCCT----GGAG-----GTGTGGTTAA---------------GCCGTTGT--G------------------TCTCCTCAATTGCTATG----------------ATGA--------------------GA--AGTCTTTG------------ACGGCAAATACCTTA-ATTTCAC----------TTGCCTGGGG-CCTTCCAGGGTTGCTCCGG--C-----------------------------------------AGT-AGCGCAGCCC-CGCG----CATCC--C-------CA-C-T-----CCAATGCTCG------TG-------CCTAA--GGCT-------------------------CGTGCTCATGAA--AT--GATA-AA----TG----CTATT--TTCCTTTGCAGCTCTCCGGGCTCTATGACAGCCGGCCGCCTATATCTAAGGCCAAGATGGCSizeHit CountTotal NormTotal
No Reads
dp5
C--GTGAAAC---------CAACAATTGAACATGGAAACTGTTGTGGCTTTCAACAATGAGGTAAGTCCAAGG-----CA-------------------GGGCAGCCGCCGC--TTG------CTG--------------ATTGCGTGAGA-----------------------AAAACTCGCTGCAGAGTACGCAAATTGTTTG-AAGCGTG--GTGGTTATACAACGCCA------ACCACTGA--T------------------CCGATGCAATTGTTACA----------------GTGAATATGTGCATACACA--AAAAATAGTTATTTC------------TAGGCAATGCCCCAA-ATTTGTTCGTACAAGCGCAGCACAGCG-CCGCCCAGGGTTGCATGTTGCC-------TTGCCCGTGATGCTCAACCGTGTACTCGATTGCGATA-ACCACAACCC-C-----------A--TGCCC--------------------------------------------------------------------------------------------AC---TTGTTCTTCCCAT-T-CT--GTCCTTTGCAGCTCTCCGGACTCTATGACAGCCGACCGCCCATATCCAAGGCCAAAATGGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................ATGGAAACTGTTGTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1612.0020000000002
.....................................................ACAATGAGGTAAGTCCAAGG-----..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020200000000
......................CAATTGAACATGGAAACTGTTGTGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGGACTCTATGACAGC.............................1911.0010000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCCGGACTCTATGACAGCCGACC........................2611.0010010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---TTGTTCTTCCCAT-T-CT--GTCCTTTG.....................................................2611.0010000100000
..............................CATGGAAACTGTTGTGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGCCCATATCCAAGGC.........1911.0010100000000
...............................ATGGAAACTGTTGTGGCTTTCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACAGCCGACCGCCCATATCCAAGGC.........2811.0010010000000
droPer2
C--GTGAAAC---------CAACAATTGAACATGGAAACTGTTGTGGCTTTCAACAATGAGGTAAGTCCGAGG-----CA-------------------GGGCAGCCGCCGC--TTG------CTG--------------ATTGCGTGAGA-----------------------AAAACTCGCTGCAAAGTACGCAAATTGTTTG-AAGCGTG--GTGGTTATACAACGCCA------ACCACTGA--T------------------CCGATGCAATTGTTACA----------------GTGAATATGTGCATACACA--AAAAATAGTTATTTC------------TAGGCAATGCCCCAA-ATTTGTTCGTACAAGCGCAGCACAGCG-CCGCCCAGGGTTGCATGTTGCC-------TTGCCCGTGATACTCAACCGTGTACTCGATTGCGATA-ACCACAACCC-C-----------A--TGCCC--------------------------------------------------------------------------------------------AC---TTGTTCTTCCCAT-T-CT--GTCCTTTGCAGCTCTCCGGACTCTATGACAGCCGACCGCCCATATCCAAGGCCAAAATGGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGACAGCCGACCGCCCATATCCT.............2611.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCTCCGGACTCTATGACAGCC............................2411.001100000
.....................................................................................................................................................................................................ATTGTTTG-AAGCGTG--GTGGTTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
droWil2
ATAGTGAACCTGAACCCACGAAAACAGCAACATGGAAACTGTTGTGGCTTTCAACAATGAGGTAAGTCG--GG-----CA-------------------GGACAT-GACCAAA-ATGT----------------------ATA----GCGAGAAGGTATGCGA-GGGTACTGAAAAA---GGCAACAAAGTAACCAATTTTG-TG--AGCAAAGTGCAATTATTCAATCACCA------TAACT---------------------------AGCTATTAGTA-------------AAGTGG-----------A--GAAAATAAAAATATATTTTTC------G------GGTAATAGCCCCGA--TT-T-C----------GCGACAAGCG-CCGCTCAGAGTTGCAATTTGCA-------TTTTTCT---------------TTTTCGATAACGATA-ACAATAACCTCC-----------A--CCTTCGATGGC-AACCA----------------------ATATAAAC--TTGGCAATTGGCTGGCCTGACCTGACCTGATCGTG----------CTCTC---TTTTTCT-----T-T-CTTTCTTGATTACAGCTTTCCGGGCTCTATGACAGCCGTCCACCCATATCCAAGGCCAAAATGGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................TGTGGCTTTCAACAATGAGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
..............................................................TAAGTCG--GG-----CA-------------------GGACAT-GAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.................................................TTCAACAATGAGGTAAGTCG--GG-----CA-------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
...................................................................................................................................................................................................................................................................................ATTAGTA-------------AAGTGG-----------A--GAAAATAAAA.......................................................................................................................................................................................................................................................................................................................................................2411.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCTGGCCTGACCTGACCT..........................................................................................................2111.00110000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCA----------------------ATATAAAC--TTGGCAATTGGCTG........................................................................................................................2711.00110000
............................AACATGGAAACTGTTGTGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001
droVir3
C--ATC-------------------------------------------------------------------------TTGACATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA----------CATGTA-T--TTATTTTTCAGCTCTCCGGGCTCTATGATAGCCGGCCGCCCATATCAAAGGCTAAAATGGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCGCCCATATCAAAG...........1811.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGATAGCCGGCCGCCCAT..................2111.001000000000000000000000000000000000000010000000000000000000000000
droMoj3
T--ATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTTTCAGCTCTCCGGGCTCTATGATAGCCGACCGCCCATATCGAAGGCTAAAATGGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
T--GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCACAGCTCTCCGGACTCTATGATAGCCGGCCGCCCATATCGAAGGCTAAAATGGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 01:20 PM