ID:

dsi_24790

 Coordinate:

2r:5645863-5646012 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-18.6 -18.6 -18.0

Flybase annnotation

CDS [2r_5645674_5645862_-]; exon [2r_5645354_5645862_-]; intron [2r_5645863_5647603_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCATGTGGGGTAATCGCATTCATGTGGATGGCCGGGGCACTTGAACCTGGTTGCCAACGGCCGGCGCAAATTGTTTCTGCTGCGTAGTTGGCTGTGTGGGCGCGGGCCGTCGGGCAGTGGGCCAAGTTTATTGTTTGTTTGGGCTGCTATATATAAAACGGGCAAAAACTAAATCTGTCTCCCTATCTTATCTCCCGCAGGCGCCGACGCTGTCCACACAGGCCACGACGCACTGCAGCCATGGCTTCAC
*********************************************************************......((((((((.....((((((((....))).)))))....))))))))...****************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
...............CCTTTCACGTGGATGGCCGGG...................................................................................................................................................................................................................... 21 3 2 1.00 2 0 0 0 0 2 0 0
....................................................................................................................................................................................................................TCCACACAGGCCACGACGCACTG............... 23 0 1 1.00 1 0 0 1 0 0 0 0
.............................................................................TGCTGCGTAGTTGCCTGTGTGGGCT.................................................................................................................................................... 25 2 1 1.00 1 0 1 0 0 0 0 0
.....................................................................ATTGTTTCTGCTGCGTAGTTGGC.............................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................GTAGTTGGCTGTGTGGGC..................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................GCGCGGGCCGCCGGGCCG..................................................................................................................................... 18 2 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................GCGCGGGCCGTCGGGCAGTGGGCCA.............................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0
..................................................................................CGTAGTTGGCTGTGTGGG...................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0
..............................GCCGGGGCACGTGAA............................................................................................................................................................................................................. 15 1 9 0.11 1 0 0 0 0 0 1 0
.......................GTGCATGGCCGGCGCAC.................................................................................................................................................................................................................. 17 2 15 0.07 1 0 0 0 0 0 0 1
....................................................................................................AGCTAGCCGTCGGGCAGT.................................................................................................................................... 18 3 20 0.05 1 0 0 1 0 0 0 0

Anti-sense strand reads

GGTACACCCCATTAGCGTAAGTACACCTACCGGCCCCGTGAACTTGGACCAACGGTTGCCGGCCGCGTTTAACAAAGACGACGCATCAACCGACACACCCGCGCCCGGCAGCCCGTCACCCGGTTCAAATAACAAACAAACCCGACGATATATATTTTGCCCGTTTTTGATTTAGACAGAGGGATAGAATAGAGGGCGTCCGCGGCTGCGACAGGTGTGTCCGGTGCTGCGTGACGTCGGTACCGAAGTG
******************************************************************************************************************************......((((((((.....((((((((....))).)))))....))))))))...********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
.........................................ACTACGACCAACGGTTG................................................................................................................................................................................................ 17 2 20 0.30 6 6 0 0
........................................AACTACGACCAACGGTTGC............................................................................................................................................................................................... 19 2 5 0.20 1 1 0 0
................................................................................................................................................................................................................GGACAGATGTGTCCGGGGC....................... 19 3 8 0.13 1 1 0 0
........................................ATCTACGACCAACGGTTGCC.............................................................................................................................................................................................. 20 3 9 0.11 1 1 0 0
........................................AACTACGACCAACGGTTG................................................................................................................................................................................................ 18 2 9 0.11 1 1 0 0
.................................................................................................................................................................................................GGCCGTCCGCGGTTGCGTC...................................... 19 3 20 0.05 1 0 1 0
...........................................................AGGCCGCGTTTAACACA.............................................................................................................................................................................. 17 2 20 0.05 1 0 0 1
........................................TACTACGACCAACGGTTGC............................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0
........................................AACTACGACCAACGGTT................................................................................................................................................................................................. 17 2 20 0.05 1 1 0 0

Generated: 04/23/2015 at 08:24 PM