ID:

dsi_24751

 Coordinate:

3r:10463691-10463751 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-4.1 -3.6 -3.5

Flybase annnotation

exon [3r_10463295_10463690_-]; CDS [3r_10463295_10463690_-]; CDS [3r_10463752_10463899_-]; exon [3r_10463752_10463899_-]; intron [3r_10463691_10463751_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------##################################################
TTTCTGCAGAATTTGGATGCCATAAGAGGGGATAAGCTGGTGGAAAACAAGTTAGTTTAAGGGGCAAAAATTGTATTGAAATTCTAATATTATTATTTTTCTCATTTCAAGATACGCCCTGTACGTGGTGAATAACTACCATTTGGAGCACATTTGGCCAC
**************************************************...........(((.((((((.((((((......))))))....)))))))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
........................................................................GTATTGAAATTCTAA.......................................................................... 15 0 1 2.00 2 2 0 0 0 0 0
.......................................................................TGTATTGAAATTCTA........................................................................... 15 0 1 2.00 2 0 2 0 0 0 0
.....................................................................ACTGTATTGAAATTCTA........................................................................... 17 1 2 1.50 3 3 0 0 0 0 0
.....................................................................ACTGTATTGAAATTCTAA.......................................................................... 18 1 1 1.00 1 1 0 0 0 0 0
.......................................................................TGTATTGAAATTCTAA.......................................................................... 16 0 1 1.00 1 0 1 0 0 0 0
....TGCAGAATTTGGATGCCATAAGAGGGGA................................................................................................................................. 28 0 1 1.00 1 0 0 1 0 0 0
....................................................................GACTGTATTGAAATTCTA........................................................................... 18 2 5 0.60 3 1 2 0 0 0 0
......................................................................CTGTATTGAAATTCTA........................................................................... 16 1 6 0.50 3 0 3 0 0 0 0
......................................................................CTGTATTGAAATTCTAA.......................................................................... 17 1 3 0.33 1 1 0 0 0 0 0
...............................................CAAGTTGGTTTAAGG................................................................................................... 15 1 12 0.33 4 0 0 0 3 1 0
....................................................................GACTGTATTGAAATTCT............................................................................ 17 2 20 0.15 3 0 3 0 0 0 0
........................................................................GTATTGAAATTCTAACCT....................................................................... 18 2 9 0.11 1 0 1 0 0 0 0
........................................................................GTACTGAAATTCTAA.......................................................................... 15 1 13 0.08 1 0 0 0 1 0 0
.......................................................................TGTATTGAAATTCTAACC........................................................................ 18 2 14 0.07 1 1 0 0 0 0 0
...........................GGGGATCAGCTAGTGGA..................................................................................................................... 17 2 19 0.05 1 0 0 0 0 0 1
............................GTGATAAGCTGGAGGAA.................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0
....................................................................GAATGTATTGAAATTCTA........................................................................... 18 2 20 0.05 1 1 0 0 0 0 0
.....................................................................ACTGTATTGAAATTC............................................................................. 15 1 20 0.05 1 1 0 0 0 0 0
.....................................................................AATGTATTGAAATTCT............................................................................ 16 1 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

AAAGACGTCTTAAACCTACGGTATTCTCCCCTATTCGACCACCTTTTGTTCAATCAAATTCCCCGTTTTTAACATAACTTTAAGATTATAATAATAAAAAGAGTAAAGTTCTATGCGGGACATGCACCACTTATTGATGGTAAACCTCGTGTAAACCGGTG
**************************************************...........(((.((((((.((((((......))))))....)))))))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/24/2015 at 10:41 AM