ID:

dsi_24687

 Coordinate:

2l:12096286-12096435 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.9 -11.2 -11.0 -11.0

Flybase annnotation

three_prime_UTR [2l_12095707_12096768_+]; exon [2l_12095663_12096768_+]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
AGCACTTGTCGCGTCGTCGTTTTCTTTTGGTTTACTACTTTGTATAAACTGTAAGCATTAAATAGCATACACGTGCATGCCTAAATCGCGCGCAAGACGTGAATTTCTTTAAAATACTAAAACTAAAGCTGCAAGCTACCCAATTTTTGTATATGTAAGCAAAAGTACGATCCCGAGACTCCTTTCCCCATCCAGCTTCCTGTATGCGCCTTTAAATTGCAAATTTGTTAAATACCCCGCGAAATGCATT
*****************************************************************************........((..........((((..((((((....((((.((((....((((...))))......)))).))))....))).)))..)))).......))************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M025
embryo
 GSM343915
embryo
.....................................................................................................................................................TATATGTAAGCAAAAGTACGATCCCGAGA........................................................................ 29 0 1 10.00 10 8 0 0 0 2 0 0 0 0 0 0 0
....................................................................................................................................................GTATATGTAAGCAAAAGTACGATCCCGA.......................................................................... 28 0 1 9.00 9 5 0 0 0 4 0 0 0 0 0 0 0
.........................................................................................................................................................TGTAAGCAAAAGTACGATCCCGAGAC....................................................................... 26 0 1 9.00 9 2 2 1 1 2 1 0 0 0 0 0 0
.......................................................................................................................................................TATGTAAGCAAAAGTACGATCCCGAGA........................................................................ 27 0 1 8.00 8 7 0 0 0 1 0 0 0 0 0 0 0
......................................TTTGTATAAACTGTAAGCATTAAATA.......................................................................................................................................................................................... 26 0 1 7.00 7 4 0 1 0 1 0 0 1 0 0 0 0
.............................................................................................................................................................AGCAAAAGTACGATCCCGAGACTC..................................................................... 24 0 1 6.00 6 0 0 5 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TGCGCCTTTAAATTGCAAATTTGTTAAA.................. 28 0 1 6.00 6 2 0 0 0 3 0 0 1 0 0 0 0
...................................TACTTTGTATAAACTGTAAGCATTAAA............................................................................................................................................................................................ 27 0 1 6.00 6 1 0 1 4 0 0 0 0 0 0 0 0
...................................TACTTTGTATAAACTGTAAGCATT............................................................................................................................................................................................... 24 0 1 5.00 5 2 0 0 1 1 1 0 0 0 0 0 0
........................................................................................................................................................ATGTAAGCAAAAGTACGATCCCGAGA........................................................................ 26 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGTAAGCAAAAGTACGATCCCGAGA........................................................................ 25 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TGCCTAAATCGCGCGCAAAACGTGAATT................................................................................................................................................. 28 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0
......TGTCGCGTCGTCGTTTTCTTTTGGTT.......................................................................................................................................................................................................................... 26 0 1 4.00 4 2 0 1 1 0 0 0 0 0 0 0 0
............................................TAAACTGTAAGCATTAAATAGCCTACA................................................................................................................................................................................... 27 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TGCCTAAATCGCGCGCAAGACGTGAA................................................................................................................................................... 26 0 1 4.00 4 1 3 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TACGATCCCGAGACTCCTTTCCCCATC.......................................................... 27 0 1 4.00 4 2 0 0 2 0 0 0 0 0 0 0 0
.............................................................................TGCCTAAATCGCGCGCAAGACGTGAATT................................................................................................................................................. 28 0 1 3.00 3 0 0 0 0 3 0 0 0 0 0 0 0
............................................TAAACTGTAAGCATTAAATAGCA....................................................................................................................................................................................... 23 0 1 3.00 3 0 0 1 2 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TACGATCCCGAGACTCCTTT................................................................. 20 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................AGCAAAAGTACGATCCCGAGACTCCTT.................................................................. 27 0 1 3.00 3 0 0 0 1 0 1 0 1 0 0 0 0
.........................................................................................................................................................................................................................TGCAAATTTGTTAAATACCCCGCGAAA...... 27 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
............................................TAAACTGTAAGCATTAAATAGCCTA..................................................................................................................................................................................... 25 1 1 3.00 3 2 0 0 0 1 0 0 0 0 0 0 0
........................................TGTATAAACTGTAAGCATTAAATAGCA....................................................................................................................................................................................... 27 0 1 3.00 3 0 0 1 2 0 0 0 0 0 0 0 0
.............................................................................................................................................................................CGAGACTCTTTTCCCGCTCCA........................................................ 21 3 3 2.33 7 0 1 0 0 0 0 0 4 2 0 0 0
............................................TAAACTGTAAGCATTAAATAGCATA..................................................................................................................................................................................... 25 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
......................................TTTGTATAAACTGTAAGCATTAAATAGC........................................................................................................................................................................................ 28 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0
......................................TTTGTATAAACTGTAAGCATTAAAT........................................................................................................................................................................................... 25 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
........................................TGTATAAACTGTAAGCATTAAATA.......................................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................TTTTGTATATGTAAGCAAAAGTACGA................................................................................ 26 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................AGCAAAAGTACGATCCCGAGACTCC.................................................................... 25 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0
............................................TAAACTGTAAGCATTAAATAGCC....................................................................................................................................................................................... 23 1 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0
................................TACTACTTTGTATAAACTGTAAGCATTAAA............................................................................................................................................................................................ 30 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0
....................................................................................................................................................GTATATGTAAGCAAAAGTACGATCCCGAGA........................................................................ 30 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
............................................TAAACTGTAAGCATTAAATAGCAT...................................................................................................................................................................................... 24 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
........................................TGTATAAACTGTAAGCATTAAATAGC........................................................................................................................................................................................ 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGTAAGCAAAAGTACGATCCCGAGACTCC.................................................................... 29 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGTAAGCAAAAGTACGATCCCGAGACA...................................................................... 27 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
.....TTGTCGCGTCGTCGTTTTCTTTTGGT........................................................................................................................................................................................................................... 26 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0
..........................................TATAAACTGTAAGCATTAAATAGCC....................................................................................................................................................................................... 25 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TTCCTGTATGCGCCTTTAAATTGC.............................. 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.......................................TTGTATAAACTGTAAGCATTAAATAGCATA..................................................................................................................................................................................... 30 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGTAAGCAAAAGTACGATCCCGAGACTC..................................................................... 28 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TATGTAAGCAAAAGTACGATCCCGAGAT....................................................................... 28 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................CGAGACTCCTTTCCCCATCCAGCTTCC.................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TAAAGCTGCAAGCTACCCAATTTTTGTA................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TCCCGAGACTCCTTTCCCCATCCAA....................................................... 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................TTTTGTATAAACTGTAAGC.................................................................................................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................ACCCAATTTTTGTATATGTAAGCA......................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................GTAAGCAAAAGTACGATCCCGAGACT...................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................TACTTTGTATAAACTGTAAGCATTAAAT........................................................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................CCCCATCCAGCTTCCTGTATGCGCC........................................ 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................TAGCATACACGTGCATGC.......................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................................CTTTGTATAAACTGTAAGCATTAAA............................................................................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................AAAAGTACGATCCCGAGACTCCTTTCC............................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................CAAAAGTACGATCCCGAGACTC..................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................AGTACGATCCCGAGACTCCTTTCCCCA............................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TGCGCCTTTAAATTGCAAATTTGTTAA................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................GGCCTAAATCGCGCGCAAAACGTGAATT................................................................................................................................................. 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TGCCTAAATCGCGCGCAAGACGTGAAT.................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................AGCAAAAGTACGATCCCGAGACTCCT................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................TAAAATACTAAAACTAAAGCTGCAAGC.................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TAAGCAAAAGTACGATCCCGAGACTCC.................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................TCGCGCGCAAGACGTGAATTTCT.............................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................TTTGTATATGTAAGCAAAAGTACGATCC............................................................................. 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..........................................TATAAACTGTAAGCATTAAATAGCTTA..................................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................TGCATGCCTAAATCGCGCGCAAGACGTGA.................................................................................................................................................... 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................TGCCCAATTTTTGTATATGTAAGCAAAAG..................................................................................... 29 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................TTTGGTTTACTACTTTGTATA............................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................AAAAGTACGATCCCGAGACTCCTTTCCCC............................................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GTTAAATACCCCGCGAAATGCAT. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TAAATTGCAAATTTGTTAAATACCCCGCGA........ 30 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................TGCATGCCTAAATCGCGC............................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................TCGCGCGCAAGACGTGAATTTCTTTAA.......................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................ATAAACTGTAAGCATTAAAA........................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................AAAGTACGATCCCGAGA........................................................................ 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................TTTGTATAAAGTGTAAGCATTAAATA.......................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................GCGCGCAAGACGTGA.................................................................................................................................................... 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................AGTACGATCCCGAGACTCCTTT................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TTCCTGTATGCGCCTTTAAATTGCA............................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CCTGTATGCGCCTTTAAATTGCA............................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................................................................................TGTTAAATACCCCGCGAA....... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TTCCTGTATGCGCCTTTAAATTGCAAA........................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................GATCCCGAGACTCCTTTCCCCA............................................................ 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..........................................TATAAACTGTAAGCATTAAATAGC........................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGTAAGCAAAAGTACGATCCCGAGACAA..................................................................... 28 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGTAAGCAAAAGTACGATCCCGAGAT....................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................TTTGTATAAACTGTAAGCATTAAATAGCCTA..................................................................................................................................................................................... 31 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GTAAGCAAAAGTACGATCCCGAGA........................................................................ 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................GCAAAAGTACGATCCCGAGACTCCTT.................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TACGATCCCGAGACTCCTTTCA............................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................GACTCCTTTCCCCATCCAGCTTCCTGTA.............................................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................ATATGTAAGCAAAAGTACGATCCCGAGA........................................................................ 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
................................TACTACTTTGTATAAACTGTAAGCATT............................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................GAGACTCCTTTCCCCATCCAGCTT.................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................TGTATAAACTGTAAGCATTAAATAGCAA...................................................................................................................................................................................... 28 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................TTACTACTTTGTATAAACTGTAAGC.................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................ATCCCGAGACTCCTTTCCCCATCCAGC...................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........CGCGTCGTCGTTTTCTTTTGGTTT......................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...ACTTGTCGCGTCGTCGTT..................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TCCCGAGACTCCTTTCCCC............................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGCAAATTTGTTAAATACCCCGC.......... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..................................................GTAAGCATTAAATAGCATA..................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................AGTACGATCCCGAGACTCCTTTCCCC............................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................GCAAAAGTACGATCCCGAGATTCCT................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................TGTAAGCAAAAGTACGATCTTGAGA........................................................................ 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................TTCTTTTGGTTTACTACTTTGTT.............................................................................................................................................................................................................. 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................TATATGTAAGCAAAAGTACGATCCCGA.......................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................CAGCTTCCTGTATGCGCCTTTAAATTGC.............................. 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
..........................................TATAAACTGTAAGCATTAAATAGAAA...................................................................................................................................................................................... 26 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................TAAGCAAAAGTACGATCCCGAGAT....................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................CATGCCTAAATCGCGCGCAAAACGTGA.................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................CCGAGACTCCTTTCCCCATCCAGCTTC................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TTTAAAATACTAAAACTAAAGCTGCA..................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................TATATGTAAGCAAAAGTACGATCCCGAGAC....................................................................... 30 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................ATATGTAAGCAAAAGTACGATCCCGA.......................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................AGCAAAAGTACGATCCCGAGATTCCT................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................CATGCCTAAATCGCGCGCAAGAC........................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................TGTATATGTAAGCAAAAGTACG................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.......................................TTGTATAAACTGTAAGCATTAAATAGC........................................................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GTAAGCAAAAGTACGATCCCGAGACTCCT................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................CTAAATCGCGCGCAAGACGTGAAT.................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................CTTTGTATAAACTGTAAGC.................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................TCCCGAGACTCCTTTCCCCATCCAGC...................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................CGCCTTTAAATTGCAAATTTGT...................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TTTGTTAAATACCCTGCGAAATGCA.. 25 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................TAAATCGCGCGCAAGACGTGAATTTC............................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TGTATATGTAAGCAAAAGTACGATCC............................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................TATAAACTGTAAGCATTAAATAGCATA..................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TGTATGCGCCTTTAAATT................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................TATAAACTGTAAGCATTAAATAGCCT...................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TCCCGAGACTCCTTTCCCCATCCAGCT..................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TACTAAAACTAAAGCTGCAAGCTACCCA............................................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TGTATGCGCCTTTAAATTGCAAATT......................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ATCCCGAGACTCCTTTCCCCATCCAG....................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................AGCAAAAGTACGATCCC............................................................................ 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................ATGCCTAAATCGCGCGCAAGACGTGAA................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.............TCGTCGTTTTCTTTTGGTTTACTAC.................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................AAGCTGCAAGCTACCCAATTTTTG..................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TTTAAGCAAAAGTACGATCCCGAGA........................................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................CCGAGACTCCTTTCCCCATCCAGCT..................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................TAGCATACACGTGCA............................................................................................................................................................................. 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TGTATATGTAAGCAAAAGTACGATCCCGAGA........................................................................ 31 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TATATGTAAGCAAAAGT.................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................TTTGTATAAACTGTAAGCATTAAATAGCA....................................................................................................................................................................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TTCCTGTATGCGCCTTTAAATTGCAAATT......................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TTTAAATTGCAAATTTGTTAAATACCC............. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................ACGATCCCGAGACTCCTTTCCCCATCCAGC...................................................... 30 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................TACGATCCCGAGATTCCTTTCCCCATCCA........................................................ 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................TTGTATAAACTGTAAGCATTAAATA.......................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TCCTTTCCCCATCCAGCTTC................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TATGTAAGCAAAAGTACGATCCCGAGACA...................................................................... 29 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................AAAAGTACGATCCCGAGACTCCTTT................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................TTTGTATAAACTGTAAGCATTAGA............................................................................................................................................................................................ 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................TAAATAGCATACACGTGCAT............................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................AAATACCCCGCGAAATGCATT 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
........................................TGTATAAACTGTAAGCATTAAATAGCAT...................................................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TAAGCAAAAGTACGATCCCGAG......................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................CGAGACTCCTTTCCCCATCCAGCTTCA.................................................. 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......TGTCGCGTCGTCGTTTTCTTTTGGT........................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................GTATAAACTGTAAGCATTAAATAGCA....................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................GCGCGCAAGACGTGAA................................................................................................................................................... 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................TTTGTATAAACTGTAAGCATTAAATAGCC....................................................................................................................................................................................... 29 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................TGTATAAACTGTAAGCATTAAATAGCC....................................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................CAGCTTCCTGTATGCGCCTT...................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGCAAATTTGTTAAATACCCCGCGAA....... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TCCCCATCCAGCTTCCTGTATGCGCCTT...................................... 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................GTAAGCAAAAGTACGATCCCGAGACTC..................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................ATATGTAAGCAAAAGTACGATCCCG........................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................ATCGCGCGCAAGACGTG..................................................................................................................................................... 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TACGATCCCGAGACTCCTTTCCCCATCC......................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................TTCTTTTGGTTTACTACTTTGTA.............................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
....................TTTCTTTTGGTTTACTACTTTGTA.............................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................CTGCAAGCTACCCAAT.......................................................................................................... 16 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................ACGTGAATTTCTTTATAAT....................................................................................................................................... 19 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
..CACTTGTCGAGTCGTC........................................................................................................................................................................................................................................ 16 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................GACGTGAATTTCTTTA........................................................................................................................................... 16 0 8 0.50 4 1 0 0 0 1 0 0 0 2 0 0 0
................................................................................CTAAATCGCGTGAAAGACGA...................................................................................................................................................... 20 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................GACGTGAATTTCTTT............................................................................................................................................ 15 0 8 0.25 2 0 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................GAGTCTCGTTTCCCCCTCCA........................................................ 20 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................ACGTGAATTTCTTTA........................................................................................................................................... 15 0 8 0.25 2 0 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................GCGCAAGACGTGAAG.................................................................................................................................................. 15 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................GACGTGAATTTCTTTATA......................................................................................................................................... 18 1 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................GTACGGTCCCAAGACT...................................................................... 16 2 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

TCGTGAACAGCGCAGCAGCAAAAGAAAACCAAATGATGAAACATATTTGACATTCGTAATTTATCGTATGTGCACGTACGGATTTAGCGCGCGTTCTGCACTTAAAGAAATTTTATGATTTTGATTTCGACGTTCGATGGGTTAAAAACATATACATTCGTTTTCATGCTAGGGCTCTGAGGAAAGGGGTAGGTCGAAGGACATACGCGGAAATTTAACGTTTAAACAATTTATGGGGCGCTTTACGTAA
************************************************************************........((..........((((..((((((....((((.((((....((((...))))......)))).))))....))).)))..)))).......))***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902009
testis
...TGAAGAGCGCTGCAGC....................................................................................................................................................................................................................................... 16 2 20 0.20 4 2 0 2 0 0
..................................................................................................................................................................................GAGGAAAGGGGTAGGGGGAA.................................................... 20 2 9 0.11 1 0 1 0 0 0
..................AAAAAGAAAACCGAATGAT..................................................................................................................................................................................................................... 19 2 17 0.06 1 0 0 0 1 0
......................AGAAGAGTAAATGATGAAACA............................................................................................................................................................................................................... 21 3 18 0.06 1 0 0 0 0 1
................................................................................................................................................................................................................................AAAAACTTATGGGGCGC......... 17 2 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:12096236-12096485 + dsi_24687 AGCACTTGTC--GC-GTCGTCGTTT-T-----CTTTTGGTTTACTAC--T-TTGTATAAACTGTAAGCATTA-----------AATAGCAT--A--CACGTGCATGCCTAAATCGCGCGCA-AGACGTGA--A-TTTCTTTA-AAATAC-----TA-------------AAACTA--AAGCTGCAAGCTA---CCCAAT-TTTTGTATATGTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GACTCCT-TTCCCCATCC-----------------AGCT--TCC--------------------TGTATGCGCCTT-TAAATTGCAAATTTGTTAAATA-CCCCGCGAAATGC---ATT
droSec2 scaffold_16:630436-630685 + AGCACTTGTC--GC-GTCGTCGTTT-T-----CTTTTGGTTTACTAC--T-TTGTATAAACTGTAAGCATTA-----------AATAGCCT--A--CACGTGCATGCCTAAATCGCGCGCA-AAACGTGA--A-TTTCTTTA-AAATAC-----TA-------------AAACTA--AAGCTGCAAGCTA---CCCAAT-TTTTGTATATGTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GACTCCT-TTCCCCATCC-----------------AGCT--TCC--------------------TGTATGCGCCTT-TAAATTGCAAATTTGTTAAATA-CCCCGCGAAATGC---ATT
dm3 chr2L:12440072-12440322 + AGCACTTGTC--GCAGTCGTCGTTT-T-----CTTTTGGTTTACTA---TTTTGTATAAACTGTAAGCATTA-----------AATAGCCT--A--CACGTACATGCCTAAATCGCGCGCA-ATACGTGA--A-TTTCTTTA-AAATAC-----TA-------------AAACTA--AAGCTGCAAGCTA---CCCAAT-TTTTGTATTTGTA--AG--------------------------CGAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GAATCCT-TTCCCCATCC-----------------ATCT--TCC--------------------TGTATGCGCCTT-TAAATTGCAAATTTGTTAAATA-CCCTGCAAAATGC---ATT
droEre2 scaffold_4929:12976356-12976606 - AGCATTTGTC--GCCGTCGTCGTTT-T-----ATTTTGGTTTACTAC--T-TTGTATAAACTGTAAGCATTA-----------AATAGCGT--A--CACGTACATGCCTAAATCGCGCTCA-AGACGTGA--A-TTATTTTA--AATAC-----TA-------------AAACTA--AAGCTGCAAGCTA---CCCAAC-TTTTGTATTTGTA--TG--------------------------CGAA-AG--CACGA-----------------T---------------CCC-AA-------------------------AACTCCCCCTCCCAATCC-----------------AGCT--TCC--------------------TGTATGCGCCTT-TAAATTGCAAATTTGTTACATA-CCCTGCAAAATAC---AAT
droYak3 2L:8876584-8876829 + AGCATTTGTC--GCCGTCGTCGTTT-T-----ATTTTGGTTTACTAC--T-TTGTATAAACTGTAAGCATTA-----------AATAGCAT--A--CACATACATGCCTAAATCGCGCTCA-AGACGTGA--A-TT-TTTTA--CATAC-----TA-------------AAACTA--AAGCTGCAAGCTA---CCCAAT-TTTTGTATTTGTA--TG--------------------------CGAA-AG--CACTA-----------------T---------------CCC-AA-------------------------AACTCC----CCCCATCC-----------------AGCT--TCC--------------------TGTATGCGCCTT-TAAATTGCAAATTTGTTACATA-CCCTGCAAAATAC---AAT
droEug1 scf7180000409122:826563-826808 + AGAATTAGT--------CGTCGTTT-A-----ACTTTGGTTTACTAT--TTTTGTATAAACTGTAGGCATAA-----------AAAAGCGT-----CACGTACATGCCTAAATCGCGCGCA-AGACGTGA--A-TT-TTTTA---ATAC-----TA-----------A-AAACTAAAAAGCTGCAAGCTA---CCCCAT-TTTTGTATTTGTACAAG--------------------------CAAA-AG--CTAGA-----------------A---------------CCC-AA-------------------------TCCTCCT-T-ACCCATTC-----------------AACT--TCC--------------------TGTATGCGCCTT-CAAATTGCAAATTTGTTAAATA-CCCTGCAAAATAC---AAT
droBia1 scf7180000302422:529791-530038 - AGCATTAGAA--GCCGTCGTCGTTT-T-----A--TTGGTTTACTAC--TTTTGTACAAACTGTAAGCATTA-----------AATTCCGT--A--CGCGTTTATGCCTAAATCGCGCACG-AGACGTGA--CAT-TTTTTA---AAAC-----TA-------------AAACTA--AAGCTGCAAGCTA---CCCCAT-TTTTGTATTTGTACACG--------------------------CGAA-AG--CAAG------------------T---------------CCG-AA-------------------------CCCTCCT-C-CCCCATTC-----------------AGCT--TCC--------------------TGTATGCGCCTT-CAAATTTCAAATTTGTTAAAAC-CCCTGCAAAATAC---TAT
droTak1 scf7180000415865:154763-155011 - AGCATTGGTC--GCCGTCGTCGTTT-T------TATTGGTTTACTAC--TTTTGTATAAACTGTAAGCATTA-----------AATAGCGT--A--CACATACATGCCTAAATCGCGCGCC-AGACGTGA--CAT-TTTTTA---ATAC-----TA-------------AAACTA--AAGCTGCAAGCTA---CCCCAT-TTTTGTATTTGTACAAG--------------------------CGAA-AG--CAAGT-----------------T---------------CCC-AA-------------------------CCCTCCT-C-CCCCATTC-----------------AGCT--TCC--------------------TGTATGCGCCTT-CAAATTGCAAATTTGTTAG-TA-CCCAGCAAGATAC---AAT
droEle1 scf7180000491028:2672328-2672581 - AGCATTAGTT--GCCGTCGTCGTTT-T-----ATTTTGGTTTACTAC--TTTTGTATAAACTGTAAGCATTA-----------AATAGCGT--A--CACGTACATGCCTAAATCGCGCGCA-AGACGTGA--A-CTTTTTTT--AATAC-----TA-------------AAACTA--AAGCTGCAAGCTA---CCCAATTTTTTGTATTTGTACAAT--------------------------CGAAAAG--CAAAG-----------------T---------------CCCCGA-------------------------CCCTTCT-C-ACCCATTC-----------------AGCT--TCC--------------------TGTATGCGCCTT-CAAATTGCAAATTTGTTAAATA-CCCTGCAA-ATAC---AAT
droRho1 scf7180000780043:303415-303666 + AAGATTAGTT--GCCGTCGTCGTTT-T-----ATTTTGGTTTAATAC--TTTTGTATAAACTGTAAGCATTA-----------AATAGCGT--A--CACGTACATGCCTAAATCGCGCGGA-AGACGTGA--AAT-TTTTTA---ATAC-----TA-------------AAACTA--AAGCTGCAAGCTA---CCCAAT-TTTTGTATTTGTACAAG--------------------------CGAAAAG--CAAAA-----------------T---------------CCCCGA-------------------------TCCCCCT-T-ACCCATTC-----------------AGCT--TCC--------------------TGTATGCGCCTT-CAAATTGCAAATTTGTTAAATA-CCCTGCAA-ATAC---AAT
droFic1 scf7180000454015:326399-326653 + AGCATTAGTC--GCCGTCGTCGTTT-T-----AATTTGGTTTACTAC--TTTTGTATAAACTGTAAGCATCA-----------AATAGCGT--A--CACGTACATGCCTAAATCGCGCGCA-AGTCGTGA--CAT--TTTTA---ATAC-----TA-------------AAACTA--AAGCTGCAAGCTA---CCCAATTTTTTGTATTTGTACAAG--------------------------CGAG-GA--AATGT-----------------T---------------CCC-AG---------------------CAACCACTCCT-T-CCCCATCC-----------------AGCC--TCC--------------------TGTATGCGCCTTTTAAATTGCAAATTTGTTAGATA-CCCCACAAAA-AC---AAT
droKik1 scf7180000302472:797420-797668 + AGC------------------GATT-TATTTACCTTTGGTTTACTACCTTTTTGTATAAACTGTAAGCATTA------AATTAAATAGCGT--ACACACAAACATGCCTAAATCGCGCGTAGAGTCGTGACAA-TT-TTTTA-------------A-------------AAACTA--AAGCTGCAAGCTAA--ACCAAT-TTTTGTATTTGTACAAG--------------------------CGAAAA-----AG------------------G---------------CCC-AA-------------------------CCCTCCT-TCCCCCATTC-----------------AGCT--TCCC--T----------------TGTA-GCGCCTT-CAAATTGCAAATTTGTTAATTA-TTCTGCAAAATAGTGGAAT
droAna3 scaffold_12916:12954144-12954393 - AGGATTAGTC--GCCGCCATCGGTA-T-----ACTTTCGTTTATTAC--TTTTGTATAAAATGTAAGAGTTA-----------CATGCCCCAAACACACACACATGCCTA-----------------------------------------------------------AAACTA--CAGCTGCAAGCTAGCCCCCATT-TTTTGTAATCATAGAAG--------------------------TGAAAAG--CAAGAA--------GC------T---------------GCC-----AGGCTCCGCCGAGAGGATCCAGTTGCTCCT-T-TCCCATTC-----------------GACT--TCCC-------------------TGTATGCGCCTTTTAAATTGCAAATTTGTTAGATG-TCCCGCAA-ATAC---AAT
droBip1 scf7180000396580:571158-571428 + AACATTGGTA--GCCGCCATCGGTA-TACAT-ACTTTCGTTTATTAC--TTTTGTATAAAATATAAGAATAA-----------CACGCCCA--A--CACATGCAGGCCTA-ACCGCGCTCA-AGTCGCGA--A-TTTTTTTA--AGAAC-----T--------------AAACTA--CAGCTGCAAGCTA---CCC--T-TTTTGTATTCGTAGAAG--------------------------TGAGACG--CAAGC-----------------T---------------GCC-----AGGCTCCGCCGC--GGATCCAGCCGCTCCC-T-TCCCATTC-----------------GGCT--TCC--------------------TGTACGCGCCTT-TAAATTGCAAATTTGTTAGATG-TCCCGCAA-ACAC---ATT
dp5 Unknown_group_542:412-703 + AGAAAAAGTCGAGCCGCCGTCGTTTTT-----ATTTTGGTCTATTAC--TTTTGTATAAACTGTAAGCATTA-----------TATAACGT--A--CACGTACATGCCTAAATCACGCGCA-AGTCGTGA--CAT-TTTTTA--AAAAC-----TA-----------AAGAACTA-AAAGCTGCAAGCTA---CCCAAT-TTTTATATTTATACAAG--------------------------CGAAAAG--TAAGAA--------ATA--T-AT---------------CCG-AACCGGTCTCCGCCAC--GGTTCCCCATCCC--------CCATTCCCAT-------------AGAT-TTCCCCTT----------------TGTATGAGCCTT-TGAATTGCAAATTTGTTAAATAGTCCCGCAAAATCG---TTT
droPer2 scaffold_1:4607516-4607807 + AGAATAAGTCGAGCCGCCGTCGTTTTT-----ATTTTGGTCTATTAC--TTTTGTATAAACTGTAAGCATTA-----------TATAACGT--A--CACGTACATGCCTAAATCACGCGCA-AGTCGTGA--CAT-TTTTTA--AAAAC-----TA-----------AAGAACTA-AAAGCTGCAAGCTA---CCCAAT-TTTTATATTTATACAAG--------------------------CGAAAAG--TAAGAA--------ATA--T-AT---------------CCG-AACCGGTCTCCGCCAC--GGTTCCCCATCCC--------CCATTCCCAT-------------AGAT-TTCCCCTT----------------TGTATGAGCCTT-TGAATTGCAAATTTGTTAAATAGTCCCGCAAAATCG---TTT
droVir3 scaffold_13246:1629730-1629969 + AAAA---GCA--GCAGACGTCGATT-T-----AT--TAGT---------------------TGTAAACATTT-----------A----------------AGCATCATTATATAGTGCGAG-AGTCGTGA--A-TT-TTTTAAAC------------------------AAACTACAAAGCTGCAAGCTG---AACAAT-TTTTATATTTATACAAAACAAAACAAACAAAAAAAAAAAAAAACGAAAAA--CAAAAACAACAAACACAAATGATAAGCGATAAATAATTGCC-AA-------------------------TTCCTCA-A-ATATGTT------------------------TTGCTTC--------------------TCTGCCTT-TGA------AATATGT-------------------------T
droMoj3 scaffold_6500:4286775-4287043 - AGCA--------GCAGACATCGCTT-T-----AT--TAAC--------------------TTGTAAACTTTT-----------AAGAAAAC--A-----------------------------TTCGTGA--A-TT-TTTTA---AAACACAACCAGAAGAAGAATGAAGAACTAAAGAGCTGCAAGCTA---AACAAT-TTTTATATTTATACAAA--------------------------CAAAAAGATTAAGAA--------ACAAAATATAAGCATTAAATAGTTGCC-AA------------------T------TCCTCAG-C-TCCCACTTAAAAAAAAAAGGAAACAATTTTTTTG---CTCTAGTTTTGAAATTATGTAAATGGCTTTT----------TTTGT----TA-TACTACGAAGTAC---ACT
droGri2 scaffold_15252:15604493-15604619 - T----------------TGTCGGTT-T-----AT----------TTA--C-TTGTA---ACTCT------TAAGGCATCATTAAATAG-----------------------------GGCG-AGTCGTGA--A-TT-TTAAA---AAAAGCAACAA-----------AAGAACTA-AAAGCTGCAAGCTT---AACAAT-TTTTATATTTATACGA------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAC---AA-

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGCACTTGTC--GC-GTCGTCGTTT-T-----CTTTTGGTTTACTAC--T-TTGTATAAACTGTAAGCATTA-----------AATAGCAT--A--CACGTGCATGCCTAAATCGCGCGCA-AGACGTGA--A-TTTCTTTA-AAATAC-----TA-------------AAACTA--AAGCTGCAAGCTA---CCCAAT-TTTTGTATATGTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GACTCCT-TTCCCCATCC-----------------AGCT--TCC--------------------TGTATGCGCCTT-TAAATTGCAAATTTGTTAAATA-CCCCGCGAAATGC---ATTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................TATATGTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GA.....................................................................................................................29110.001000000082000000000
............................................................................................................................................................................................................GTATATGTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------.......................................................................................................................2819.00900000054000000000
.................................................................................................................................................................................................................TGTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GAC....................................................................................................................2619.00900010022002011000
...............................................................................................................................................................................................................TATGTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GA.....................................................................................................................2718.00800000071000000000
.................................................T-TTGTATAAACTGTAAGCATTA-----------AATA.................................................................................................................................................................................................................................................................................................................................................................2617.00700000041010001000
.......................................................................................................................................................................................................................AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GACTC..................................................................................................................2416.00600000000000015000
.....................................................................................................................................................................................................................................................................................................................................................................................................TGCGCCTT-TAAATTGCAAATTTGTTAAA......................2816.00600000023010000000
............................................TAC--T-TTGTATAAACTGTAAGCATTA-----------AA...................................................................................................................................................................................................................................................................................................................................................................2716.00600000010000041000
............................................TAC--T-TTGTATAAACTGTAAGCATT.................................................................................................................................................................................................................................................................................................................................................................................2415.00500010021000010000
................................................................................................................................................................................................................ATGTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GA.....................................................................................................................2615.00500000050000000000
.................................................................................................................................................................................................................TGTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GA.....................................................................................................................2515.00500000050000000000
......TGTC--GC-GTCGTCGTTT-T-----CTTTTGGTT...............................................................................................................................................................................................................................................................................................................................................................................................................2614.00400000020000011000
........................................................................................................TGCCTAAATCGCGCGCA-AGACGTGA--A-..................................................................................................................................................................................................................................................................................................................2614.00400000010003000000
............................................................................................................................................................................................................................................................TACGA-----------------T---------------CCC-GA-------------------------GACTCCT-TTCCCCATC......................................................................................................2714.00400000020000020000
........................................................................................................TGCCTAAATCGCGCGCA-AGACGTGA--A-TT................................................................................................................................................................................................................................................................................................................2813.00300000003000000000
........................................................TAAACTGTAAGCATTA-----------AATAGCA..............................................................................................................................................................................................................................................................................................................................................................2313.00300000000000021000
............................................................................................................................................................................................................................................................TACGA-----------------T---------------CCC-GA-------------------------GACTCCT-TT.............................................................................................................2013.00300000000000003000
.......................................................................................................................................................................................................................AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GACTCCT-T..............................................................................................................2713.00300010000010010000
...................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAATTTGTTAAATA-CCCCGCGAAA.........2713.00300000030000000000
....................................................TGTATAAACTGTAAGCATTA-----------AATAGCA..............................................................................................................................................................................................................................................................................................................................................................2713.00300000000000021000
........................................................TAAACTGTAAGCATTA-----------AATAGCAT--A--........................................................................................................................................................................................................................................................................................................................................................2512.00200000000000020000
.................................................T-TTGTATAAACTGTAAGCATTA-----------AATAGC...............................................................................................................................................................................................................................................................................................................................................................2812.00200000010000010000
.................................................T-TTGTATAAACTGTAAGCATTA-----------AAT..................................................................................................................................................................................................................................................................................................................................................................2512.00200000000000020000
....................................................TGTATAAACTGTAAGCATTA-----------AATA.................................................................................................................................................................................................................................................................................................................................................................2412.00200000020000000000
........................................................................................................................................................................................................TTTTGTATATGTA--AG--------------------------CAAA-AG--TACGA-----------------......................................................................................................................................................................2612.00200000010000010000
.......................................................................................................................................................................................................................AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GACTCC.................................................................................................................2512.00200000000001001000
........................................................TAAACTGTAAGCATTA-----------AATAGCC..............................................................................................................................................................................................................................................................................................................................................................2312.00200000011000000000
.........................................TACTAC--T-TTGTATAAACTGTAAGCATTA-----------AA...................................................................................................................................................................................................................................................................................................................................................................3012.00200000002000000000
............................................................................................................................................................................................................GTATATGTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GA.....................................................................................................................3012.00200000020000000000
........................................................TAAACTGTAAGCATTA-----------AATAGCAT--...........................................................................................................................................................................................................................................................................................................................................................2412.00200000000000020000
....................................................TGTATAAACTGTAAGCATTA-----------AATAGC...............................................................................................................................................................................................................................................................................................................................................................2612.00200000020000000000
.................................................................................................................................................................................................................TGTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GACTCC.................................................................................................................2912.00200000000000002000
.................................................................................................................................................................................................................TGTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GACA...................................................................................................................2712.00200000000000020000
.....TTGTC--GC-GTCGTCGTTT-T-----CTTTTGGT................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200010010000000000
......................................................TATAAACTGTAAGCATTA-----------AATAGCC..............................................................................................................................................................................................................................................................................................................................................................2512.00200000020000000000
.......................................................................................................................................................................................................................................................................................................................................................................T--TCC--------------------TGTATGCGCCTT-TAAATTGC..................................2412.00200000020000000000
...................................................TTGTATAAACTGTAAGCATTA-----------AATAGCAT--A--........................................................................................................................................................................................................................................................................................................................................................3012.00200000000000002000
.................................................................................................................................................................................................................TGTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GACTC..................................................................................................................2812.00200000000000002000
...............................................................................................................................................................................................................TATGTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GAT....................................................................................................................2812.00200000020000000000
....................................................................................................................................................................................................................................................................................................C-GA-------------------------GACTCCT-TTCCCCATCC-----------------AGCT--TCC--------------------.......................................................2711.00100000000001000000
.............................................................................................................................................................................TA--AAGCTGCAAGCTA---CCCAAT-TTTTGTA.........................................................................................................................................................................................................................................2811.00100000010000000000
..................................................................................................................................................................................................................................................................................T---------------CCC-GA-------------------------GACTCCT-TTCCCCATCC-----------------AA..................................................................................2511.00100000000000010000
.............................................................................................................................................................................................A---CCCAAT-TTTTGTATATGTA--AG--------------------------CA...................................................................................................................................................................................................2411.00100010000000000000
..................................................................................................................................................................................................................GTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GACT...................................................................................................................2611.00100000000000010000
............................................TAC--T-TTGTATAAACTGTAAGCATTA-----------AAT..................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000001000
...........................................................................................................................................................................................................................................................................................................................................CCCCATCC-----------------AGCT--TCC--------------------TGTATGCGCC.............................................2511.00100010000000000000
.....................................................................................TAGCAT--A--CACGTGCATGC.............................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
..............................................C--T-TTGTATAAACTGTAAGCATTA-----------AA...................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000001000
....................................................................................................................................................................................................................................................AAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GACTCCT-TTCC...........................................................................................................2711.00100000000001000000
...................................................................................................................................................................................................................................................CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GACTC..................................................................................................................2211.00100000000000001000
........................................................................................................................................................................................................................................................AG--TACGA-----------------T---------------CCC-GA-------------------------GACTCCT-TTCCCCA........................................................................................................2711.00100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TGCGCCTT-TAAATTGCAAATTTGTTAA.......................2711.00100000001000000000
........................................................................................................TGCCTAAATCGCGCGCA-AGACGTGA--A-T.................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
.......................................................................................................................................................................................................................AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GACTCCT-...............................................................................................................2611.00100000000000001000
............................................................................................................................................TA-AAATAC-----TA-------------AAACTA--AAGCTGCAAGC............................................................................................................................................................................................................................................................2711.00100000010000000000
...................................................................................................................................................................................................................TA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GACTCC.................................................................................................................2711.00100000000000001000
................................................................................................................TCGCGCGCA-AGACGTGA--A-TTTCT.............................................................................................................................................................................................................................................................................................................2311.00100001000000000000
.........................................................................................................................................................................................................TTTGTATATGTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CC....................................................................................................................................................2811.00100010000000000000
....................................................................................................TGCATGCCTAAATCGCGCGCA-AGACGTGA--....................................................................................................................................................................................................................................................................................................................2911.00100000001000000000
..................................TTTGGTTTACTAC--T-TTGTATA..............................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
....................................................................................................................................................................................................................................................AAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GACTCCT-TTCCCC.........................................................................................................2911.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAATA-CCCCGCGAAATGC---AT.2311.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TAAATTGCAAATTTGTTAAATA-CCCCGCGA...........3011.00100000001000000000
....................................................................................................TGCATGCCTAAATCGCGC..................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
................................................................................................................TCGCGCGCA-AGACGTGA--A-TTTCTTTA-A........................................................................................................................................................................................................................................................................................................2711.00100000000000001000
.......................................................ATAAACTGTAAGCATTA-----------AAA..................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000000000
.....................................................................................................................................................................................................................................................AA-AG--TACGA-----------------T---------------CCC-GA-------------------------GA.....................................................................................................................1711.00100000010000000000
..................................................................................................................GCGCGCA-AGACGTGA--....................................................................................................................................................................................................................................................................................................................1511.00100000000001000000
........................................................................................................................................................................................................................................................AG--TACGA-----------------T---------------CCC-GA-------------------------GACTCCT-TT.............................................................................................................2211.00100000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................T--TCC--------------------TGTATGCGCCTT-TAAATTGCA.................................2511.00100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................CC--------------------TGTATGCGCCTT-TAAATTGCA.................................2311.00100000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TGTTAAATA-CCCCGCGAA..........1811.00100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................T--TCC--------------------TGTATGCGCCTT-TAAATTGCAAA...............................2711.00100000000001000000
...............................................................................................................................................................................................................................................................GA-----------------T---------------CCC-GA-------------------------GACTCCT-TTCCCCA........................................................................................................2211.00100001000000000000
......................................................TATAAACTGTAAGCATTA-----------AATAGC...............................................................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
.................................................................................................................................................................................................................TGTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GACAA..................................................................................................................2811.00100000000000001000
.................................................................................................................................................................................................................TGTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GAT....................................................................................................................2611.00100000010000000000
..................................................................................................................................................................................................................GTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GA.....................................................................................................................2411.00100000000010000000
........................................................................................................................................................................................................................G--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GACTCCT-T..............................................................................................................2611.00100000010000000000
............................................................................................................................................................................................................................................................TACGA-----------------T---------------CCC-GA-------------------------GACTCCT-TTCA...........................................................................................................2211.00100000000000010000
.................................................................................................................................................................................................................................................................................................................................GACTCCT-TTCCCCATCC-----------------AGCT--TCC--------------------TGTA...................................................2811.00100000000000001000
..............................................................................................................................................................................................................ATATGTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GA.....................................................................................................................2811.00100000001000000000
.........................................TACTAC--T-TTGTATAAACTGTAAGCATT.................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
......................................................................................................................................................................................................................................................................................................GA-------------------------GACTCCT-TTCCCCATCC-----------------AGCT--T.............................................................................2411.00100010000000000000
....................................................TGTATAAACTGTAAGCATTA-----------AATAGCAA--...........................................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
........................................TTACTAC--T-TTGTATAAACTGTAAGC....................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
................................................................................................................................................................................................................................................................A-----------------T---------------CCC-GA-------------------------GACTCCT-TTCCCCATCC-----------------AGC.................................................................................2711.00100000000001000000
.........C--GC-GTCGTCGTTT-T-----CTTTTGGTTT..............................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
...ACTTGTC--GC-GTCGTCGTT................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
..................................................................................................................................................................................................................................................................................T---------------CCC-GA-------------------------GACTCCT-TTCCCC.........................................................................................................1911.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAATTTGTTAAATA-CCCCGC.............2311.00100001000000000000
..............................................................GTAAGCATTA-----------AATAGCAT--A--........................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
........................................................................................................................................................................................................................................................AG--TACGA-----------------T---------------CCC-GA-------------------------GACTCCT-TTCCCC.........................................................................................................2611.00100000000000010000
........................T-T-----CTTTTGGTTTACTAC--T-TTGTT................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000001000000000
.............................................................................................................................................................................................................TATATGTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------.......................................................................................................................2711.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................................C-----------------AGCT--TCC--------------------TGTATGCGCCTT-TAAATTGC..................................2811.00101000000000000000
...................................................................................................................................................................................................................TA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GAT....................................................................................................................2411.00100000010000000000
...................................................................................................................................................................................................................................................................................................CC-GA-------------------------GACTCCT-TTCCCCATCC-----------------AGCT--TC............................................................................2711.00100000010000000000
..........................................................................................................................................TTTA-AAATAC-----TA-------------AAACTA--AAGCTGCA...............................................................................................................................................................................................................................................................2611.00100010000000000000
.............................................................................................................................................................................................................TATATGTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GAC....................................................................................................................3011.00100000001000000000
..............................................................................................................................................................................................................ATATGTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------.......................................................................................................................2611.00100000010000000000
......................................................................................................CATGCCTAAATCGCGCGCA-AGAC..........................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
...........................................................................................................................................................................................................TGTATATGTA--AG--------------------------CAAA-AG--TACG........................................................................................................................................................................................2211.00100001000000000000
...................................................TTGTATAAACTGTAAGCATTA-----------AATAGC...............................................................................................................................................................................................................................................................................................................................................................2711.00100000000000001000
..................................................................................................................................................................................................................GTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GACTCCT-...............................................................................................................2911.00100000010000000000
...........................................................................................................CTAAATCGCGCGCA-AGACGTGA--A-T.................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
..............................................C--T-TTGTATAAACTGTAAGC....................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
..................................................................................................................................................................................................................................................................................T---------------CCC-GA-------------------------GACTCCT-TTCCCCATCC-----------------AGC.................................................................................2611.00100001000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................CGCCTT-TAAATTGCAAATTTGT..........................2211.00100000000001000000
............................................................................................................TAAATCGCGCGCA-AGACGTGA--A-TTTC..............................................................................................................................................................................................................................................................................................................2611.00100000000001000000
...........................................................................................................................................................................................................TGTATATGTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CC....................................................................................................................................................2611.00100000000001000000
......................................................TATAAACTGTAAGCATTA-----------AATAGCAT--A--........................................................................................................................................................................................................................................................................................................................................................2711.00100000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................TGTATGCGCCTT-TAAATT....................................1811.00100000000001000000
..................................................................................................................................................................................................................................................................................T---------------CCC-GA-------------------------GACTCCT-TTCCCCATCC-----------------AGCT--..............................................................................2711.00100000000001000000
..................................................................................................................................................TAC-----TA-------------AAACTA--AAGCTGCAAGCTA---CCCA...................................................................................................................................................................................................................................................2811.00100000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................TGTATGCGCCTT-TAAATTGCAAATT.............................2511.00100000000001000000
................................................................................................................................................................................................................................................................A-----------------T---------------CCC-GA-------------------------GACTCCT-TTCCCCATCC-----------------AG..................................................................................2611.00100000000001000000
.......................................................................................................................................................................................................................AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-..................................................................................................................................................1711.00100000000001000000
.......................................................................................................ATGCCTAAATCGCGCGCA-AGACGTGA--A-..................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
................TCGTCGTTT-T-----CTTTTGGTTTACTAC--.......................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
.................................................................................................................................................................................AAGCTGCAAGCTA---CCCAAT-TTTTG...........................................................................................................................................................................................................................................2411.00100000000000001000
...................................................................................................................................................................................................................................................................................................CC-GA-------------------------GACTCCT-TTCCCCATCC-----------------AGCT--..............................................................................2511.00100000000001000000
.....................................................................................TAGCAT--A--CACGTGCA................................................................................................................................................................................................................................................................................................................................................1511.00100000000001000000
...........................................................................................................................................................................................................TGTATATGTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GA.....................................................................................................................3111.00100000010000000000
.............................................................................................................................................................................................................TATATGTA--AG--------------------------CAAA-AG--T...........................................................................................................................................................................................1711.00100000010000000000
.................................................T-TTGTATAAACTGTAAGCATTA-----------AATAGCA..............................................................................................................................................................................................................................................................................................................................................................2911.00100000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................T--TCC--------------------TGTATGCGCCTT-TAAATTGCAAATT.............................2911.00100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TT-TAAATTGCAAATTTGTTAAATA-CCC................2711.00100000000001000000
.............................................................................................................................................................................................................................................................ACGA-----------------T---------------CCC-GA-------------------------GACTCCT-TTCCCCATCC-----------------AGC.................................................................................3011.00100000001000000000
...................................................TTGTATAAACTGTAAGCATTA-----------AATA.................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................TCCT-TTCCCCATCC-----------------AGCT--TC............................................................................2011.00100000000001000000
...............................................................................................................................................................................................................TATGTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GACA...................................................................................................................2911.00100000000000001000
....................................................................................................................................................................................................................................................AAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GACTCCT-TT.............................................................................................................2511.00100000000001000000
......................................................................TA-----------AATAGCAT--A--CACGTGCAT...............................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AAATA-CCCCGCGAAATGC---ATT2111.00100001000000000000
....................................................TGTATAAACTGTAAGCATTA-----------AATAGCAT--...........................................................................................................................................................................................................................................................................................................................................................2811.00100000000000001000
...................................................................................................................................................................................................................TA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------G......................................................................................................................2211.00100000010000000000
....................................................................................................................................................................................................................................................................................................C-GA-------------------------GACTCCT-TTCCCCATCC-----------------AGCT--TCA--------------------.......................................................2711.00100000000001000000
......TGTC--GC-GTCGTCGTTT-T-----CTTTTGGT................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
.....................................................GTATAAACTGTAAGCATTA-----------AATAGCA..............................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
..................................................................................................................GCGCGCA-AGACGTGA--A-..................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
.................................................T-TTGTATAAACTGTAAGCATTA-----------AATAGCC..............................................................................................................................................................................................................................................................................................................................................................2911.00100000001000000000
....................................................TGTATAAACTGTAAGCATTA-----------AATAGCC..............................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................................C-----------------AGCT--TCC--------------------TGTATGCGCCTT-..........................................2011.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAATTTGTTAAATA-CCCCGCGAA..........2611.00100000000000001000
..........................................................................................................................................................................................................................................................................................................................................TCCCCATCC-----------------AGCT--TCC--------------------TGTATGCGCCTT-..........................................2811.00100010000000000000
..................................................................................................................................................................................................................GTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GACTC..................................................................................................................2711.00100000000000001000
..............................................................................................................................................................................................................ATATGTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-G.................................................................................................................................................2511.00100000000010000000
...............................................................................................................ATCGCGCGCA-AGACGTG.......................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
............................................................................................................................................................................................................................................................TACGA-----------------T---------------CCC-GA-------------------------GACTCCT-TTCCCCATCC-----------------....................................................................................2811.00100000010000000000
........................T-T-----CTTTTGGTTTACTAC--T-TTGTA................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000001000000000
.......................TT-T-----CTTTTGGTTTACTAC--T-TTGTA................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000100000000
....................................................................................................................................................................................CTGCAAGCTA---CCCAAT-................................................................................................................................................................................................................................................1620.50100000000001000000
...........................................................................................................................GACGTGA--A-TTTCTTTA-.........................................................................................................................................................................................................................................................................................................1680.50400000011200000000
...........................................................................................................................GACGTGA--A-TTTCTTT...........................................................................................................................................................................................................................................................................................................1580.25200000000002000000
............................................................................................................................ACGTGA--A-TTTCTTTA-.........................................................................................................................................................................................................................................................................................................1580.25200000000002000000
....................................................................................................................GCGCA-AGACGTGA--A-G.................................................................................................................................................................................................................................................................................................................1550.20100000000001000000
droSec2
AGCACTTGTC--GC-GTCGTCGTTT-T-----CTTTTGGTTTACTAC--T-TTGTATAAACTGTAAGCATTA-----------AATAGCCT--A--CACGTGCATGCCTAAATCGCGCGCA-AAACGTGA--A-TTTCTTTA-AAATAC-----TA-------------AAACTA--AAGCTGCAAGCTA---CCCAAT-TTTTGTATATGTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GACTCCT-TTCCCCATCC-----------------AGCT--TCC--------------------TGTATGCGCCTT-TAAATTGCAAATTTGTTAAATA-CCCCGCGAAATGC---ATTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................T--TCC--------------------TGTATGCGCCTT-TAAATTGC..................................2412.0022000
.......................................................................................................................................................................................................................................................................................................A-------------------------GACTCCT-TTCCCCATCC-----------------AGCT--TCC--------------------T......................................................2612.0020020
..................................................................................................................................................................................................................................................................................T---------------CCC-GA-------------------------GACTCCT-TTCCCCATCC-----------------AGC.................................................................................2612.0021100
......................................................................................................CATGCCTAAATCGCGCGCA-AAACGT........................................................................................................................................................................................................................................................................................................................2512.0020020
.................................................................................................................CGCGCGCA-AAACGTGA--A-TTTCTTTA-AAA......................................................................................................................................................................................................................................................................................................2811.0011000
......................................GTTTACTAC--T-TTGTATAAACTGTAAGCA...................................................................................................................................................................................................................................................................................................................................................................................2811.0011000
.................................................T-TTGTATAAACTGTAAGC....................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTAAATA-CCCCGCGAAATGC---...2311.0010010
.......................................................................................................................................................................................................................................................................................................................................T-TTCCCCATCC-----------------AGCT--TCC--------------------TGTATGCGCCT............................................2911.0011000
....................................................................................................................................................................................................................A--AG--------------------------CAAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GACTCC.................................................................................................................2611.0011000
...................................................TTGTATAAACTGTAAGCATTA-----------AATAGCC..............................................................................................................................................................................................................................................................................................................................................................2811.0011000
....................................................................................................................................................................................................................................................AAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GACTCCT-...............................................................................................................2311.0010010
.......................................................................................................................................................................................................................................................................................................................................T-TTCCCCATCC-----------------AGCT--TCC--------------------TGTATGCGCC.............................................2811.0011000
...............................................................................................................................................................................................................................................................................................................................................ATCC-----------------AGCT--TCC--------------------TGTATGCGC..............................................2011.0010010
.............................................................TGTAAGCATTA-----------AATAGCCT--A--CACGTGC.................................................................................................................................................................................................................................................................................................................................................2711.0010100
...............................................................................................................................................................................................................................................................................................................................................ATCC-----------------AGCT--TCC--------------------TGTATGCGCCTT-TAAAT.....................................2811.0011000
....................................................................................................................................................................................................................................................................................................................................TCCT-TTCCCCATCC-----------------AGCT--TCC--------------------TGTATGC................................................2811.0011000
......................................................................................................................GCA-AAACGTGA--A-TTTCTTTA-AA.......................................................................................................................................................................................................................................................................................................2211.0010010
.....................................................................TTA-----------AATAGCCT--A--CACGTGCATGCCTAA.........................................................................................................................................................................................................................................................................................................................................2711.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTAAATA-CCCCGCGAAATGC---A..2511.0011000
..............................................................GTAAGCATTA-----------AATAGCCT--...........................................................................................................................................................................................................................................................................................................................................................1811.0010010
................................................................................................................................................AATAC-----TA-------------AAACTA--AAGCTGCAAGCTA---CA.....................................................................................................................................................................................................................................................2811.0011000
..................................................................................................................................................................................................................................................................................T---------------CCC-GA-------------------------GACTCCT-TTCCCCATCC-----------------AGCT--T.............................................................................2811.0011000
...........................................................................................................................................................................................................................................................................................................................................CCCCATCC-----------------AGCT--TCC--------------------TGTATGCGCCTT-..........................................2711.0011000
.........................................................................................................................................................................................................................................................G--TACGA-----------------T---------------CCC-GA-------------------------GACTCCT-TTCCCC.........................................................................................................2511.0010100
.....................................................................................................................................................................................................................................................AA-AG--TACGA-----------------T---------------CCC-GA-------------------------GACT...................................................................................................................1911.0010010
..................................................................................................................................................................................................................................................................................T---------------CCC-GA-------------------------GACTCCT-TTCCCCATCC-----------------AGCT--TC............................................................................2911.0010001
.........C--GC-GTCGTCGTTT-T-----CTTTTGGT................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
.........C--GC-GTCGTCGTTT-T-----CTTTTGG.................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
....................................................................ATTA-----------AATAGCCT--A--CACGTGCAT...............................................................................................................................................................................................................................................................................................................................................2211.0011000
.......................................................................................................................................................................................................................................................................................................................................................................T--TCC--------------------TGTATGCGCCTT-TAAATTGCAAATT.............................2911.0011000
..................................................................................................................................................................................................................................................................................................CCC-GA-------------------------GACTCCT-TTCCCCATCC-----------------AGCT--..............................................................................2611.0010001
............................................TAC--T-TTGTATAAACTGTAAGCATTA-----------AA...................................................................................................................................................................................................................................................................................................................................................................2711.0011000
.............................................................................................A--CACGTGCATGCCTAAATCGC....................................................................................................................................................................................................................................................................................................................................2111.0010010
.....................................................................................................................................................................................TGCAAGCTA---CCCAAT-TTTTGTATATGTA--.................................................................................................................................................................................................................................2811.0011000
...........................................................................................................................................................................................................TGTATATGTA--AG--------------------------CAAA-AG--TAC.........................................................................................................................................................................................2111.0010100
....................................................................................................................................................................................CTGCAAGCTA---CCCAAT-TTTTGT..........................................................................................................................................................................................................................................2211.0010010
........................................................................................................................................................................................................TTTTGTATATGTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CC....................................................................................................................................................2911.0011000
........................................................................................................TGCCTAAATCGCGCGCA-AAACGTGA--....................................................................................................................................................................................................................................................................................................................2511.0011000
......TGTC--GC-GTCGTCGTTT-T-----CTTTTGGT................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
............................................................................................................................................................................................................................................................TACGA-----------------T---------------CCC-GA-------------------------GACTCCT-TTCCCC.........................................................................................................2411.0010010
......................................................................................................................GCA-AAACGTGA--A-TTTCTTTA-A........................................................................................................................................................................................................................................................................................................2111.0010010
...........................................................................................................................................................................................................TGTATATGTA--AG--------------------------CAAA-AG--TACGA-----------------T---------------CC....................................................................................................................................................2611.0011000
......................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTGTTAAATA-CCCCGCGAAATGC---...2711.0011000
dm3
AGCACTTGTC--GCAGTCGTCGTTT-T-----CTTTTGGTTTACTA---TTTTGTATAAACTGTAAGCATTA-----------AATAGCCT--A--CACGTACATGCCTAAATCGCGCGCA-ATACGTGA--A-TTTCTTTA-AAATAC-----TA-------------AAACTA--AAGCTGCAAGCTA---CCCAAT-TTTTGTATTTGTA--AG--------------------------CGAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GAATCCT-TTCCCCATCC-----------------ATCT--TCC--------------------TGTATGCGCCTT-TAAATTGCAAATTTGTTAAATA-CCCTGCAAAATGC---ATTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................T---------------CCC-GA-------------------------GAATCCT-TTCCCCATCC-----------------ATC.................................................................................26115.00150000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000050001310000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000
....................................................................................................TACATGCCTAAATCGCGCGCA-ATACGT........................................................................................................................................................................................................................................................................................................................27110.00100000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000500000
........TC--GCAGTCGTCGTTT-T-----CTTTTGGTT...............................................................................................................................................................................................................................................................................................................................................................................................................2518.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000020100010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000200000
......................................................................................................CATGCCTAAATCGCGCGCA-ATACGT........................................................................................................................................................................................................................................................................................................................2518.0080000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000001000000000000000110000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................TATTTGTA--AG--------------------------CGAA-AG--TACGA-----------------T---------------CCC-GA-------------------------.......................................................................................................................2717.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000020200000
............................................................................................................................................TA-AAATAC-----TA-------------AAACTA--AAGCTGCAAGC............................................................................................................................................................................................................................................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000201110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.............................................................................................................................................................................TA--AAGCTGCAAGCTA---CCCAAT-TTT.............................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................CTAAATCGCGCGCA-ATACGTGA--....................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AGCACTTGTC--GCAGTCGTCGTTT-T-----........................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................A-------------------------GAATCCT-TTCCCCATCC-----------------ATCT--TCC--------------------.......................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................TACGTGA--A-TTTCTTTA-AAATAC-----TA-------------A..............................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................TGTA--AG--------------------------CGAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GA.....................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TC--GCAGTCGTCGTTT-T-----CTTTTGGTTTAC............................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AGTCGTCGTTT-T-----CTTTTGGTTTA.............................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................ATCC-----------------ATCT--TCC--------------------TGTATGCGCCTT-T.........................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................ACATGCCTAAATCGCGCGCA-..............................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................GAATCCT-TTCCCCATCC-----------------ATCT--TCC--------------------TGTA...................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CTTGTC--GCAGTCGTCGTTT-T-----C.......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................AATAC-----TA-------------AAACTA--AAGCTGCAAGCTA---CCC....................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................CT-TTCCCCATCC-----------------ATCT--TCC--------------------TGTATG.................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................T--A--CACGTACATGCCTAAATCGCGCGCA-..............................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................AAGCTA---CCCAAT-TTTTGTATTTGTA--AG--------------------------C....................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................AG--------------------------CGAA-AG--TACGA-----------------T---------------CCC-GA-------------------------G......................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................................................................TTA-----------AATAGCCT--A--CACGTACATGCCTAAA........................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................GAATCCT-TTCCCCATCC-----------------ATCT--TCC--------------------T......................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................GCAAGCTA---CCCAAT-TTTTGTATTTGTA--.................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................TA--AAGCTGCAAGCTA---CCC....................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................CCC-GA-------------------------GAATCCT-TTCCCCATCC-----------------ATC.................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................................................................................................................................................................................................................................................T-TTCCCCATCC-----------------ATCT--TCC--------------------TGT....................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................A---TTTTGTATAAACTGTAAGCATTA-----------AAT..................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................CC-GA-------------------------GAATCCT-TTCCCCATCC-----------------ATCT--TC............................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TTGTC--GCAGTCGTCGTTT-T-----CTTTTGGTT...............................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................CCCATCC-----------------ATCT--TCC--------------------TGTATGCGCCTA-..........................................2611.0010000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................ATTTGTA--AG--------------------------CGAA-AG--TACG........................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................GCCTT-TAAATTGCAAATTTGTT.........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................CCTAAATCGCGCGCA-ATACGTGA--....................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................AA-AG--TACGA-----------------T---------------CCC-GA-------------------------GAATCCT-TT.............................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................TA-------------AAACTA--AAGCTGCAAGCTA---CCCAA..................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TCGTCGTTT-T-----CTTTTGGTTTACT...........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TACGTGA--A-TTTCTTTA-AAATAC-----TA-------------AAACT..........................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TC--GCAGTCGTCGTTT-T-----CTTTTGGTTTA.............................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................CGAA-AG--TACGA-----------------T---------------CCC-GA-------------------------GAATCCT-...............................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.................................................TTTTGTATAAACTGTAAGCATTA-----------.....................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....................................................................................................................GCGCA-ATACGTGA--A-TTTCTT............................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TGCAAGCTA---CCCAAT-TTTTGTATTTGTA--.................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TTGTC--GCAGTCGTCGTTT-T-----CTTTTG..................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................TTGTA--AG--------------------------CGAA-AG--TACGA-----------------T---------------CCC-GA-------------------------G......................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................CA-ATACGTGA--A-TTTCTTTA-AAATAC-----T.............................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................CT--TCC--------------------TGTATGCGCCTT-TAAATTGC..................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
..........................................................................................................................................................................AACTA--AAGCTGCAAGCTA---CCCA...................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................TGTA--AG--------------------------CGAA-AG--TACGA-----------------......................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................TA-------------AAACTA--AAGCTGCAAGCTA---CCCAAT-................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................CTAAATCGCGCGCA-ATACGTGA--A-TT................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GTC--GCAGTCGTCGTTT-T-----CTTTTGGTTTAC............................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................ACATGCCTAAATCGCGCGCA-ATACGT........................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
............................................................................................................................................................................CTA--AAGCTGCAAGCTA---CCCAA..................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................C-GA-------------------------GAATCCT-TTCCCCATCC-----------------ATCT--T.............................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................GCATTA-----------AATAGCCT--A--CACGTACAT...............................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................AGCATTA-----------AATAGCCT--A--CAC.....................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................ACATGCCTAAATCGCGCGCA-ATACGTG.......................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TACTA---TTTTGTATAAACTGTAAGC....................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TGTATGCGCCTT-TAAATTGCAAATTTG...........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................TCCCCATCC-----------------ATCT--TCC--------------------TGTATGC................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGTTAAATA-CCCTGCA............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................TAAGCATTA-----------AATAGCCT--A--CACGTACATGCC............................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TGTC--GCAGTCGTCGTTT-T-----CTTTTGGAAA..............................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TACATGCCTAAATCGCGCGCA-ATACGTG.......................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................ATGCGCCTT-TAAATTGCAAATTTGT..........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................TTA-----------AATAGCCT--A--CACGTACATGCC............................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAATTTGTTAAATA-C..................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................TA--AAGCTGCAAGCTA---CCCA...................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................CC-GA-------------------------GAATCCT-TTCCCCATCC-----------------ATCT--TCC--------------------.......................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................TCGCGCGCA-ATACGTGA--A-TTTCTTTA-AAA......................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TAGCCT--A--CACGTACATGCCTA..........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TGGTTTACTA---TTTTGTATAAACTGTAAGCA...................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................GCTGCAAGCTA---CCCAAT-TTTTGT..........................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TCC--------------------TGTATGCGCCTT-TAAAT.....................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........TC--GCAGTCGTCGTTT-T-----CTTTTGG.................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................AG--TACGA-----------------T---------------CCC-GA-------------------------GAATCCT-TTCCCCATC......................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................TCT--TCC--------------------TGTATGCGCCTT-TAAATT....................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................GA-------------------------GAATCCT-TTCCCCATCC-----------------ATCT--TCC--------------------.......................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................TCCT-TTCCCCATCC-----------------ATCT--TCC--------------------TG.....................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................TA---CCCAAT-TTTTGTATTTGTA--AG--------------------------CGAA-AG--............................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TT-TAAATTGCAAATTTGTTAAATA-CCC................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................ATCGCGCGCA-ATACGTGA--....................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CTTTTGGTTTACTA---TTTTGTATAAACT..........................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................TTTTGTATAAACTGTAAGCATTA-----------AATA.................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................A-------------AAACTA--AAGCTGCAAGCTA---CCC....................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................CCATCC-----------------ATCT--TCC--------------------TGTATGCGCCTT-..........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................ATAGCCT--A--CACGTACATGCCTAAATCG.....................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................TGTA--AG--------------------------CGAA-AG--TACGA-----------------T---------------CCC-GA-------------------------.......................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................TAC-----TA-------------AAACTA--AAGCTGCAAGCTA---CC.....................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................TTTTGTATTTGTA--AG--------------------------CGAA-AG--............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
...................................................TTGTATAAACTGTAAGCATTA-----------.....................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......................TTT-T-----CTTTTGGTTTACTA---TTTTGTATA..............................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................CT--A--CACGTACATGCCTAAATCGCGCA.................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AGCATTTGTC--GCCGTCGTCGTTT-T-----ATTTTGGTTTACTAC--T-TTGTATAAACTGTAAGCATTA-----------AATAGCGT--A--CACGTACATGCCTAAATCGCGCTCA-AGACGTGA--A-TTATTTTA--AATAC-----TA-------------AAACTA--AAGCTGCAAGCTA---CCCAAC-TTTTGTATTTGTA--TG--------------------------CGAA-AG--CACGA-----------------T---------------CCC-AA-------------------------AACTCCCCCTCCCAATCC-----------------AGCT--TCC--------------------TGTATGCGCCTT-TAAATTGCAAATTTGTTACATA-CCCTGCAAAATAC---AATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................TCCCAATCC-----------------AGCT--TCC--------------------TGTATGCGCC.............................................2612.0022000000
.................................................................................................................................................................................................................................................................................................................................................CC-----------------AGCT--TCC--------------------TGTATGCGCCTT-TAAAT.....................................2612.0020000002
...........................................................................................................CTAAATCGCGCTCA-AGACGT........................................................................................................................................................................................................................................................................................................................2011.0010100000
................................................................................................................................................................................................................................................................A-----------------T---------------CCC-AA-------------------------AACTCCCCCTCCCAATCC-----------------AG..................................................................................2711.0011000000
............................................................................................................TAAATCGCGCTCA-AGACGTGA--....................................................................................................................................................................................................................................................................................................................2111.0010100000
........................................................................................................................................................................................................................................................AG--CACGA-----------------T---------------CCC-AA-------------------------AACTCCCCCTCCCA.........................................................................................................2711.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAATTTGTTACATA-CCC................2211.0010100000
...................................................................................................................................................AC-----TA-------------AAACTA--AAGCTGCAAGCTA---CCC....................................................................................................................................................................................................................................................2611.0010100000
.....................................................................................................ACATGCCTAAATCGCGCTCA-AGAC..........................................................................................................................................................................................................................................................................................................................2411.0010001000
.....................................................................................TAGCGT--A--CACGTACATGCCTAAATCG.....................................................................................................................................................................................................................................................................................................................................2611.0011000000
..........................................................................................................................................................TA-------------AAACTA--AAGCTGCAAGC............................................................................................................................................................................................................................................................1911.0011000000
...................................................................................AATAGCGT--A--CACGTACATGCCT...........................................................................................................................................................................................................................................................................................................................................2211.0010100000
...................................................................................................GTACATGCCTAAATCGCGCTCA-AGACGT........................................................................................................................................................................................................................................................................................................................2811.0010000100
.......................................................................................................................CA-AGACGTGA--A-TTATTTTA--AA......................................................................................................................................................................................................................................................................................................2111.0011000000
..........................T-----ATTTTGGTTTACTAC--T-TTGTA................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................TGTATGCGCCTT-TAAATTGCAAATTTGT..........................2811.0011000000
..........................................................................................................CCTAAATCGCGCTCA-AGACGTG.......................................................................................................................................................................................................................................................................................................................2211.0010001000
...................................................................................................................................................................................................................................................................................................................................CTCCCCCTCCCAATCC-----------------AGCT--TCC--------------------TGTA...................................................2711.0011000000
....................................................................................................TACATGCCTAAATCGCGCTCA-AGAC..........................................................................................................................................................................................................................................................................................................................2511.0011000000
..............................................................................................................................................................................................................ATTTGTA--TG--------------------------CGAA-AG--CACGA-----------------T---------------CCC-..................................................................................................................................................2411.0010100000
..................................................................................................................................................................................................................................................................................T---------------CCC-AA-------------------------AACTCCCCCTCCCAATCC-----------------AGC.................................................................................2711.0011000000
.........................................................................................GT--A--CACGTACATGCCTAAATCGC....................................................................................................................................................................................................................................................................................................................................2311.0010100000
.............................................AC--T-TTGTATAAACTGTAAGC....................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
...........................................................................................................................................................................ACTA--AAGCTGCAAGCTA---CCCAAC-T...............................................................................................................................................................................................................................................2411.0011000000
...................................................................................................................................................................................................................TA--TG--------------------------CGAA-AG--CACGA-----------------T---------------CCC-AA-------------------------AAC....................................................................................................................2411.0011000000
..................................................................................................................................................TAC-----TA-------------AAACTA--AAGCTGCAAGCTA---CC.....................................................................................................................................................................................................................................................2611.0011000000
.........................................................................................................GCCTAAATCGCGCTCA-AGACGT........................................................................................................................................................................................................................................................................................................................2211.0010001000
................................................................................................CACGTACATGCCTAAATCGCGCTCA-AG............................................................................................................................................................................................................................................................................................................................2711.0011000000
..........................................................................................T--A--CACGTACATGCCTAAATCGCGCT.................................................................................................................................................................................................................................................................................................................................2511.0011000000
....................................................................................................................................................................................................................................................................................................................................TCCCCCTCCCAATCC-----------------AGCT--TCC--------------------.......................................................2211.0011000000
..........................................................................................................................................TTTA--AATAC-----TA-------------AAACTA--AAGCTGCAAGC............................................................................................................................................................................................................................................................2811.0011000000
......................................................................................................................................TTATTTTA--AATAC-----TA-------------AAACTA--AAGC...................................................................................................................................................................................................................................................................2511.0010100000
......................................................................................AGCGT--A--CACGTACATGCCTA..........................................................................................................................................................................................................................................................................................................................................2011.0010001000
.......GTC--GCCGTCGTCGTTT-T-----ATTTTGGT................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
....................................................................................................................................................................................................................................................................................................C-AA-------------------------AACTCCCCCTCCCAATCC-----------------AGCT--TCC--------------------.......................................................2811.0011000000
......................................................................................................................................................................................................................................................................................................................................................................CT--TCC--------------------TGTATGCGCCTT-TAA.......................................2011.0010100000
......................................................................................................CATGCCTAAATCGCGCTCA-AGAC..........................................................................................................................................................................................................................................................................................................................2311.0010000100
........................................................................................................................................................................................................................G--------------------------CGAA-AG--CACGA-----------------T---------------CCC-AA-------------------------AACTCCCCC..............................................................................................................2711.0011000000
................................................................................................................................................................................................................................................................................................................................................TCC-----------------AGCT--TCC--------------------TGTATGCGCCTT-TAAAT.....................................2711.0011000000
droYak3
AGCATTTGTC--GCCGTCGTCGTTT-T-----ATTTTGGTTTACTAC--T-TTGTATAAACTGTAAGCATTA-----------AATAGCAT--A--CACATACATGCCTAAATCGCGCTCA-AGACGTGA--A-TT-TTTTA--CATAC-----TA-------------AAACTA--AAGCTGCAAGCTA---CCCAAT-TTTTGTATTTGTA--TG--------------------------CGAA-AG--CACTA-----------------T---------------CCC-AA-------------------------AACTCC----CCCCATCC-----------------AGCT--TCC--------------------TGTATGCGCCTT-TAAATTGCAAATTTGTTACATA-CCCTGCAAAATAC---AATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................A--TG--------------------------CGAA-AG--CACTA-----------------T---------------CCC-AA-------------------------AAC....................................................................................................................2311.00100100000000
.......................................................................................................ATGCCTAAATCGCGCTCA-AGACGT........................................................................................................................................................................................................................................................................................................................2411.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................TT-TAAATTGCAAATTTGTTACATA-CCCT...............2811.00101000000000
.........................................................................................................................................................................AAACTA--AAGCTGCAAGCTA---CCC....................................................................................................................................................................................................................................................2211.00100100000000
..........................................................................................................CCTAAATCGCGCTCA-AGACGT........................................................................................................................................................................................................................................................................................................................2111.00100000010000
............................................................CTGTAAGCATTA-----------AATAGCAT--A--........................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
....................................................................................................................................................................................................................A--TG--------------------------CGAA-AG--CACTA-----------------T---------------CCC-AA-------------------------.......................................................................................................................2011.00101000000000
..................................................................................................................GCGCTCA-AGACGTGA--A-TT-...............................................................................................................................................................................................................................................................................................................1811.00100100000000
..................................................................................................................................................................................................................................................................................................CCC-AA-------------------------AACTCC----CCCCATCC-----------------AGCT--TCC--------------------TGC....................................................2911.00100100000000
................................................................................................................................................................................................................................................................A-----------------T---------------CCC-AA-------------------------AACTCC----CCCCATCC-----------------AGCT--..............................................................................2511.00101000000000
....................................................................................................................................................C-----TA-------------AAACTA--AAGCTGCAAG.............................................................................................................................................................................................................................................................1911.00100100000000
.........................................................AAACTGTAAGCATTA-----------AATAGCAT--A--C.......................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
........................T-T-----ATTTTGGTTTACTAC--T-TTGT.................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000
.........................................................................................................................................................................................................TTTGTATTTGTA--TG--------------------------CGAA-AG--CACTA-----------------T---------------CC....................................................................................................................................................2811.00101000000000
.....................................................................................................ACATGCCTAAATCGCGCTCA-AGA...........................................................................................................................................................................................................................................................................................................................2311.00100010000000
.......................TT-T-----ATTTTGGTTTACTAC--T-TTGT.................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000
.GCATTTGTC--GCCGTCGTCGTC................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...................................................................................................................................................AC-----TA-------------AAACTA--AAGCTGCAAGCT...........................................................................................................................................................................................................................................................2211.00100010000000
..........................................................................................T--A--CACATACATGCCTAAATCGC....................................................................................................................................................................................................................................................................................................................................2211.00100100000000
.................................................................................................................................................................................................................TGTA--TG--------------------------CGAA-AG--CACTA-----------------T---------------CCC-..................................................................................................................................................2111.00101000000000
.....................................................................................................................................................................................TGCAAGCTA---CCCAAT-TTTTGT..........................................................................................................................................................................................................................................2111.00101000000000
.....................................................................................................ACATGCCTAAATCGCGCTCA-AGACGT........................................................................................................................................................................................................................................................................................................................2611.00100100000000
AGCATTTGTC--GCCGTCGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000
droEug1
AGAATTAGT--------CGTCGTTT-A-----ACTTTGGTTTACTAT--TTTTGTATAAACTGTAGGCATAA-----------AAAAGCGT-----CACGTACATGCCTAAATCGCGCGCA-AGACGTGA--A-TT-TTTTA---ATAC-----TA-----------A-AAACTAAAAAGCTGCAAGCTA---CCCCAT-TTTTGTATTTGTACAAG--------------------------CAAA-AG--CTAGA-----------------A---------------CCC-AA-------------------------TCCTCCT-T-ACCCATTC-----------------AACT--TCC--------------------TGTATGCGCCTT-CAAATTGCAAATTTGTTAAATA-CCCTGCAAAATAC---AATSizeHit CountTotal NormTotal
No Reads
droBia1
AGCATTAGAA--GCCGTCGTCGTTT-T-----A--TTGGTTTACTAC--TTTTGTACAAACTGTAAGCATTA-----------AATTCCGT--A--CGCGTTTATGCCTAAATCGCGCACG-AGACGTGA--CAT-TTTTTA---AAAC-----TA-------------AAACTA--AAGCTGCAAGCTA---CCCCAT-TTTTGTATTTGTACACG--------------------------CGAA-AG--CAAG------------------T---------------CCG-AA-------------------------CCCTCCT-C-CCCCATTC-----------------AGCT--TCC--------------------TGTATGCGCCTT-CAAATTTCAAATTTGTTAAAAC-CCCTGCAAAATAC---TATSizeHit CountTotal NormTotal
No Reads
droTak1
AGCATTGGTC--GCCGTCGTCGTTT-T------TATTGGTTTACTAC--TTTTGTATAAACTGTAAGCATTA-----------AATAGCGT--A--CACATACATGCCTAAATCGCGCGCC-AGACGTGA--CAT-TTTTTA---ATAC-----TA-------------AAACTA--AAGCTGCAAGCTA---CCCCAT-TTTTGTATTTGTACAAG--------------------------CGAA-AG--CAAGT-----------------T---------------CCC-AA-------------------------CCCTCCT-C-CCCCATTC-----------------AGCT--TCC--------------------TGTATGCGCCTT-CAAATTGCAAATTTGTTAG-TA-CCCAGCAAGATAC---AATSizeHit CountTotal NormTotal
No Reads
droEle1
AGCATTAGTT--GCCGTCGTCGTTT-T-----ATTTTGGTTTACTAC--TTTTGTATAAACTGTAAGCATTA-----------AATAGCGT--A--CACGTACATGCCTAAATCGCGCGCA-AGACGTGA--A-CTTTTTTT--AATAC-----TA-------------AAACTA--AAGCTGCAAGCTA---CCCAATTTTTTGTATTTGTACAAT--------------------------CGAAAAG--CAAAG-----------------T---------------CCCCGA-------------------------CCCTTCT-C-ACCCATTC-----------------AGCT--TCC--------------------TGTATGCGCCTT-CAAATTGCAAATTTGTTAAATA-CCCTGCAA-ATAC---AATSizeHit CountTotal NormTotal
No Reads
droRho1
AAGATTAGTT--GCCGTCGTCGTTT-T-----ATTTTGGTTTAATAC--TTTTGTATAAACTGTAAGCATTA-----------AATAGCGT--A--CACGTACATGCCTAAATCGCGCGGA-AGACGTGA--AAT-TTTTTA---ATAC-----TA-------------AAACTA--AAGCTGCAAGCTA---CCCAAT-TTTTGTATTTGTACAAG--------------------------CGAAAAG--CAAAA-----------------T---------------CCCCGA-------------------------TCCCCCT-T-ACCCATTC-----------------AGCT--TCC--------------------TGTATGCGCCTT-CAAATTGCAAATTTGTTAAATA-CCCTGCAA-ATAC---AATSizeHit CountTotal NormTotal
No Reads
droFic1
AGCATTAGTC--GCCGTCGTCGTTT-T-----AATTTGGTTTACTAC--TTTTGTATAAACTGTAAGCATCA-----------AATAGCGT--A--CACGTACATGCCTAAATCGCGCGCA-AGTCGTGA--CAT--TTTTA---ATAC-----TA-------------AAACTA--AAGCTGCAAGCTA---CCCAATTTTTTGTATTTGTACAAG--------------------------CGAG-GA--AATGT-----------------T---------------CCC-AG---------------------CAACCACTCCT-T-CCCCATCC-----------------AGCC--TCC--------------------TGTATGCGCCTTTTAAATTGCAAATTTGTTAGATA-CCCCACAAAA-AC---AATSizeHit CountTotal NormTotal
No Reads
droKik1
AGC------------------GATT-TATTTACCTTTGGTTTACTACCTTTTTGTATAAACTGTAAGCATTA------AATTAAATAGCGT--ACACACAAACATGCCTAAATCGCGCGTAGAGTCGTGACAA-TT-TTTTA-------------A-------------AAACTA--AAGCTGCAAGCTAA--ACCAAT-TTTTGTATTTGTACAAG--------------------------CGAAAA-----AG------------------G---------------CCC-AA-------------------------CCCTCCT-TCCCCCATTC-----------------AGCT--TCCC--T----------------TGTA-GCGCCTT-CAAATTGCAAATTTGTTAATTA-TTCTGCAAAATAGTGGAATSizeHit CountTotal NormTotal
No Reads
droAna3
AGGATTAGTC--GCCGCCATCGGTA-T-----ACTTTCGTTTATTAC--TTTTGTATAAAATGTAAGAGTTA-----------CATGCCCCAAACACACACACATGCCTA-----------------------------------------------------------AAACTA--CAGCTGCAAGCTAGCCCCCATT-TTTTGTAATCATAGAAG--------------------------TGAAAAG--CAAGAA--------GC------T---------------GCC-----AGGCTCCGCCGAGAGGATCCAGTTGCTCCT-T-TCCCATTC-----------------GACT--TCCC-------------------TGTATGCGCCTTTTAAATTGCAAATTTGTTAGATG-TCCCGCAA-ATAC---AATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................AATGTAAGAGTTA-----------CATGCCCC.............................................................................................................................................................................................................................................................................................................................................................2112.002020000
..................................................................................................................................................................................................................................................................................................................................GCTCCT-T-TCCCATTC-----------------GACT--TCCC-------------------.......................................................2311.001100000
..........................................................................................................................................................................................................................................................................GC------T---------------GCC-----AGGCTCCGCCGAGAGG..............................................................................................................................2211.001100000
..............................................................................................CACACACACATGCCTA-----------------------------------------------------------AAAC...........................................................................................................................................................................................................................................................................2011.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAATTTGTTAGATG-TCCCGC.............2511.001010000
........................................................................................................................................................................................................................................................AG--CAAGAA--------GC------T---------------GCC-----AGGCTC........................................................................................................................................2011.001010000
......................................................................................................................................................................................................................................................AAAG--CAAGAA--------GC------T---------------GCC-----AGGC..........................................................................................................................................2011.001010000
.................................................................................................................................................................................................................................................................A--------GC------T---------------GCC-----AGGCTCCGCCGAGAGG..............................................................................................................................2311.001010000
.....................................................................................................................................................................................................TT-TTTTGTAATCATAGAAG--------------------------T....................................................................................................................................................................................................2011.001000010
...............................................................................................................................................................................................................ATCATAGAAG--------------------------TGAAAAG--CAAGAA--------GC------......................................................................................................................................................................2511.001010000
.......................................................................................CCCCAAACACACACACATGC.............................................................................................................................................................................................................................................................................................................................................2011.001010000
..........................................................................................CAAACACACACACATGCCTA-----------------------------------------------------------AAACTA--C......................................................................................................................................................................................................................................................................2711.001010000
.........................................................................................................................................................................................................................................................G--CAAGAA--------GC------T---------------GCC-----AGGCTCC.......................................................................................................................................2011.001001000
....................................................................................................................................................................................................................................................GAAAAG--CAAGAA--------GC------T---------------GCC-----AGG...........................................................................................................................................2111.001010000
.................................................................................................................................................................................................................CATAGAAG--------------------------TGAAAAG--CAAGT.......................................................................................................................................................................................2011.001010000
........................A-T-----ACTTTCGTTTATTAC--TTTTGC.................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
..................................................................................................................................................................................................................ATAGAAG--------------------------TGAAAAG--CAAGAA--------GC------......................................................................................................................................................................2211.001010000
.......GTC--GCCGCCATCGGTA-T-----ACT.....................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
.................................CTTTCGTTTATTAC--TTTTGT.................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
......................................................................TA-----------CATGCCCCAAACACACACACATGC.............................................................................................................................................................................................................................................................................................................................................2611.001010000
............................................................................................................................................................................................................................................................................................................GCTCCGCCGAGAGGATCCAGTTGCTCCT-...............................................................................................................2811.001000001
...............................................................................................................................................................................................................................................................................................................CCGCCGAGAGGATCCAGTTGCTC..................................................................................................................2311.001100000
......................................................................................GCCCCAAACACACACACATGCCT...........................................................................................................................................................................................................................................................................................................................................2311.001010000
droBip1
AACATTGGTA--GCCGCCATCGGTA-TACAT-ACTTTCGTTTATTAC--TTTTGTATAAAATATAAGAATAA-----------CACGCCCA--A--CACATGCAGGCCTA-ACCGCGCTCA-AGTCGCGA--A-TTTTTTTA--AGAAC-----T--------------AAACTA--CAGCTGCAAGCTA---CCC--T-TTTTGTATTCGTAGAAG--------------------------TGAGACG--CAAGC-----------------T---------------GCC-----AGGCTCCGCCGC--GGATCCAGCCGCTCCC-T-TCCCATTC-----------------GGCT--TCC--------------------TGTACGCGCCTT-TAAATTGCAAATTTGTTAGATG-TCCCGCAA-ACAC---ATTSizeHit CountTotal NormTotal
No Reads
dp5
AGAAAAAGTCGAGCCGCCGTCGTTTTT-----ATTTTGGTCTATTAC--TTTTGTATAAACTGTAAGCATTA-----------TATAACGT--A--CACGTACATGCCTAAATCACGCGCA-AGTCGTGA--CAT-TTTTTA--AAAAC-----TA-----------AAGAACTA-AAAGCTGCAAGCTA---CCCAAT-TTTTATATTTATACAAG--------------------------CGAAAAG--TAAGAA--------ATA--T-AT---------------CCG-AACCGGTCTCCGCCAC--GGTTCCCCATCCC--------CCATTCCCAT-------------AGAT-TTCCCCTT----------------TGTATGAGCCTT-TGAATTGCAAATTTGTTAAATAGTCCCGCAAAATCG---TTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................A--CAT-TTTTTA--AAAAC-----TA-----------AAGAA............................................................................................................................................................................................................................................................................2211.0010010000000
..........................................................................................................................................................................................................................................................................................................................................................................TCCCCTT----------------TGTATGAGCCTT-TGAAT.....................................2421.0020000000200
.................................................................................................................................................................................................................................................................................AT---------------CCG-AACCGGTCTCCGCCAC--GGT.............................................................................................................................2421.0020100100000
........................................................................................................................................................................................................................G--------------------------CGAAAAG--TAAGAA--------ATA--T-A......................................................................................................................................................................1920.5010100000000
............................................................................................................................................................................................................ATATTTATACAAG--------------------------CGAAAAG--T...........................................................................................................................................................................................2120.5010100000000
............................................................................................................................................................................................................................................................................A--T-AT---------------CCG-AACCGGTCTCCGCCAC--GGT.............................................................................................................................2620.5010010000000
.................................................................................................................................................................................................................................................................................AT---------------CCG-AACCGGTCTCCGCCAC--G...............................................................................................................................2220.5010100000000
................................................................................................................................................................................AAAGCTGCAAGCTA---CCCAAT-................................................................................................................................................................................................................................................2020.5010100000000
.........................................................................................................................................................................................................................................................................................................................................................................TTCCCCTT----------------TGTATGAGCCT............................................1920.5010010000000
..........................................................................................................CCTAAATCACGCGCA-AGTCGTGA--CA..................................................................................................................................................................................................................................................................................................................2520.5010100000000
.....AAGTCGAGCCGCCGTCGTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................TATGAGCCTT-TGAATTGCAAATT.............................2320.5010000000100
............................................................................................................................................TA--AAAAC-----TA-----------AAGAACTA-AAAGCTG.................................................................................................................................................................................................................................................................2420.5010000000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................TGTTAAATAGTCCCGCAAAATCG---TT.2520.5010100000000
................................................................................................................................................................................AAAGCTGCAAGCTA---CCCAA..................................................................................................................................................................................................................................................1920.5010010000000
......................................................................................................................................................................................................................................................................................................................................................................AT-TTCCCCTT----------------TGTATGAGCCT............................................2120.5010010000000
.......................................................................................................................................................................................................................AG--------------------------CGAAAAG--TAAGAA--------ATA--T-AT---------------CCG-AACC..............................................................................................................................................2820.5010010000000
......................................................................TA-----------TATAACGT--A--CACGTACATGCCTAAAT.......................................................................................................................................................................................................................................................................................................................................2820.5010100000000
............................................................................................................................................TA--AAAAC-----TA-----------AAGAACTA-AAAGC...................................................................................................................................................................................................................................................................2220.5010000000100
.............................................................................................................................................................................TA-AAAGCTGCAAGCTA---CCC....................................................................................................................................................................................................................................................1920.5010010000000
.........................................................................................................................................................................GAACTA-AAAGCTGCAAGCT...........................................................................................................................................................................................................................................................1920.5010100000000
.....................GTTTTT-----ATTTTGGTCTATTAC--TTTTGC.................................................................................................................................................................................................................................................................................................................................................................................................2720.5010010000000
.....................................................................................................ACATGCCTAAATCACGCGCA-AGTCGT........................................................................................................................................................................................................................................................................................................................2620.5010000100000
....................................................................ATTA-----------TATAACGT--A--CACGTACATGC.............................................................................................................................................................................................................................................................................................................................................2420.5010010000000
....................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCCTT-TGAATTGCA.................................1820.5010000100000
.....................................................................................................................................................................................................................................................................................................................................................................GAT-TTCCCCTT----------------TGTATGAGCCTT-..........................................2320.5010100000000
..........................................................................................T--A--CACGTACATGCCTAAATC......................................................................................................................................................................................................................................................................................................................................2020.5010001000000
...................................................................................................................................................AC-----TA-----------AAGAACTA-AAAGCTGCAAG.............................................................................................................................................................................................................................................................2320.5010100000000
.......................................................................................................................................................................AAGAACTA-AAAGCTGCAAGC............................................................................................................................................................................................................................................................2020.5010100000000
..........................................................................................................................................................................AACTA-AAAGCTGCAAGCTA---CCCA...................................................................................................................................................................................................................................................2320.5010010000000
.................................................................................................................................................................................................................................................................A--------ATA--T-AT---------------CCG-AACCGGTCTCCGCCAC--................................................................................................................................2620.5010010000000
..........................................................................................................................................................................AACTA-AAAGCTGCAAGCTA---CCC....................................................................................................................................................................................................................................................2220.5010010000000
.....................................................................................................................................................................................................................................................................................................................................................................GAT-TTCCCCTT----------------TGTATGAGC..............................................2020.5010010000000
...........................................................................................................................................TTA--AAAAC-----TA-----------AAGAACTA-AAAGCTG.................................................................................................................................................................................................................................................................2520.5010000000010
..........................................................................................................................................TTTA--AAAAC-----TA-----------AAGAACTA-AAAGCTG.................................................................................................................................................................................................................................................................2620.5010100000000
.....AAGTCGAGCCGCCGTCGTTTTT-----........................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010100000000
.........................................................................................................................................TTTTA--AAAAC-----TA-----------AAGAACTA-AAAG....................................................................................................................................................................................................................................................................2420.5010000000010
........................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTTAAATAGTCCCGCAAAAT........2420.5010000100000
.................................................................................................................................................................................................................................................................................................................................................................................................TGTATGAGCCTT-TGAATTGCAAATT.............................2520.5010100000000
....................................................................ATTA-----------TATAACGT--A--CACGTACA................................................................................................................................................................................................................................................................................................................................................2120.5010010000000
............................................................................................................................................................................................................................................................................A--T-AT---------------CCG-AACCGGTCTCCGCCAC--G...............................................................................................................................2420.5010000100000
........................TTT-----ATTTTGGTCTATTAC--TTTTGTATA..............................................................................................................................................................................................................................................................................................................................................................................................2720.5010010000000
......................................................................................................................................................................................................................................................................................................................................................T-------------AGAT-TTCCCCTT----------------TGTATGAGCCTT-..........................................2520.5010100000000
.....................................................................................TAACGT--A--CACGTACATGCCTAAATC......................................................................................................................................................................................................................................................................................................................................2520.5010001000000
......................................................................................AACGT--A--CACGTACATGCCTAAATC......................................................................................................................................................................................................................................................................................................................................2420.5010001000000
...........................................................................................................CTAAATCACGCGCA-AGTCGTG.......................................................................................................................................................................................................................................................................................................................2120.5010100000000
................................................................................................CACGTACATGCCTAAATCACGCGCA-..............................................................................................................................................................................................................................................................................................................................2520.5010000100000
droPer2
AGAATAAGTCGAGCCGCCGTCGTTTTT-----ATTTTGGTCTATTAC--TTTTGTATAAACTGTAAGCATTA-----------TATAACGT--A--CACGTACATGCCTAAATCACGCGCA-AGTCGTGA--CAT-TTTTTA--AAAAC-----TA-----------AAGAACTA-AAAGCTGCAAGCTA---CCCAAT-TTTTATATTTATACAAG--------------------------CGAAAAG--TAAGAA--------ATA--T-AT---------------CCG-AACCGGTCTCCGCCAC--GGTTCCCCATCCC--------CCATTCCCAT-------------AGAT-TTCCCCTT----------------TGTATGAGCCTT-TGAATTGCAAATTTGTTAAATAGTCCCGCAAAATCG---TTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................TGCCTAAATCACGCGCA-AGTCGT........................................................................................................................................................................................................................................................................................................................2318.008701000
.GAATAAGTCGAGCCGCCGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003300000
......................................................................................................CATGCCTAAATCACGCGCA-AGTCGT........................................................................................................................................................................................................................................................................................................................2513.003300000
........................................................................................................TGCCTAAATCACGCGCA-AGTCGTGA--C...................................................................................................................................................................................................................................................................................................................2613.003300000
..............................................C--TTTTGTATAAACTGTAAGC....................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
.GAATAAGTCGAGCCGCCGTCGTT................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002200000
..............CGCCGTCGTTTTT-----ATTTTGGTC...............................................................................................................................................................................................................................................................................................................................................................................................................2212.002200000
............................................................................................................................................................................................................................................................................................................................................................................CCCTT----------------TGTATGAGCCTT-TGAATTGCA.................................2612.002200000
.......................TTTT-----ATTTTGGTCTATTAC--TT.....................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..............CGCCGTCGTTTTT-----ATTTTGGT................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.....................................................................................................................................................................................................................................................................................................................................................AT-------------AGAT-TTCCCCTT----------------TGTATGAGCCT............................................2511.001100000
.................................................TTTTGTATAAACTGTAAGCATTA-----------TATA.................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..........................................................................................................................................................TA-----------AAGAACTA-AAAGCTGCAAGCTA---CC.....................................................................................................................................................................................................................................................2611.001100000
.......................................................................A-----------TATAACGT--A--CACGTACATGCCTAAATCA.....................................................................................................................................................................................................................................................................................................................................2911.001010000
........................TTT-----ATTTTGGTCTATTAC--TTTTGT.................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000
..............CGCCGTCGTTTTT-----ATTTTGGTCT..............................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..............................................................................................................................................................................................................................................................................................................................................................................CTT----------------TGTATGAGCCTT-TGAATTGC..................................2311.001010000
...............................................................................................................................................................................................................................................................................................................................................................................TT----------------TGTATGAGCCTT-TGAATTGCAAATT.............................2711.001100000
........................................................................................................................A-AGTCGTGA--CAT-TTTTTA--AA......................................................................................................................................................................................................................................................................................................2011.001100000
.........................................................................................................................................TTTTA--AAAAC-----TA-----------AAGAACT..........................................................................................................................................................................................................................................................................1911.001100000
.....................................................................................................................CGCA-AGTCGTGA--CAT-TTTTTA--AA......................................................................................................................................................................................................................................................................................................2311.001100000
..............................................C--TTTTGTATAAACTGTAAGCATT.................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
............................................................................................................TAAATCACGCGCA-AGTCGT........................................................................................................................................................................................................................................................................................................................1911.001010000
................................ATTTTGGTCTATTAC--TTTTGT.................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
.......................................................................................................ATGCCTAAATCACGCGCA-AGTCGT........................................................................................................................................................................................................................................................................................................................2411.001100000
................................................................................................................................................................................................................................................................................................................................................................................T----------------TGTATGAGCCTT-TGAATTGCAA................................2311.001100000
.........................................................................................................................................................................................................................................................G--TAAGAA--------ATA--T-AT---------------CCG-AACC..............................................................................................................................................2011.001100000
......................................................................................................................GCA-AGTCGTGA--CAT-TTTTTA--AA......................................................................................................................................................................................................................................................................................................2211.001100000
..........................................................................................................................................................................................................................................................................................................................................................................TCCCCTT----------------TGTATGAGCCTT-TGAATTGCAA................................2911.001100000
.................................................................................................................................................................................................................................................................................AT---------------CCG-AACCGGTCTCCGCC....................................................................................................................................1911.001010000
................................................................................................................................................................................................................................................................................................................................................................................T----------------TGTATGAGCCTT-TGAATTGCAAATTT............................2711.001010000
......................................................................................................................GCA-AGTCGTGA--CAT-TTTTTA--........................................................................................................................................................................................................................................................................................................2011.001100000
................................................................................................................................GA--CAT-TTTTTA--AAAAC-----TA-----------AAGAACT..........................................................................................................................................................................................................................................................................2511.001100000
.........................................................................................................................................................................................................................................................................................................................................................................TTCCCCTT----------------TGTATGAGCCT............................................1911.001001000
.GAATAAGTCGAGCCGCCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
............................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAATAGTCCCGCAAAAT........2011.001010000
droVir3
AAAA---GCA--GCAGACGTCGATT-T-----AT--TAGT---------------------TGTAAACATTT-----------A----------------AGCATCATTATATAGTGCGAG-AGTCGTGA--A-TT-TTTTAAAC------------------------AAACTACAAAGCTGCAAGCTG---AACAAT-TTTTATATTTATACAAAACAAAACAAACAAAAAAAAAAAAAAACGAAAAA--CAAAAACAACAAACACAAATGATAAGCGATAAATAATTGCC-AA-------------------------TTCCTCA-A-ATATGTT------------------------TTGCTTC--------------------TCTGCCTT-TGA------AATATGT-------------------------TSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................ATCATTATATAGTGCGAG-AGTCGTGA--....................................................................................................................................................................................................................................................................................................................2613.003001000000000000000000000000000000000000000000000000000000000020
..............................................................................................................TATAGTGCGAG-AGTCGTGA--A-TT-TTT............................................................................................................................................................................................................................................................................................................2513.003000001000000000000000001001000000000000000000000000000000000000
.......................................................................................................ATCATTATATAGTGCGAG-A.............................................................................................................................................................................................................................................................................................................................1913.003000000000000000000000000000003000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TCCTCA-A-ATATGTT------------------------TTGCTTC--------------------TCTGCC.............................................2713.003003000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................T------------------------TTGCTTC--------------------TCTGCCTT-TGA------AATATGT-------------------------.2612.002000000000000000000000000001000010000000000000000000000000000000
............................................................................................................TATATAGTGCGAG-AGTCGTGA--A-TT-TTT............................................................................................................................................................................................................................................................................................................2712.002000000000000000000000000101000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................TAATTGCC-AA-------------------------TTCCTCA-A-ATATGTT------------------------T.............................................................................2612.002000000000000000000000000001010000000000000000000000000000000000
.......................................................................................................ATCATTATATAGTGCGAG-AGTCGTGA--A-T.................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................TAAATAATTGCC-AA-------------------------TTCCTCA-A-ATATGT.......................................................................................................2811.001000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................TCA-A-ATATGTT------------------------TTGCTTC--------------------TCTGCCTT-T.........................................2711.001000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................TATGTT------------------------TTGCTTC--------------------TCTGCCTT-TGA------AA...............................2611.001000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................ATATAGTGCGAG-AGTCGT........................................................................................................................................................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
.........................................................................................................CATTATATAGTGCGAG-AGTCGTGA--A-T.................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
......................ATT-T-----AT--TAGT---------------------TGTAAACATTT-----------A----------------AGC.................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................ATCATTATATAGTGCGAG-AGTCGT........................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................ATCATTATATAGTGCGAG-AGTCGTG.......................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................AACACAAATGATAAGCGATAAATAAT.......................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................ATATAGTGCGAG-AGTCGTGA--A-TT-TT.............................................................................................................................................................................................................................................................................................................2511.001000000000100000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TGATAAGCGATAAATAATTGCC-AA-------------------------T......................................................................................................................2511.001000000000000000000000000100000000000000000000000000000000000000
...............GACGTCGATT-T-----AT--TAGT---------------------TGTA.......................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................TATAGTGCGAG-AGTCGTGA--A-TT-TTTT...........................................................................................................................................................................................................................................................................................................2611.001000000100000000000000000000000000000000000000000000000000000000
..............AGACGTCGATT-T-----AT--TAGT---------------------TGTAAAC....................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................ATAATTGCC-AA-------------------------TTCCTCA-A-ATATGT.......................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................TAAAC------------------------AAACTACAAAGCTGCAAGCTG---AA.....................................................................................................................................................................................................................................................2811.001000000000000000000000000001000000000000000000000000000000000000
..................GTCGATT-T-----AT--TAGT---------------------TGTAAACA...................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000100
...............................................................................................................ATAGTGCGAG-AGTCGTGA--A-TT-TTT............................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................AAACGAAAAA--CAAAAACAACAAAC..............................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................ACAACAAACACAAATGATAAGC.................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................GCTG---AACAAT-TTTTATATT.......................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.............CAGACGTCGATT-T-----AT--TAGT---------------------TGTAAACATT.................................................................................................................................................................................................................................................................................................................................................................................2911.001000010000000000000000000000000000000000000000000000000000000000
......................................................................................................CATCATTATATAGTGCGAG-A.............................................................................................................................................................................................................................................................................................................................2011.001000000000000000000100000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................CAACAAACACAAATGATAAGC.................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................CAAACACAAATGATAAGCGATA.............................................................................................................................................................2211.001000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................ATATAGTGCGAG-AGTCGTGA--A-TT-TTT............................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
.................CGTCGATT-T-----AT--TAGT---------------------TGTAAACA...................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................ATAGTGCGAG-AGTCGTGA--A-TT-...............................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................AAATGATAAGCGATAAATAAT.......................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TGATAAGCGATAAATAATTGCC-AA-------------------------TTC....................................................................................................................2711.001000000100000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................CCTCA-A-ATATGTT------------------------TTGCTTC--------------------TCTGCCT............................................2711.001000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................TGCTTC--------------------TCTGCCTT-TGA------AATATGT-------------------------T2511.001000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................ATATGTT------------------------TTGCTTC--------------------TCTGCCT............................................2111.001100000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................GCTGCAAGCTG---AACAAT-T...............................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................AATGATAAGCGATAAATAATTGCC-A.................................................................................................................................................2511.001000000000000000010000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................TGCC-AA-------------------------TTCCTCA-A-ATATGTT------------------------TTGCT.........................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................CAAACACAAATGATAAGCGATAAAT..........................................................................................................................................................2511.001000000000000000000000000000000100000000000000000000000000000000
................................................................................................................TAGTGCGAG-AGTCGTGA--A-TT-TTTTAAA........................................................................................................................................................................................................................................................................................................2711.001000000000010000000000000000000000000000000000000000000000000000
............GCAGACGTCGATT-T-----AT--TAGT---------------------...........................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000100000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................T------------------------TTGCTTC--------------------TCTGCCTT-TGA------AATATGT-------------------------C2711.001000010000000000000000000000000000000000000000000000000000000000
............................................................................................................TATATAGTGCGAG-AGTCGTGA--A-TT-TT.............................................................................................................................................................................................................................................................................................................2611.001000000000000001000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TGCAAGCTG---AACAAT-TTTTATATTTAT....................................................................................................................................................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TTGCTTC--------------------TCTGCCTT-TGA------AATATGT-------------------------.2511.001000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................C-AA-------------------------TTCCTCA-A-ATATGTT------------------------TTGCT.........................................................................2311.001000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................TGA--A-TT-TTTTAAAC------------------------AAACTACAAAGC...................................................................................................................................................................................................................................................................2611.001000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................AAAACAACAAACACAAATGATAAGCGAT..............................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000010
AAAA---GCA--GCAGACGTCGAT................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000001000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TGCAAGCTG---AACAAT-TTTTATATTTA.....................................................................................................................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................TGCC-AA-------------------------TTCCTCA-A-ATATGTT------------------------TTGCTT........................................................................2711.001000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................AGCTGCAAGCTG---AACAAT-TTTTAT..........................................................................................................................................................................................................................................2411.001100000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................TTAAAC------------------------AAACTACAAAGCT..................................................................................................................................................................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
..............AGACGTCGATT-T-----AT--TAGT---------------------TGTAAA.....................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
.........A--GCAGACGTCGATT-T-----AT--TA..................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.........A--GCAGACGTCGATT-T-----AT--TAGT---------------------T..........................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
............GCAGACGTCGATT-T-----AT--TAGT---------------------T..........................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................TTGCC-AA-------------------------TTCCTCA-A-ATATGTT------------------------TTGCTC........................................................................2811.001000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................TATAGTGCGAG-AGTCGTGA--A-TT-T..............................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................TCA-A-ATATGTT------------------------TTGCTTC--------------------TCTGCCT............................................2511.001000000000000000000000000000010000000000000000000000000000000000
...............................................................TAAACATTT-----------A----------------AGCATCATTATATAGTGC..................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................GCTTC--------------------TCTGCCTT-TGA------AATATGT-------------------------.2311.001000000000000001000000000000000000000000000000000000000000000000
..................................................................................................................GTGCGAG-AGTCGTGA--A-TT-TTTTAAA........................................................................................................................................................................................................................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TC--------------------TCTGCCTT-TGA------AATATGT-------------------------T2111.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................TGCGAG-AGTCGTGA--A-TT-TTTTAAAC------------------------AA.............................................................................................................................................................................................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................TTGCC-AA-------------------------TTCCTCA-A-ATATGTT------------------------T.............................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
........................T-T-----AT--TAGT---------------------TGTAAACATTT-----------A----------------AGCATC..............................................................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
.AAA---GCA--GCAGACGTCGATT-T-----AT--TAGT---------------------T..........................................................................................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................ATAGTGCGAG-AGTCGTGA--A-TT-T..............................................................................................................................................................................................................................................................................................................2211.001000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................CA-A-ATATGTT------------------------TTGCTTC--------------------TCT................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................T-----------A----------------AGCATCATTATATAGTGCGAG-AGTCG.........................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................AAACAAAACAAACAAAAAAAAAA..........................................................................................................................................................................................................2390.111001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................AAACAAAAAAAAAAAAAAA.....................................................................................................................................................................................................19200.102000000000000000002000000000000000000000000000000000000000000000
droMoj3
AGCA--------GCAGACATCGCTT-T-----AT--TAAC--------------------TTGTAAACTTTT-----------AAGAAAAC--A-----------------------------TTCGTGA--A-TT-TTTTA---AAACACAACCAGAAGAAGAATGAAGAACTAAAGAGCTGCAAGCTA---AACAAT-TTTTATATTTATACAAA--------------------------CAAAAAGATTAAGAA--------ACAAAATATAAGCATTAAATAGTTGCC-AA------------------T------TCCTCAG-C-TCCCACTTAAAAAAAAAAGGAAACAATTTTTTTG---CTCTAGTTTTGAAATTATGTAAATGGCTTTT----------TTTGT----TA-TACTACGAAGTAC---ACTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................GA--A-TT-TTTTA---AAACACAACCAGA..........................................................................................................................................................................................................................................................................................2311.001100000
.....................................................................................................................................................................TGAAGAACTAAAGAGCTGCAAGCTA---A......................................................................................................................................................................................................................................................2611.001100000
....................................................................................................................................................................................................................................................................................................................................................................ATTTTTTTG---CTCTAGTTTTGAAATT........................................................2511.001100000
.........................................................................................................................................................................................................................................................GATTAAGAA--------ACAAAATATAAGC.................................................................................................................................................................2211.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................CTTTT----------TTTGT----TA-TACTACGA...........2011.001100000
..........................................................................................................................................................................................................................................................................................................................................................................TTG---CTCTAGTTTTGAAATT........................................................1911.001100000
............................................................................................................................................................GAAGAAGAATGAAGAACTAAAG......................................................................................................................................................................................................................................................................2211.001100000
.........................................................................................................................................................................................................................................................................................................................................................................TTTG---CTCTAGTTTTGAAATTA.......................................................2111.001100000
.GCA--------GCAGACATCGCTT-T-----AT--....................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.......................................................................................................................................................................................................................................................................................................................................................................TTTTTG---CTCTAGTTTTGAAATTATGTA...................................................2711.001100000
........................................................................................AAC--A-----------------------------TTCGTGA--A-TT-TTTTA---AAACA..................................................................................................................................................................................................................................................................................................2411.001100000
.......................................................................................................................................................................................................................................................AAGATTAAGAA--------ACAAAATATAAGC.................................................................................................................................................................2411.001100000
.....................GCTT-T-----AT--TAAC--------------------TTGTAAACTTTT-----------AAGAA................................................................................................................................................................................................................................................................................................................................................................2811.001100000
......................................................................................................................................................................GAAGAACTAAAGAGCTGCA...............................................................................................................................................................................................................................................................1911.001000001
.................................................................................................................................................................................................................................................................................................................................................................................TCTAGTTTTGAAATTATGTA...................................................2011.001100000
....................................................................................................................................................................ATGAAGAACTAAAGAGCTGCAAG.............................................................................................................................................................................................................................................................2311.001100000
......................................................................................................................................................CAACCAGAAGAAGAATGAAGAAC...........................................................................................................................................................................................................................................................................2311.001000010
.........................................................................................................................................................................GAACTAAAGAGCTGCAAGCT...........................................................................................................................................................................................................................................................2011.001100000
......................................................................................................................................................................GAAGAACTAAAGAGCTGCAAGCT...........................................................................................................................................................................................................................................................2311.001000001
...........................................................................................................................................................................................................................................................................................AATAGTTGCC-AA------------------T------TCCTCAG-C-.............................................................................................................2111.001000010
................................AT--TAAC--------------------TTGTAAACTTTT-----------AAGAA................................................................................................................................................................................................................................................................................................................................................................2311.001100000
................................................................................................................................................................AAGAATGAAGAACTAAAGAGCTGC................................................................................................................................................................................................................................................................2411.001000001
droGri2
T----------------TGTCGGTT-T-----AT----------TTA--C-TTGTA---ACTCT------TAAGGCATCATTAAATAG-----------------------------GGCG-AGTCGTGA--A-TT-TTAAA---AAAAGCAACAA-----------AAGAACTA-AAAGCTGCAAGCTT---AACAAT-TTTTATATTTATACGA------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAC---AA-SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................................................................................G-----------------------------GGCG-AGTCGTGA--A-TT-TTA............................................................................................................................................................................................................................................................................................................1911.00101

Generated: 05/18/2015 at 06:18 PM