ID:

dsi_24680

 Coordinate:

2r:15514966-15515169 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-85.3 -85.3 -85.2

Flybase annnotation

exon [2r_15514245_15515720_+]; CDS [2r_15514245_15515592_+]

Repeatable elements

NameClassFamilyStrand
(CCCCAG)nSimple_repeatSimple_repeat+
mature
  1. dsi_24680  2r:15514968-15514988 +
star

Sense Strand Reads

################################################################################################################################################################################################################################################################################################################
AGGTCCAGGTCCAGGCCCAGGCTCAGGCTCAGGCCCAGGCCCAGGCCCAGGTTCAGGCTCAGGCTCAGGCTCAGGCTCAGGTCCAGGCTCAGGTCCAGGCTCAGGTCCAGGCTCAGGCCCAGGTTCAGGTTCAGGATCAGGCCCAAGTTCAGGATCAGGCCCAGGATCAGCTCCAGGGTCAGGCCCAGGCCCAGGCCCCGGCTCAGGCCCAGGCCCAGGTCCCGGCTCAGGCCCAGGCCCAGGTCCCGGCTCAGGTCCAGCAGTCATCAGCTCAGTCTGCCCAGCTACTCCTCCCTGAGCTAAC
**************************************************.....((((..((((..((((..(((((.((....((((..(((((.((((..(((((.((((..((((..(((((.......))))).))))..))))..))))).))))..))))))))))).))))).))))..))))..))))((((....((((..((((..((((........))))..))))..)))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
....................................................TCAGGCTCAGGCTCAGGCTCA....................................................................................................................................................................................................................................... 21 0 2 0.50 1 1
..........................................................TCAGGCTCAGGCTCAGGCTCA................................................................................................................................................................................................................................. 21 0 2 0.50 1 1

Anti-sense strand reads

TCCAGGTCCAGGTCCGGGTCCGAGTCCGAGTCCGGGTCCGGGTCCGGGTCCAAGTCCGAGTCCGAGTCCGAGTCCGAGTCCAGGTCCGAGTCCAGGTCCGAGTCCAGGTCCGAGTCCGGGTCCAAGTCCAAGTCCTAGTCCGGGTTCAAGTCCTAGTCCGGGTCCTAGTCGAGGTCCCAGTCCGGGTCCGGGTCCGGGGCCGAGTCCGGGTCCGGGTCCAGGGCCGAGTCCGGGTCCGGGTCCAGGGCCGAGTCCAGGTCGTCAGTAGTCGAGTCAGACGGGTCGATGAGGAGGGACTCGATTG
**************************************************.....((((..((((..((((..(((((.((....((((..(((((.((((..(((((.((((..((((..(((((.......))))).))))..))))..))))).))))..))))))))))).))))).))))..))))..))))((((....((((..((((..((((........))))..))))..)))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
..................................................................................................................................................................................................................................................CAGAGCCGAATCCAGGTC............................................ 18 2 2 1.00 2 2 0 0 0 0 0
................................................................................................................................................................................................................................................TCCCGGGCCGAGCCCAGGTC............................................ 20 2 1 1.00 1 0 0 1 0 0 0
................................................................................................................................................................................................................................................................................................AGGAGGGACTCGATCG 16 1 1 1.00 1 0 1 0 0 0 0
........................................................GGAGTCCGAGTCCGAGTCCGAGTC................................................................................................................................................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................................TCCAAGTCCATGTCCTAGA..................................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................AGTCAAACGGGTCCATGAGGTG........... 22 3 2 0.50 1 0 0 0 1 0 0
................................................................................................................................................................................................................GGTCCGGCTCCAGTGCCGCG............................................................................ 20 3 3 0.33 1 0 1 0 0 0 0
........................................................................................................................................................................................................................................GGTCCGGCTCCAGTGCCGCG.................................................... 20 3 3 0.33 1 0 1 0 0 0 0
..............................................................................................................................................................................................................................................GGTGCAGGGCCGAGCCC................................................. 17 2 5 0.20 1 0 0 1 0 0 0
......................................................................................................................................................................................................................GGTGCAGGGCCGAGCCC......................................................................... 17 2 5 0.20 1 0 0 1 0 0 0
..........................................................................................................................................................................................TCCGGCTCTGGGGCCGAGGC.................................................................................................. 20 3 8 0.13 1 1 0 0 0 0 0
......................................................................................................................................................................................................................GGTGCAGGGCCCAGTCC......................................................................... 17 2 9 0.11 1 0 0 0 1 0 0
..............................................................................................................................................................................................................................................GGTGCAGGGCCCAGTCC................................................. 17 2 9 0.11 1 0 0 0 1 0 0
..............................................................................................................................................................................................................................................GGTGCAGGGCCGAGCCCC................................................ 18 3 20 0.05 1 0 0 1 0 0 0
........................................................................................................................................................................................................................................GGTCCGGGGCCAAGGC........................................................ 16 2 20 0.05 1 0 0 0 0 0 1
...................................................................................................................................................................................................................CCGGATCCAGGGCTGATT........................................................................... 18 3 20 0.05 1 0 0 0 0 1 0
..............................................................................................................................................................................................GGTCCGGGGCCAAGGC.................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 1
.......................................................................................................................................................................................................................................................ACGAGTTCAGGTCGTCA........................................ 17 2 20 0.05 1 0 0 1 0 0 0
...........................................................................................................................................................................................................................................CCGGATCCAGGGCTGATT................................................... 18 3 20 0.05 1 0 0 0 0 1 0
......................................................................................................................................................................................................................GGTGCAGGGCCGAGCCCC........................................................................ 18 3 20 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:15514916-15515219 + dsi_24680 AG----GTCCAGG-TCC------AGGCCCAGGCTCAGGCTCAGGCCCAGGCCCAGGCCCAGGTTCAGGCTCAGGCTCAGGCTCAGGCTCAGGTCCAGGCTCAGGTCC------------------AGGCTCAGGTC------------------------------------C------------AGGCTCAGGCCCAGGT---------------------------------------------------------------TCAG----------------------------------------------------------------------------------GTTCAGGATCAGGCCCAAGTTCAGGATCAGGCCCAG-------------------------------------------------------------------------------------------------------------------------------------------------GATCAGCTCCAGGGTC------AGGCCCAGGC-CCAGGCCCCGGCTCAGGCCCAGGCCCAGGTCCCGGCTCAGGCCCAG---------------GCCCAGGT---------------------------------CCCG----GC-----------------------TCAGGTCCAGCAGTCATCAGCTCAGTCTGCCCAGCTACTCCTCCCTGA----------------------------------------------------------------------------------------------------------------------------------------GCTA----AC
droSec2 scaffold_1:12372228-12372532 + AG----GCCCAGGCCCC------AGGCCCAGGCCCAGGCCCAGGCCCAGGCCCAGACCCAGACCCAGACCCAGACCCAGACCCATACCCAGACCCAGGCCCAGGCCC------------------AGGCCCAGGCC------------------------------------C------------AGGTCCAGGCCCAGGT---------------------------------------------------------------CCAG----------------------------------------------------------------------------------GCCCAGGTTCAGGTCCAGGCTCAGGACCAGGTTCAG-------------------------------------------------------------------------------------------------------------------------------------------------GATCAGCTCCAGGGTC------AGGCCCAGGC-CCAGGTCCCGGCTCAGGCCCAGGCCCAGGTCCCGGCTCAGGCCCAG---------------GCCCAGGT---------------------------------CCCG----GC-----------------------TCAGGTCCAGCAGTCATCAGCTCAGTCCGCCCAGCTACTCCTCCCTGA----------------------------------------------------------------------------------------------------------------------------------------GCTA----AC
dm3 chr2R:14866123-14866389 + AG----GCTCAGG-TCC------AGGCACAGGCTCAGGCCCAGGCCCAGACTCAGGCTCAGACTCAGGCCCAGGCTCTGGCTCAGGCCCAGGCTCAGGCCCAGGTCC------------------AGGCACAGCCACAGGCTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTCCAGCAGGCAGCAGCTCAGCCTGCCCAGCTGCTCCTCCCTCAGCTAACGCAGGCGGTGATCCAGACTCAGCAACGAGCGGTTCACCAACCCCAGCAGTCGGGACAGCAATCAGGACCTCAGCATGCCTCATCGAC---CGCCGCC-----------------------------------TT-GGCTA
droEre2 scaffold_4845:19817866-19818138 + GG-----CACAGG-CGC------AGGCACACGCACACGCACATGCT---------------------------------------GCCCAGGTACAGGCCCAAGCTC------------------AAGCCCAGGCC------------------------------------G------------TGGTCCAAGCTCAGGTGCAAGCCGCCCAAGTGGCACACGCTGTGGCAGCACAGCAGCAGGCGGTA------------CA-------------------------------------------------------GCAGCAACAGGCGGCACAGCAGCA------------------------GCAGCAAGCCGCGGTGCAA----------------------------------------------------------------------------------------------------------------C---------------------------------AGCAGGCAGCGGTGC------------AGCA-GCAGCAACAG---------------------------------------------------CAACAGGCGGCGGT---------GCAGCAACAGCAG---------------------------------------------------GCAGCG------------------------------------CAGCAGCAGGTCA------AGCAACTGGAGGAACT------------------------------------------------G-----------------------------------------------------AA
droYak3 X:19876624-19876908 + AG----CCACAGC-TCC------AGCCTCAGTCACAGCTTCAGCCTCAGTCACAGCCACAGCTTCAGCCTCAGCCACAGTCTCCGGCTTTTCCTCAGTCTTGTCCAC------------------AGCCATAGCCACAGTCTCGACCTC------------AGCCACAG----------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCCACAGCCACAGTCTCGACCTCAGCCGCAGTAGCCGCTGTAGCCTCAGTCACAG----------------------------------------------------------------------------------------------------------------C---------------------------------CTCAGCCACAGTCGC------AGCCTCAGCC-ACAGTCACAGCCTCAGCCACAGTCACAGCCTCAGCCACAGTCACAGCCTCAGCCACAGTCA------------------------------------------CAG----CC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGCCAC
droEug1 scf7180000409759:228612-228893 + AG----TCTCAGT-CTC------AGTCTCAGTCTCAGTCTCAGTCTCAGTCTCAGTCTCAGTCTCAGTCTCAGTCTCAGTCTCAGTCTCA-----AGTCTCAGTCTCAGTCTC------------AGTCTCAGTCTCAGTCTCAGTCTC------------AGTCTCAGTCTCAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCAGTCTCAGTCTCAGTCTCAGTCTCAGTCTCAGTCTCAGTCTCAG----------------------------------------------------------------------------------------------------------------T---------------------------------CTCAGTCTCAGTCTC------AGTCTCAGTC-TCAGTCTCAGTCTCAGTCTCAGTCTCAGTCTCAGTCTCAGTCTCAGTCTCAGTCTCAGTTT------------------------------------------CAG----TC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGTC-T
droBia1 scf7180000301468:913003-913259 + TG----GTCCAGG-CCC------AGGTGCAGGCCGTCCAAGTGGCCCACGCTGTGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCCAGCAGCAGGCGGTG------------CA-------------------------------------------------------GCAGCAGCA------ACAGCAGCA---------GCAGC------------------A-------------------------------------------------------------------------------------------------------------------------------------------------AGCGGCGCAGCAGCAGCAGCAGACGG------TGGCGCAGCA-GCAGCAACAGCAACA------------------------------------------------ACAGGCCGTGGC---------GCAGCAACAGCATG-----------C--------GGCT-----------------------------------------------------------------CAGCAGCAGCAGGTCA------AGCAACTGGAGGAACT------------------------------------------------GAATCGGGCTGTGATGCTCCAGCGCTTTCAGGCTGCCCGGCAGCCGGCAA----AC
droTak1 scf7180000415191:84658-84961 - AG----GCCCAGC-AGC------AGCAGAGGGAGCAGCAACAGCAGGTCGCCCAGGCTCAGGCGCAGCAGCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGCACTCGCCAACGCCACTCA----GCAGATCCTCCAGGTGGCGCCCAACCAGTTCATCACCTCCCACCAGCAGCAG------------------------------CAGCAGCAGCAGC---TCCACAACCA-------------------------------------------------------------------------------------------------------------------------------------------------ACTGATCCAGCAGCAGCTGCAGCAAC------AGGCGCAGGC-GCAGGCACAGGTTCAAGCCCAGGTGCA---------------------------------------GGCCCAGGC---------GCAGCAGCAACAACAGCAGCGG----GAGCAGCAGCAG-----------------------------------------------------------------CAGCAGCAGCAGAACATCATCCAGCAGATTGTGGTGC--------------------------------------------------------------------------------------------------------A
droEle1 scf7180000491011:652921-653226 + GG-----CCCAGT-ACC------AGGCGCAGCAGCAGCAGCAGGCTCAGGCCCAGGCCCAAGCTCAGGCGCAGGCCCAGGCGCAGGCA------CAGGCGCAGGCAC------------------AGGCCCAGGCC------------------------------------C------------A----------------------------------------------------------------------------------GCAGCTAGCC------------------------------------------CAGCAGCAGCTGG------------------CCCAGCACCAGCAGCTGGC------CGC-------------------------------------------------------------------------------------------------------CGCCGTCCAAGTGCATC---------------------------------ACC------------------AGCAGCAGCA-ACAGCAGCAGCA---------------------------------------------------ACAGGCGGTCGTGGCCGTTCAGCAGCAACAGCAGG-----CCGCAGC----AGCGGCGGCTGCGGCGGCGGTCAAGATGCAACT------------------------------------------------------------------------------------------------------------------------------GAC---CGCCGCCACGCC-C---ACCTTCAC---GTTCAGCGCCCTGCCA----AC
droRho1 scf7180000777112:15271-15523 - AG----GCTCGGG-ATT------GAGCTCTGGTTCAGGCACTGGTTCGTGTTCCGGTTCGTGTTCCGGATCGGTTTCAGGCTCGGGTTCAGGTTCAGGTTCAGGTTC------------------AGGTTCAGGCT------------------------------------C------------TGGTTCAGGCTCTGGT---------------------------------------------------------------TCAG----------------------------------------------------------------------------------GCTCGGGCTCAGGCTCAGGCTCTGGTTCAGGCTCTG-------------------------------------------------------------------------------------------------------------------------------------------------GTTCAGGCTCTGGTTC------ATGACAAGGCGTCTGGTTCAGGCTCAGGCTCTGGTTCAGGTTCCGGCTCAGGATCTG---------------GATCAGGC---------------------------------TCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTC
droFic1 scf7180000454078:671952-672211 + AA----GCCCAGG-TGC------AGGCGGCCCAGGTGGCCCACGCTGTGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCCAGCAGCAGGCAGTGGCG---------CA-------------------------------------------------------GCAGCAACAGGCGGCAGTGCAGCA---------GCAGCAACAGCAACAGGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGTGC------------AGCA-GCAGCAACAG---------------------------------------------------CAGCAGGCCGTGGT---------TCAGCAACAACAACAACAGGCG----GCGGTGGCTCAG-----------------------------------------------------------------CAGCAGCAGCAGGTCA------AGCAACTTGAGGAACT------------------------------------------------GAATCGGGCCGTTATGATCCAGCGCTTACAGGCTGCCCGGCAGCCGGCGA----AT
droKik1 scf7180000302476:2954895-2955252 - CC--AAAACCAGG-CCCAGATTCAGGC------TCAGGCGCAGGCCCAGGCTCAGGTTCAAGCTCAGGCTCAGGCACAAGCTCAGGCT------CAGGCTCAAGCAC------------------AGGCTCAGGCC------------------------------------A------------ACATGCAG-----------------------------------------------------------------------------------CG------------------------------------------------------------------------------------------------------------------TATCAACTACGCTTATAGCTATGGCAACTTGTATAACCCTTATGGCGGGGTCACCTCCTCCATGGTAAGCCTCACCAGCTCCAGTCCCTCCTACGCCCAGGCACAGATGCAACAGCAGCAGCAGCAGCAA---GCGCAGCAGCAGCAACAAGTGC------AGGCTCAAGT-CCAGGCCCAGGCTCAGGCC------------------------------------------------GCCTATGC---------CCAACAGGCCTAT-----------GC----AGCCTATG-----------------------------------------------------------------CTGCGGCTGCGGGACT------AGCTCCCCAAGCCAC--------------------------------------------------------------------------------------------------------T
droAna3 scaffold_12916:14486840-14487150 + AA----GCCCAGG-CTC------AAGCTCAAGCTCAAGCTCAGGCTCAAGCTCAGGCTCAAGCTCAGGCTCAAGCTCAGGCTCAAGCTCAGGCTCAAGCTCAAGCTC------------------AGGCTCAAGCTCAGGCTCAAGCTCAGGCTCAAGCTCAGGCTCAAGCTCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCAAGCTCAGGCTCAAGCTCAGGCTCAAGCTCAG----------------------------------------------------------------------------------------------------------------G---------------------------------CTCAAGCTCAAGCTC------AGGCTCAAGC-TCAGGCTCAAGCTCAAGCTCAAGCTCAAGCTCAGGCTCAAGCTCAGGCT--------------------------------------------------------TCAGC----TTCGGCTTCAGCT---------------------------------------------------------------CAA-----------------------------------------------------------------------------------------------GCT-C---AGGCCCAA---GCTCAGGCTCCAGCTCAAGC-T
droBip1 scf7180000396572:2493016-2493319 - AA----GCACAGG-CTC------AAGCTCAAGCACAGGCTCAGGCACAGGCTCAAGCTCAAGCACAGGCTCAAGCTCAAGCACAGGCTCAAACACAGGCTCAGGCACAGACTCAAGCACAGGGTCAGGCTCAGGCG------------CAGGCTCAAGCACAGGCTCAAGCTCAGGCTCAAGCTCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCAAGCACAGGCTCAAGCTCAGGCTCAGGCGCAG----------------------------------------------------------------------------------------------------------------G---------------------------------C------------TC------AAGCTCAGAC-ACAGGCTCAAGCTCAGGCTCAAGCTCAGGCACAGGCTCAAGCTCAGGCACAGGCTCAAGCT------------------------------------------CAG----GC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAG---GCTCAAGCTCAGGCTCAGG--C
dp5 XL_group3a:1834191-1834499 - GG-----CACAGG-CTC------AGGCCCAAGCTCAGGCCCAAGCTCAGGTTCAGGCTCAGCAACAGCAGCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGGCATTGGCG---------CA----GCAGATACTGCAGGTGGCGCCAAACACCTTCATCACCTCCCACCA---------------------ACAGCAGCA------GCAGCAGCAGCAGC---TCCACAACCA-------------------------------------------------------------------------------------------------------------------------------------------------ACTGCTGCAGCAGCAGCTCCAGCAGC------AGGCGCAGGC-CCAAGTGCAAGCTCAGGTTCAGGCTCAGGCACAGGCACAGGCCCAG------------------------------------------CAGCAACAGCAACAGCAACAGC----AGCGGGAG-----------------------------------------------------------------CAGCAGCAGCAGAACATAATCCAACAAATTGTGGTAC--------------------------------------------------------------------------------------------------------A
droPer2 scaffold_4:5078269-5078555 - TG----GCTCACT-CTT------AGGTTCTGGCTCACTCTTCGGCTCTGGCTCACTCTTCGGCTCAGGTTCGCTCTGCGGCTCAGGGACGCTCTTCGGCTCAGGGAT------------------GCTCTTCGGCTCAGGTTCGCTCTT------------AGGTTCACTCTTAGGTTCTGGCTCAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTAGGTTCAGGTTCGCTTTTAGGTTCTGGTTCGC----------------------------------------------------------------------------------------------------------------T---------------------------------CTTCGGCTCGGGCTCACTCTTCGGCTCAGGC-TCACTCTTCGGCTCAGGTTCACTCTTCGGCTCAGGCTCGCTCTTCGGTTCTGGTTCGCTCT------------------------------------------TCG----GC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGGC-T
droWil2 scf2_1100000004943:10293260-10293473 + GGCT--CGGGTTC-TTC------TGGAGCGGGTTCTGGCTCAGGTTCTGG------------CACAGGTTCGGCCTCAGGTTCTGGCT------------------------------------------------------------------------------------C------------AGCTGCGGGCACAGGT---------------------------------------------------------------TCTG----------------------------------------------------------------------------------GCTCAGGTACTGCCTCAGGCTCTGGCTTAGGTTCTGGAACTATTTCCACTA-------------------------------------------------------------------------------------------------------------------------------------------CAGCTTC------TGGTTGAGGT-TCAATTTCTAACTT------------TGTCTCCTGTTCAGGCTCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCAG---GCTCTGCTTCCGGTTC----AG
droVir3 scaffold_13042:764977-765256 + GG----ATCCAAT-TCC------AGCTCCAGTCCCAGTCTTAGTCCCAGTCCTAGTCCTAGTCAAAGCTTTAGTCTCAGTCCCAATCCCAGCTCCAGTCCCAGCTCC------------------AGTCCCAGCTCCAGTCCCAGCTTC------------AGTCCCAGTCCTAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCAGCCCCAGCTCCAGTTTTAGCTCCTGTCCCAACCCCAGTTGCAG----------------------------------------------------------------------------------------------------------------C---------------------------------CCCAGCCACAGTCCC------AGCTCCAGTC-TTAGCTCCAGTCTTAGCTCTAGCCCCAATCCCAGTCCCAGTCCTAGTCCCAGTCCTTGTCC------------------------------------------CTG----TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAGT--C
droMoj3 scaffold_6496:14702555-14702858 + AT----GCTCAGG-CCC------AGGAACAGGCTCAGGCTCAAGCTCATGCGCAACTTCAGGCCCACGCCCAGCTCCAAGCTCACGCCCACCTCCAGGCCCAAGCTCAAGCTC------------AGGCTCAGGCTCAGGCCCAGGCCCAAGCCCAGCTCCAGGCACAGGTTCAGGCCCATGCCCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCAGGCACACGCCCATGCACAGGTTCAGGCCCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------GCCC------AGCTCCAGGC-GCAAGTCCAGGCCCATGCTCATGCCCAGCTCCAGGCGCATGTCCAGGCCCAGGCACACGCA------------------------------------------CAG----GC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAG---GCACATGCTCATGCACAGG--C
droGri2 scaffold_15074:3889875-3890160 - CA---GGTCCAGT-CTC------AGGCTTACCTCCAGATACAGCCCCAGCTCCACCTCCAGGTCCAGCATCAGTTTTAATTCCCGGTCCGACGTCAGTCTTATCTCC------------------AGGTCCAGCACCGGGCTTAACTGC------------GGGTCCAGCACC------------AGGTGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------AACAGGTTTAGCTGCAGGATCAGCACTTGGCTTAACAGCGGGTCCAG-------------------------------------------------------------------------------------------------------------------------------------------------CACCAGCTCTACCACC------AGGTCCAGCC-ACAGCTTTAACTCCCGGTTCAGCACCAGTCTTATCTCCACGTCCAGTACCACGTTTATCTC------------------------------------------CAG----AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAG---C

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AG----GTCCAGG-TCC------AGGCCCAGGCTCAGGCTCAGGCCCAGGCCCAGGCCCAGGTTCAGGCTCAGGCTCAGGCTCAGGCTCAGGTCCAGGCTCAGGTCC------------------AGGCTCAGGTC------------------------------------C------------AGGCTCAGGCCCAGGT---------------------------------------------------------------TCAG----------------------------------------------------------------------------------GTTCAGGATCAGGCCCAAGTTCAGGATCAGGCCCAG-------------------------------------------------------------------------------------------------------------------------------------------------GATCAGCTCCAGGGTC------AGGCCCAGGC-CCAGGCCCCGGCTCAGGCCCAGGCCCAGGTCCCGGCTCAGGCCCAG---------------GCCCAGGT---------------------------------CCCG----GC-----------------------TCAGGTCCAGCAGTCATCAGCTCAGTCTGCCCAGCTACTCCTCCCTGA----------------------------------------------------------------------------------------------------------------------------------------GCTA----ACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................TCAGGCTCAGGCTCAGGCTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100010000000000000
.....................................................................TCAGGCTCAGGCTCAGGCTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100010000000000000
droSec2
AG----GCCCAGGCCCC------AGGCCCAGGCCCAGGCCCAGGCCCAGGCCCAGACCCAGACCCAGACCCAGACCCAGACCCATACCCAGACCCAGGCCCAGGCCC------------------AGGCCCAGGCC------------------------------------C------------AGGTCCAGGCCCAGGT---------------------------------------------------------------CCAG----------------------------------------------------------------------------------GCCCAGGTTCAGGTCCAGGCTCAGGACCAGGTTCAG-------------------------------------------------------------------------------------------------------------------------------------------------GATCAGCTCCAGGGTC------AGGCCCAGGC-CCAGGTCCCGGCTCAGGCCCAGGCCCAGGTCCCGGCTCAGGCCCAG---------------GCCCAGGT---------------------------------CCCG----GC-----------------------TCAGGTCCAGCAGTCATCAGCTCAGTCCGCCCAGCTACTCCTCCCTGA----------------------------------------------------------------------------------------------------------------------------------------GCTA----ACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
AG----GCTCAGG-TCC------AGGCACAGGCTCAGGCCCAGGCCCAGACTCAGGCTCAGACTCAGGCCCAGGCTCTGGCTCAGGCCCAGGCTCAGGCCCAGGTCC------------------AGGCACAGCCACAGGCTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTCCAGCAGGCAGCAGCTCAGCCTGCCCAGCTGCTCCTCCCTCAGCTAACGCAGGCGGTGATCCAGACTCAGCAACGAGCGGTTCACCAACCCCAGCAGTCGGGACAGCAATCAGGACCTCAGCATGCCTCATCGAC---CGCCGCC-----------------------------------TT-GGCTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................GACTCAGGCTCAGACTCAGGCCCAGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TCAGG-TCC------AGGCACAGGCTCAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCCAGACTCAGCAACGAGCGGT...........................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.G----GCTCAGG-TCC------AGGCACAGGCTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCCAGACTCAGCAACGAGCG.............................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCCAGCAGGCAGCAGT.............................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
............................................CCCAGACTCAGGCTCAGACTCAGGCCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCCAGACTCAGCAACGAGCGGTT..........................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CAGGCTCAGGCCCAGGCCCAGACTCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATCCAGACTCAGCAACGAGCGGTT..........................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGCAGGCAGCAGCG............................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGCAGGCGGTGATCTTT............................................................................................................................2090.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GG-----CACAGG-CGC------AGGCACACGCACACGCACATGCT---------------------------------------GCCCAGGTACAGGCCCAAGCTC------------------AAGCCCAGGCC------------------------------------G------------TGGTCCAAGCTCAGGTGCAAGCCGCCCAAGTGGCACACGCTGTGGCAGCACAGCAGCAGGCGGTA------------CA-------------------------------------------------------GCAGCAACAGGCGGCACAGCAGCA------------------------GCAGCAAGCCGCGGTGCAA----------------------------------------------------------------------------------------------------------------C---------------------------------AGCAGGCAGCGGTGC------------AGCA-GCAGCAACAG---------------------------------------------------CAACAGGCGGCGGT---------GCAGCAACAGCAG---------------------------------------------------GCAGCG------------------------------------CAGCAGCAGGTCA------AGCAACTGGAGGAACT------------------------------------------------G-----------------------------------------------------AASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................CAGCAGGCGGTA------------CA-------------------------------------------------------GCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------AGCAACTGGAGGAACT------------------------------------------------........................................................1811.0010000100
.....................................................................................................................................GCC------------------------------------G------------TGGTCCAAGCTCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................CAA----------------------------------------------------------------------------------------------------------------C---------------------------------AGCAGGCAGCGGTGC------------AGCA-.........................................................................................................................................................................................................................................................................................................................................2311.0010000010
...............................................................................................................................................................................................................................................AGCAGGCGGTA------------CA-------------------------------------------------------GCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAG---------------------------------------------------GCAGCG------------------------------------C..........................................................................................................................................1820.5011000000
droYak3
AG----CCACAGC-TCC------AGCCTCAGTCACAGCTTCAGCCTCAGTCACAGCCACAGCTTCAGCCTCAGCCACAGTCTCCGGCTTTTCCTCAGTCTTGTCCAC------------------AGCCATAGCCACAGTCTCGACCTC------------AGCCACAG----------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCCACAGCCACAGTCTCGACCTCAGCCGCAGTAGCCGCTGTAGCCTCAGTCACAG----------------------------------------------------------------------------------------------------------------C---------------------------------CTCAGCCACAGTCGC------AGCCTCAGCC-ACAGTCACAGCCTCAGCCACAGTCACAGCCTCAGCCACAGTCACAGCCTCAGCCACAGTCA------------------------------------------CAG----CC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGCCACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
AG----TCTCAGT-CTC------AGTCTCAGTCTCAGTCTCAGTCTCAGTCTCAGTCTCAGTCTCAGTCTCAGTCTCAGTCTCAGTCTCA-----AGTCTCAGTCTCAGTCTC------------AGTCTCAGTCTCAGTCTCAGTCTC------------AGTCTCAGTCTCAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCAGTCTCAGTCTCAGTCTCAGTCTCAGTCTCAGTCTCAGTCTCAG----------------------------------------------------------------------------------------------------------------T---------------------------------CTCAGTCTCAGTCTC------AGTCTCAGTC-TCAGTCTCAGTCTCAGTCTCAGTCTCAGTCTCAGTCTCAGTCTCAGTCTCAGTCTCAGTTT------------------------------------------CAG----TC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGTC-TSizeHit CountTotal NormTotal
No Reads
droBia1
TG----GTCCAGG-CCC------AGGTGCAGGCCGTCCAAGTGGCCCACGCTGTGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCCAGCAGCAGGCGGTG------------CA-------------------------------------------------------GCAGCAGCA------ACAGCAGCA---------GCAGC------------------A-------------------------------------------------------------------------------------------------------------------------------------------------AGCGGCGCAGCAGCAGCAGCAGACGG------TGGCGCAGCA-GCAGCAACAGCAACA------------------------------------------------ACAGGCCGTGGC---------GCAGCAACAGCATG-----------C--------GGCT-----------------------------------------------------------------CAGCAGCAGCAGGTCA------AGCAACTGGAGGAACT------------------------------------------------GAATCGGGCTGTGATGCTCCAGCGCTTTCAGGCTGCCCGGCAGCCGGCAA----ACSizeHit CountTotal NormTotal
No Reads
droTak1
AG----GCCCAGC-AGC------AGCAGAGGGAGCAGCAACAGCAGGTCGCCCAGGCTCAGGCGCAGCAGCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGCACTCGCCAACGCCACTCA----GCAGATCCTCCAGGTGGCGCCCAACCAGTTCATCACCTCCCACCAGCAGCAG------------------------------CAGCAGCAGCAGC---TCCACAACCA-------------------------------------------------------------------------------------------------------------------------------------------------ACTGATCCAGCAGCAGCTGCAGCAAC------AGGCGCAGGC-GCAGGCACAGGTTCAAGCCCAGGTGCA---------------------------------------GGCCCAGGC---------GCAGCAGCAACAACAGCAGCGG----GAGCAGCAGCAG-----------------------------------------------------------------CAGCAGCAGCAGAACATCATCCAGCAGATTGTGGTGC--------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droEle1
GG-----CCCAGT-ACC------AGGCGCAGCAGCAGCAGCAGGCTCAGGCCCAGGCCCAAGCTCAGGCGCAGGCCCAGGCGCAGGCA------CAGGCGCAGGCAC------------------AGGCCCAGGCC------------------------------------C------------A----------------------------------------------------------------------------------GCAGCTAGCC------------------------------------------CAGCAGCAGCTGG------------------CCCAGCACCAGCAGCTGGC------CGC-------------------------------------------------------------------------------------------------------CGCCGTCCAAGTGCATC---------------------------------ACC------------------AGCAGCAGCA-ACAGCAGCAGCA---------------------------------------------------ACAGGCGGTCGTGGCCGTTCAGCAGCAACAGCAGG-----CCGCAGC----AGCGGCGGCTGCGGCGGCGGTCAAGATGCAACT------------------------------------------------------------------------------------------------------------------------------GAC---CGCCGCCACGCC-C---ACCTTCAC---GTTCAGCGCCCTGCCA----ACSizeHit CountTotal NormTotal
No Reads
droRho1
AG----GCTCGGG-ATT------GAGCTCTGGTTCAGGCACTGGTTCGTGTTCCGGTTCGTGTTCCGGATCGGTTTCAGGCTCGGGTTCAGGTTCAGGTTCAGGTTC------------------AGGTTCAGGCT------------------------------------C------------TGGTTCAGGCTCTGGT---------------------------------------------------------------TCAG----------------------------------------------------------------------------------GCTCGGGCTCAGGCTCAGGCTCTGGTTCAGGCTCTG-------------------------------------------------------------------------------------------------------------------------------------------------GTTCAGGCTCTGGTTC------ATGACAAGGCGTCTGGTTCAGGCTCAGGCTCTGGTTCAGGTTCCGGCTCAGGATCTG---------------GATCAGGC---------------------------------TCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTCSizeHit CountTotal NormTotal
No Reads
droFic1
AA----GCCCAGG-TGC------AGGCGGCCCAGGTGGCCCACGCTGTGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCCAGCAGCAGGCAGTGGCG---------CA-------------------------------------------------------GCAGCAACAGGCGGCAGTGCAGCA---------GCAGCAACAGCAACAGGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGTGC------------AGCA-GCAGCAACAG---------------------------------------------------CAGCAGGCCGTGGT---------TCAGCAACAACAACAACAGGCG----GCGGTGGCTCAG-----------------------------------------------------------------CAGCAGCAGCAGGTCA------AGCAACTTGAGGAACT------------------------------------------------GAATCGGGCCGTTATGATCCAGCGCTTACAGGCTGCCCGGCAGCCGGCGA----ATSizeHit CountTotal NormTotal
No Reads
droKik1
CC--AAAACCAGG-CCCAGATTCAGGC------TCAGGCGCAGGCCCAGGCTCAGGTTCAAGCTCAGGCTCAGGCACAAGCTCAGGCT------CAGGCTCAAGCAC------------------AGGCTCAGGCC------------------------------------A------------ACATGCAG-----------------------------------------------------------------------------------CG------------------------------------------------------------------------------------------------------------------TATCAACTACGCTTATAGCTATGGCAACTTGTATAACCCTTATGGCGGGGTCACCTCCTCCATGGTAAGCCTCACCAGCTCCAGTCCCTCCTACGCCCAGGCACAGATGCAACAGCAGCAGCAGCAGCAA---GCGCAGCAGCAGCAACAAGTGC------AGGCTCAAGT-CCAGGCCCAGGCTCAGGCC------------------------------------------------GCCTATGC---------CCAACAGGCCTAT-----------GC----AGCCTATG-----------------------------------------------------------------CTGCGGCTGCGGGACT------AGCTCCCCAAGCCAC--------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droAna3
AA----GCCCAGG-CTC------AAGCTCAAGCTCAAGCTCAGGCTCAAGCTCAGGCTCAAGCTCAGGCTCAAGCTCAGGCTCAAGCTCAGGCTCAAGCTCAAGCTC------------------AGGCTCAAGCTCAGGCTCAAGCTCAGGCTCAAGCTCAGGCTCAAGCTCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCAAGCTCAGGCTCAAGCTCAGGCTCAAGCTCAG----------------------------------------------------------------------------------------------------------------G---------------------------------CTCAAGCTCAAGCTC------AGGCTCAAGC-TCAGGCTCAAGCTCAAGCTCAAGCTCAAGCTCAGGCTCAAGCTCAGGCT--------------------------------------------------------TCAGC----TTCGGCTTCAGCT---------------------------------------------------------------CAA-----------------------------------------------------------------------------------------------GCT-C---AGGCCCAA---GCTCAGGCTCCAGCTCAAGC-TSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................CTCAGGCTCAAGCTCAGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20180.061100000
.................................................................................................................................................................................................................................................................................................................................................................................CTCAGGCTCAAGCTCAG----------------------------------------------------------------------------------------------------------------G---------------------------------CT.......................................................................................................................................................................................................................................................................................................................................................................20180.061100000
..............................................................................................................................................................CTCAGGCTCAAGCTCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20180.061100000
..........................................................................CTCAGGCTCAAGCTCAGGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20180.061100000
..................................................................................................................................................CTCAGGCTCAAGCTCAGGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20180.061100000
.....................................................................................................................................................................................................................................................................................................................................................................CTCAGGCTCAAGCTCAGGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20180.061100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGCTCAAGCTCAGGCT--------------------------------------------------------................................................................................................................................................................................................................................20180.061100000
..................................................CTCAGGCTCAAGCTCAGGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20180.061100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTC------AGGCTCAAGC-TCAGGCT..................................................................................................................................................................................................................................................................................................................................20180.061100000
......................................................................................................................................CTCAGGCTCAAGCTCAGGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20180.061100000
..........................................................................................................................................................................CTCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCAAGCTCAGGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20180.061100000
......................................CTCAGGCTCAAGCTCAGGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20180.061100000
........................................................................................................CTC------------------AGGCTCAAGCTCAGGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20180.061100000
droBip1
AA----GCACAGG-CTC------AAGCTCAAGCACAGGCTCAGGCACAGGCTCAAGCTCAAGCACAGGCTCAAGCTCAAGCACAGGCTCAAACACAGGCTCAGGCACAGACTCAAGCACAGGGTCAGGCTCAGGCG------------CAGGCTCAAGCACAGGCTCAAGCTCAGGCTCAAGCTCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCAAGCACAGGCTCAAGCTCAGGCTCAGGCGCAG----------------------------------------------------------------------------------------------------------------G---------------------------------C------------TC------AAGCTCAGAC-ACAGGCTCAAGCTCAGGCTCAAGCTCAGGCACAGGCTCAAGCTCAGGCACAGGCTCAAGCT------------------------------------------CAG----GC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAG---GCTCAAGCTCAGGCTCAGG--CSizeHit CountTotal NormTotal
No Reads
dp5
GG-----CACAGG-CTC------AGGCCCAAGCTCAGGCCCAAGCTCAGGTTCAGGCTCAGCAACAGCAGCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGGCATTGGCG---------CA----GCAGATACTGCAGGTGGCGCCAAACACCTTCATCACCTCCCACCA---------------------ACAGCAGCA------GCAGCAGCAGCAGC---TCCACAACCA-------------------------------------------------------------------------------------------------------------------------------------------------ACTGCTGCAGCAGCAGCTCCAGCAGC------AGGCGCAGGC-CCAAGTGCAAGCTCAGGTTCAGGCTCAGGCACAGGCACAGGCCCAG------------------------------------------CAGCAACAGCAACAGCAACAGC----AGCGGGAG-----------------------------------------------------------------CAGCAGCAGCAGAACATAATCCAACAAATTGTGGTAC--------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC----AGCGGGAG-----------------------------------------------------------------CAGCAGCAGCAGAAC...............................................................................................................................2711.0010001000000
.................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGC---TCCACAACCA-------------------------------------------------------------------------------------------------------------------------------------------------....................................................................................................................................................................................................................................................................................................................................................................................2020.5010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGGCCCAG------------------------------------------CAGCAAC..........................................................................................................................................................................................................................................1920.5010000100000
............................................................................................................................................................................................................................................................................GCAGATACTGCAGGTGGCGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010100000000
...............................................................................................................................................................................................................................................................................GATACTGCAGGTGGCGCCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010100000000
...........................................GCTCAGGTTCAGGCTCAGCAACAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----AGCGGGAG-----------------------------------------------------------------CAGCAGCAGCAGAAC...............................................................................................................................2420.5010001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGTTCAGGCTCAGG............................................................................................................................................................................................................................................................................................................1920.5010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCCCAG------------------------------------------CAGCAACAG........................................................................................................................................................................................................................................1920.5010100000000
......................................................................CAG------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGGCATTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010100000000
.....................................................................GCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGGCATTGGCG---------CA----GCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.5010100000000
...................................................................................................................................................................................................................................................................................................................CCACCA---------------------ACAGCAGCA------GCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020200000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCACAGGCACAGGCCCAG------------------------------------------.................................................................................................................................................................................................................................................20110.0910100000000
......................................................................................................................................................................................................................................................................................................................CCA---------------------ACAGCAGCA------GCAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100000
.............................................................CAACAGCAGCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAGCAACAGC----AGC....................................................................................................................................................................................................................22200.0510100000000
.........................................................TCAGCAACAGCAGCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000100000
...................................................................................................................................................................................................................................................................................................................CCACCA---------------------ACAGCAGCA------GCAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510100000000
....................................................................................................................................................................................................................................................................................................................CACCA---------------------ACAGCAGCA------GCAGCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAGCAACAGC----AG.....................................................................................................................................................................................................................19200.0510100000000
....................................................................................................................................................................................................................................................................................................................CACCA---------------------ACAGCAGCA------GCAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510001000000
.....................................................................................................................................................................................................................................................................................................................ACCA---------------------ACAGCAGCA------GCAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000100000
droPer2
TG----GCTCACT-CTT------AGGTTCTGGCTCACTCTTCGGCTCTGGCTCACTCTTCGGCTCAGGTTCGCTCTGCGGCTCAGGGACGCTCTTCGGCTCAGGGAT------------------GCTCTTCGGCTCAGGTTCGCTCTT------------AGGTTCACTCTTAGGTTCTGGCTCAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTAGGTTCAGGTTCGCTTTTAGGTTCTGGTTCGC----------------------------------------------------------------------------------------------------------------T---------------------------------CTTCGGCTCGGGCTCACTCTTCGGCTCAGGC-TCACTCTTCGGCTCAGGTTCACTCTTCGGCTCAGGCTCGCTCTTCGGTTCTGGTTCGCTCT------------------------------------------TCG----GC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGGC-TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GGCT--CGGGTTC-TTC------TGGAGCGGGTTCTGGCTCAGGTTCTGG------------CACAGGTTCGGCCTCAGGTTCTGGCT------------------------------------------------------------------------------------C------------AGCTGCGGGCACAGGT---------------------------------------------------------------TCTG----------------------------------------------------------------------------------GCTCAGGTACTGCCTCAGGCTCTGGCTTAGGTTCTGGAACTATTTCCACTA-------------------------------------------------------------------------------------------------------------------------------------------CAGCTTC------TGGTTGAGGT-TCAATTTCTAACTT------------TGTCTCCTGTTCAGGCTCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCAG---GCTCTGCTTCCGGTTC----AGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
GG----ATCCAAT-TCC------AGCTCCAGTCCCAGTCTTAGTCCCAGTCCTAGTCCTAGTCAAAGCTTTAGTCTCAGTCCCAATCCCAGCTCCAGTCCCAGCTCC------------------AGTCCCAGCTCCAGTCCCAGCTTC------------AGTCCCAGTCCTAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCAGCCCCAGCTCCAGTTTTAGCTCCTGTCCCAACCCCAGTTGCAG----------------------------------------------------------------------------------------------------------------C---------------------------------CCCAGCCACAGTCCC------AGCTCCAGTC-TTAGCTCCAGTCTTAGCTCTAGCCCCAATCCCAGTCCCAGTCCTAGTCCCAGTCCTTGTCC------------------------------------------CTG----TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAGT--CSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........AAT-TCC------AGCTCCAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1530.331000000000000000000000000000000000000000000000000000000000000001
droMoj3
AT----GCTCAGG-CCC------AGGAACAGGCTCAGGCTCAAGCTCATGCGCAACTTCAGGCCCACGCCCAGCTCCAAGCTCACGCCCACCTCCAGGCCCAAGCTCAAGCTC------------AGGCTCAGGCTCAGGCCCAGGCCCAAGCCCAGCTCCAGGCACAGGTTCAGGCCCATGCCCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCAGGCACACGCCCATGCACAGGTTCAGGCCCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------GCCC------AGCTCCAGGC-GCAAGTCCAGGCCCATGCTCATGCCCAGCTCCAGGCGCATGTCCAGGCCCAGGCACACGCA------------------------------------------CAG----GC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAG---GCACATGCTCATGCACAGG--CSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......GCTCAGG-CCC------AGGAACAGGCTCAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.......................AGGAACAGGCTCAGGCTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100
............................................................................................................................................................GCTCCAGGCACAGGTTCAGGCCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGCA------------------------------------------CAG----GC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAG---GCACAT................2120.501100000
.......................................................................................................GCTCAAGCTC------------AGGCTCAGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.251100000
........................................................................................................CTCAAGCTC------------AGGCTCAGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1950.201100000
droGri2
CA---GGTCCAGT-CTC------AGGCTTACCTCCAGATACAGCCCCAGCTCCACCTCCAGGTCCAGCATCAGTTTTAATTCCCGGTCCGACGTCAGTCTTATCTCC------------------AGGTCCAGCACCGGGCTTAACTGC------------GGGTCCAGCACC------------AGGTGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------AACAGGTTTAGCTGCAGGATCAGCACTTGGCTTAACAGCGGGTCCAG-------------------------------------------------------------------------------------------------------------------------------------------------CACCAGCTCTACCACC------AGGTCCAGCC-ACAGCTTTAACTCCCGGTTCAGCACCAGTCTTATCTCCACGTCCAGTACCACGTTTATCTC------------------------------------------CAG----AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAG---CSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 09:21 AM