ID:

dsi_24675

Coordinate:

3l:8037010-8037159 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-31.1	-31.1	-31.0

Flybase annnotation

intergenic

No Repeatable elements found

mature

star

Sense Strand Reads

AGCGCGGCCTGGACTTCCAACAGATTAGCATCGCAGATTTGACCATTACAGTGAGTATGTTCTAGGTATTAGCTAAATTGGTTATATGTATATTTAGAGTTTGGGAACTTTGTATATATATGATAGAGAGATAGCCCTAACTTATTCCTTCCCCCCCACTTAGACCATGTTCCACCAGGTGTTTGGCAACCTGTACAAGGCGGTGGCCGGGAACACCATCGGCGACAAGACCATCAAGAGCAGACGCTTG ************************************************..(((((((.(((((((....((((..((.(((((((((((((..((((((....)))))))))))))))))))...))..))))......................))))))).)))))))...(((((........))))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M023 head	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo
.........................................ACCATTACAGTGAGTATGTTCTAGGTA......................................................................................................................................................................................	27	0	1	1.00	1	0	1	0	0	0	0
........................................................................................TATATTTAGAGTTTG...................................................................................................................................................	15	0	4	0.50	2	1	0	0	1	0	0
...........................................................................................................................................................................................................TGGGCGGGAACACCA................................	15	1	9	0.33	3	1	0	0	0	2	0
.....................................................................................................................................................................................................AAGCGGTGGGCGGAAACACCA................................	21	3	3	0.33	1	1	0	0	0	0	0
..............GTCCAACAGTTTAGCATCGCC.......................................................................................................................................................................................................................	21	3	4	0.25	1	0	0	1	0	0	0
..........................................................................................................................................................................................................GTGGGCGGGAACACCA................................	16	1	5	0.20	1	1	0	0	0	0	0
..............................................................AAGGAATTAGCTCAATTGGTT.......................................................................................................................................................................	21	3	5	0.20	1	0	1	0	0	0	0
........................................................................................................................................................................................................TGGTGGGCGGGAACACCA................................	18	2	7	0.14	1	1	0	0	0	0	0
............................................................................................................................................................................................................GGGCGGGAACACCAT...............................	15	1	9	0.11	1	1	0	0	0	0	0
............................................................................................................................................................................................................GGGCGGGAACACCAGCGCCG..........................	20	3	12	0.08	1	1	0	0	0	0	0
........................................................................................TATATTTAGAGTTTCGCA................................................................................................................................................	18	2	13	0.08	1	0	0	0	0	0	1
..........................................................................................................................................................................................................CCGGCCGGGAACACCA................................	16	2	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................................GCTGGGCGGGAACACCA................................	17	2	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................GCTGTGGGCGGAAACACCA................................	19	3	20	0.05	1	1	0	0	0	0	0

Anti-sense strand reads

TCGCGCCGGACCTGAAGGTTGTCTAATCGTAGCGTCTAAACTGGTAATGTCACTCATACAAGATCCATAATCGATTTAACCAATATACATATAAATCTCAAACCCTTGAAACATATATATACTATCTCTCTATCGGGATTGAATAAGGAAGGGGGGGTGAATCTGGTACAAGGTGGTCCACAAACCGTTGGACATGTTCCGCCACCGGCCCTTGTGGTAGCCGCTGTTCTGGTAGTTCTCGTCTGCGAAC ************************************************..(((((((.(((((((....((((..((.(((((((((((((..((((((....)))))))))))))))))))...))..))))......................))))))).)))))))...(((((........))))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	M023 head	M024 male body
..........................................................................................................................................................................................................................AGCCGCTTCTCTGGTGGTTCTCGTCT......	26	3	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................GAAGCAGGGGTGAATATGGTA..................................................................................	21	3	2	0.50	1	0	1	0	0	0	0
................................................................................................................................................................................................................CCCTTGTTGTCGCCACTGTTC.....................	21	3	4	0.25	1	0	0	1	0	0	0
...............................GCGTCTAAACTGCTA............................................................................................................................................................................................................	15	1	9	0.22	2	0	0	0	2	0	0
.............GCATGTTGTCTAATCGT............................................................................................................................................................................................................................	17	2	8	0.13	1	1	0	0	0	0	0
.........................................................ACAAGGTCCAGACTCGATT..............................................................................................................................................................................	19	3	20	0.10	2	0	0	0	0	2	0
...........................................................................TCAACCAATATACGTATA.............................................................................................................................................................	18	2	15	0.07	1	0	0	0	0	0	1
.....................................................................................................................................................GGGGGGGGTCAATCTG.....................................................................................	16	2	20	0.05	1	0	0	1	0	0	0
...............................GCGTCTAAACTGCTAG...........................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	1	0	0

Generated: 04/24/2015 at 10:41 AM