ID:

dsi_24673

 Coordinate:

2r:5643612-5643690 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-13.8 -13.5 -13.4

Flybase annnotation

exon [2r_5642426_5643611_-]; CDS [2r_5642426_5643611_-]; CDS [2r_5643691_5643833_-]; exon [2r_5643691_5643923_-]; intron [2r_5643612_5643690_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------##################################################
GCCTTCTGGAACGCACTGCTCAACTACAACATTGTGTTGCCGGAGAACAGGTGAGTGGATTGGAACAGGAGTGGAGCAACAACGTCAGCAGGGCTAATCTCGGGCTGTTGGAAATGGTGTGTATTTCAGCCAGGACCAGCTCAACCTGGACAGCCGGCTGGAGGCGCTGTGCCAGTCGT
**************************************************.................((((((..(((.((...(((((((..((......)).)))))))...)).))).))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 M023
head
 M053
female body
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
....................................TTGTCGGAGATCAGTTGAGTG.......................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................CTCGGGCTGTTGGAAATGGTGTG.......................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0
........................................................................................CAGGGCTAATCTCGGGCTGTTGGAAATG............................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0
................................................................................AACGTCAGCAGGGCTAATCTAGGG........................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................GGGCTGTTGGAAATGATGTGT......................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0
...............................TTTTGTTGCCGGAGAACA.................................................................................................................................. 18 1 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................AACAGGAGTGGAGCAT.................................................................................................... 16 1 4 0.25 1 0 0 0 0 0 1 0 0
....................................TTGCCGGAGAACTGATCAGTG.......................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0
..............................................................................................TAATCTTGGGTTGTTGGCAA................................................................. 20 3 12 0.08 1 0 0 0 0 0 0 1 0
............................................GAATAGGTGAGTGGA........................................................................................................................ 15 1 14 0.07 1 0 1 0 0 0 0 0 0
.................................................................................................................................CCAAGGCCAGCTCAACC................................. 17 2 20 0.05 1 0 0 0 0 0 1 0 0
.......................................................................................................TCTTTTGGAAATGGTGTTTAT....................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

CGGAAGACCTTGCGTGACGAGTTGATGTTGTAACACAACGGCCTCTTGTCCACTCACCTAACCTTGTCCTCACCTCGTTGTTGCAGTCGTCCCGATTAGAGCCCGACAACCTTTACCACACATAAAGTCGGTCCTGGTCGAGTTGGACCTGTCGGCCGACCTCCGCGACACGGTCAGCA
**************************************************.................((((((..(((.((...(((((((..((......)).)))))))...)).))).))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
.................................................CCACTCTCCTAAGCTTG................................................................................................................. 17 2 10 0.30 3 0 0 2 1
.............................................................................................................................................TTTGGACCTGTCGGCTCACCT................. 21 3 4 0.25 1 0 1 0 0
...........GCGTGACGAGTTAATGTTGA.................................................................................................................................................... 20 2 4 0.25 1 1 0 0 0
..............TGACGAGTTAATGTTGA.................................................................................................................................................... 17 2 20 0.15 3 3 0 0 0
...............GACGAGTTGGTGTTGTAT.................................................................................................................................................. 18 2 8 0.13 1 1 0 0 0
...........................................................................................................................AAAGTGGGGCCTGGTCG....................................... 17 2 12 0.08 1 1 0 0 0
...................AGTTGATGTTGTAAT................................................................................................................................................. 15 1 20 0.05 1 0 0 0 1

Generated: 04/23/2015 at 08:18 PM