ID:

dsi_24665

 Coordinate:

3l:7194712-7194901 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-18.2 -18.2 -17.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CCTGAATGGGACTTGTGCCAATCTCTGTGACCACCAATCGCGCGCAAATGGTAAGTGCAATCCGCATCTAAGCTGCAAAGTGGGGAGCTGCAGGTGCTGCTAGTTAGTTTACTTTGGTGACGCCACGCCCAATGTGACAAATTGGAATCGGTGGCAATTCGTTTCGGGGTGCAAGTGGCATGCAGCGTGGTGGTTGAACCGCTTTCTCATTGCGAACGCATTTCTTCTCCTGCCCTCCAGACCATTGAGCATTGTGCAGCAGGCTATTGAGGCTCTGGCAAGTAACCACA
****************************************************************************************************************..((.((..(((((((((..((.(((.(((((..........))))).))).))))))....)))))...)).))******************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 M024
male body		 O001
Testis
 O002
Head
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
.............................ACCACCAATCGCGCGCAAATG................................................................................................................................................................................................................................................ 21 0 1 2.00 2 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................TGAGGCTCTGGCAAGTAAC.... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............TGCCAATCTCTGTGACCACCA.............................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................TTTGGTGACGCCACGCCCAATG............................................................................................................................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................CGGGGTGCAAGTGGCATGCAGCG....................................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................................TTGAGGCTCTGGCAAGTAACC... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................CCAATCTCTGTGACCACC............................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................TGAGGCTCTGGCAAGTAACC... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................AATCGCGTGCAAATGGT.............................................................................................................................................................................................................................................. 17 1 2 0.50 1 0 0 0 0 0 1 0 0 0
............................................................................................................................................................ATTCGTTTCGGGATG....................................................................................................................... 15 1 9 0.11 1 0 0 0 0 0 0 1 0 0
......................................................................................................................................GAACAAATTGGAATCGGT.......................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 0 1 0
...............................................................GCATCTAAGCTGGAA.................................................................................................................................................................................................................... 15 1 11 0.09 1 0 0 0 0 0 0 0 0 1
...................................................................................................................................................................................................................................TCCTGCCGTCCTGACCA.............................................. 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

GGACTTACCCTGAACACGGTTAGAGACACTGGTGGTTAGCGCGCGTTTACCATTCACGTTAGGCGTAGATTCGACGTTTCACCCCTCGACGTCCACGACGATCAATCAAATGAAACCACTGCGGTGCGGGTTACACTGTTTAACCTTAGCCACCGTTAAGCAAAGCCCCACGTTCACCGTACGTCGCACCACCAACTTGGCGAAAGAGTAACGCTTGCGTAAAGAAGAGGACGGGAGGTCTGGTAACTCGTAACACGTCGTCCGATAACTCCGAGACCGTTCATTGGTGT
*******************************************************************************************************..((.((..(((((((((..((.(((.(((((..........))))).))).))))))....)))))...)).))**************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
.......................................................................................................................................................................................................................................CGCGAGATCTGGTAACTCGG....................................... 20 3 2 0.50 1 1 0 0 0
....................................................................................................................................................................................................TTGGCGATAGAGTAA............................................................................... 15 1 4 0.25 1 1 0 0 0
...........................................................................................................................................................................................................................................AGGTATGGTAACTCG........................................ 15 1 12 0.17 2 0 0 2 0
.....................AGAGACGCTGGTGGT.............................................................................................................................................................................................................................................................. 15 1 7 0.14 1 0 1 0 0
.......................................................ATGTTGGGAGTAGATTCGA........................................................................................................................................................................................................................ 19 3 8 0.13 1 1 0 0 0
............................................................................................................................................................................................................AGAGTAACGCTTGCT....................................................................... 15 1 9 0.11 1 0 0 0 1
.............................................................................................................................................................................................................................................................................TCCGAGGCAGTTCATAGGT.. 19 3 12 0.08 1 0 1 0 0
.....................AGAGAGACTGGTAGTTA............................................................................................................................................................................................................................................................ 17 2 16 0.06 1 1 0 0 0
...........................................................................................................................................................................................................................................AGGTCTCGTGACTCGTA...................................... 17 2 20 0.05 1 0 0 0 1

Generated: 04/23/2015 at 08:05 PM