ID:dsi_2465 |
Coordinate:3l:7472754-7472903 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
intergenic
No Repeatable elements found
|
AAAGCGGTTGGTGGAAGTGCATAAAGTTGGCGCTTTTCAATTAATGTGCTCACGCTTTTTCGCACATTATCGATGGCGATGTGGCCACCCAGGGTGCACCAATTGAGACCGCGTCCCAGTGCGATTTCCCACATCTGGAGATCTTTTATGGCCCATCTCTTAACTACGCTCGTACTATATATATCTGATTTTCTTTGCAGGCACACGCACCCTCCAAGGCGACCCACTTGTGACTGTGGACGCGGCCTGT
**************************************************..((((...(((........))).))))(((.(((((((...)).((((....((.(((...))).))))))(((((((.......))))))).....))))))))............................................************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553485 Chicharo_3 day-old ovaries |
M024 male body |
SRR553486 Makindu_3 day-old ovaries |
SRR553488 RT_0-2 hours eggs |
SRR618934 dsim w501 ovaries |
SRR553487 NRT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................................................................................................................CTTGTGACTGTGGACGCG...... | 18 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| .................................................................................................................................................................................................................................ACTTGTGACTGTGGAC......... | 16 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .................................................................................................................................................................................................................................ACTTGTGACTGTGGACGC....... | 18 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..........GTGGAAGTGCATAAAGG............................................................................................................................................................................................................................... | 17 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................................TTCTATGGCCAATCTCTCAAC...................................................................................... | 21 | 3 | 2 | 0.50 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ...............AGTGCATGAAGTTGG............................................................................................................................................................................................................................ | 15 | 1 | 16 | 0.25 | 4 | 3 | 0 | 0 | 1 | 0 | 0 |
| .AAGAGGTTGGTGGAACT........................................................................................................................................................................................................................................ | 17 | 2 | 13 | 0.15 | 2 | 0 | 0 | 0 | 2 | 0 | 0 |
| ............................................................................................GGTGCACCAATTGAGAT............................................................................................................................................. | 17 | 1 | 7 | 0.14 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| ...................................................................................................................................................................................................................................TAGTGACTGTGGACG........ | 15 | 1 | 11 | 0.09 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| .AAGAGGTTGGTGGAA.......................................................................................................................................................................................................................................... | 15 | 1 | 14 | 0.07 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| .................................................................................................................................................................................................................................ACTTGTGAATGTGGA.......... | 15 | 1 | 18 | 0.06 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
| ................................................................................................................................................................................................................................CACTTGTGACTGTGCAG......... | 17 | 2 | 19 | 0.05 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| .................................................TCCCGCGTTTTCGCACA........................................................................................................................................................................................ | 17 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| .TAGAGGTTGGTGGAACTGC...................................................................................................................................................................................................................................... | 19 | 3 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
|
TTTCGCCAACCACCTTCACGTATTTCAACCGCGAAAAGTTAATTACACGAGTGCGAAAAAGCGTGTAATAGCTACCGCTACACCGGTGGGTCCCACGTGGTTAACTCTGGCGCAGGGTCACGCTAAAGGGTGTAGACCTCTAGAAAATACCGGGTAGAGAATTGATGCGAGCATGATATATATAGACTAAAAGAAACGTCCGTGTGCGTGGGAGGTTCCGCTGGGTGAACACTGACACCTGCGCCGGACA
**************************************************..((((...(((........))).))))(((.(((((((...)).((((....((.(((...))).))))))(((((((.......))))))).....))))))))............................................************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | O001 Testis |
SRR553485 Chicharo_3 day-old ovaries |
SRR618934 dsim w501 ovaries |
GSM343915 embryo |
SRR553487 NRT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|
| ............................................................................................................................................................................................................................CTGGGTGAACACTGACACCTG......... | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................................................................GGGGTTCCGCTGGGTG....................... | 16 | 1 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 |
| .............................................................CGAGTAATAGCTACCGCCACG........................................................................................................................................................................ | 21 | 3 | 5 | 0.20 | 1 | 0 | 0 | 0 | 1 | 0 |
| ...............................................................................................................................................................................................................GTGGGAGGGTCCGCGGGG......................... | 18 | 2 | 6 | 0.17 | 1 | 0 | 0 | 1 | 0 | 0 |
| ......................................................................................TGGGTCCCACGAGCATAAC................................................................................................................................................. | 19 | 3 | 9 | 0.11 | 1 | 0 | 0 | 0 | 0 | 1 |
| ...............................................................................................................................................................................................................GTGGGAGGGTCCGCGGGGA........................ | 19 | 3 | 18 | 0.06 | 1 | 0 | 0 | 1 | 0 | 0 |
| ..........................................................................................................CTGGCGCAGAGTCACA................................................................................................................................ | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 1 | 0 | 0 |
Generated: 04/24/2015 at 10:09 AM