ID:

dsi_24626

 Coordinate:

3r:92073-92222 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-44.0

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GCCGAGAAAACATAGCGACGGTCTAGTGAAAAGTGGCAAGCAAAGCAAAAGTATTAAGCACACACACACTGCCAGTGCGCACGGACACACACAGCACACCAGCACACTCCAGCACCAACACACTAGAGCAAGTGCGTGTACATAGAGGGTTTGTGCGGGCACATATGTGCCACACACACACACACACTGGCACGTACGATGTCGATACTGGCTCACAGTGGTGGTATTTAAAAATCGACGAACGGCCCGA
**************************************************.................(((((((((((((((((((.........((((..((((.(((.((..........)).)))...)))))))).........)))))))))(((((....))))).............)))))))).)).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
.............................................................................................................................................................................................GCACGTACGATGTCGATAC.......................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................ACGGACACACACAGCACACCAGCACAC............................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0
............TAGCGTCGGTCCAGTTAAAAGTG....................................................................................................................................................................................................................... 23 3 1 1.00 1 0 0 1 0 0 0 0
.....GAAAACATAGCGACGGTCTAGT............................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0
.................................................................................CGGACACACACAGCACAC....................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................GTCGAGACGGGCTCACGGT............................... 19 3 2 0.50 1 0 0 0 1 0 0 0
..................................................................................................................................................................................................TACGATGTGGACACTGGCCC.................................... 20 3 8 0.13 1 0 0 1 0 0 0 0
...................................................................................................................................................................................ACACAGACCGGCACGTA...................................................... 17 2 10 0.10 1 0 0 0 0 1 0 0
..........................................................................................................................CTAGAGCAAATACGTG................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 1
...........ATAGGTATGGTCTAGTGA............................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 1 0
............TAGGGACGGTCGGGTGAA............................................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 1 0

Anti-sense strand reads

CGGCTCTTTTGTATCGCTGCCAGATCACTTTTCACCGTTCGTTTCGTTTTCATAATTCGTGTGTGTGTGACGGTCACGCGTGCCTGTGTGTGTCGTGTGGTCGTGTGAGGTCGTGGTTGTGTGATCTCGTTCACGCACATGTATCTCCCAAACACGCCCGTGTATACACGGTGTGTGTGTGTGTGTGACCGTGCATGCTACAGCTATGACCGAGTGTCACCACCATAAATTTTTAGCTGCTTGCCGGGCT
**************************************************.................(((((((((((((((((((.........((((..((((.(((.((..........)).)))...)))))))).........)))))))))(((((....))))).............)))))))).)).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
.....................................................................................................................................................................................................................GTGTCACCACCATAAATTT.................. 19 0 1 2.00 2 1 1 0 0 0 0
.....................................................................................................................................................................................................................GTGTCACCACCATAAATT................... 18 0 1 1.00 1 1 0 0 0 0 0
.............TCGCTGCCAGATCTC.............................................................................................................................................................................................................................. 15 1 2 0.50 1 0 0 1 0 0 0
........................................................................................................................................................................................................................TCATCACCATAAAGTTTCAGCT............ 22 3 4 0.25 1 0 0 0 1 0 0
.................................................................................................TGGTCGTCTGAGGTC.......................................................................................................................................... 15 1 5 0.20 1 0 0 0 0 1 0
.................................................TCTTAATTCGTGTGTTTCTGA.................................................................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 1 0
...........................................................................................................................................................................................................................CCACCATAAAGTTGCAGCTG........... 20 3 7 0.14 1 0 0 0 1 0 0
.......................................................................................................................................................................................................................................TTTCGCTGCTCGCCGGG.. 17 2 15 0.07 1 0 0 0 1 0 0
.........................................................................................................................................................................................................................................GATCTGCTTGCCGGG.. 15 2 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:92023-92272 + dsi_24626 GCC--GAG-AAAACA---TAGCGACGGTC----TA-GTGAAAAGTGGCA-AGC-AAAGC--AAAAGTATTAAGCACACACACACT-------------------------------GCCAGTGCGCACGGACACAC--ACAGCACACCAGCACACTCCAGCACCAACACACTAGAGCAAGTGCGTGTACATAGAGGGTTTGTGCG-GGCACA-TATGTGCC--------------------------------------------------ACACACACAC--------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA----------CAC-------T---------------------------------------------------------------GGCACGTACGATGTCGATACTGGCTCACAGTGGTGGT-ATTTAAA----------------------------------------------AA-TCGACGAA------------------------------------------------------C------G------------------------------------------G-CCCGA
droSec2 scaffold_6:226964-227213 + GCC--GAG-AAAACA---TAGCGACGGTC----TA-GTGAAAAGTGGCA-AGC-AAAGC--AAAAGTATTAAGCACACACACACG-------------------------------GCCAGTGCGCACGGACACAC--ACAGCACACCAGCACACTCCAGCACCAACACACTAGAGCAAGTGCGTGTACATAGAGGGTTTGTGCG-GGCACA-TATGTGCC--------------------------------------------------ACACACACAC--------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA----------CAT-------T---------------------------------------------------------------GGCACGTACGATGTCGATACTGGCTCACAGTGGTGGT-ATTTAAA----------------------------------------------AA-TCGACGAA------------------------------------------------------C------G------------------------------------------G-CCCGA
dm3 chr3R:107603-107824 + GCC--GAG-AAAACA---TAGCGACGGTC----TA-GTGAAAAGTGGCA-AGC-AAAGC--AAAAGTATTAAGCACACACACACT-------------------------------GCCAGTGCGCACGGACACAC--ACAGCA--------CACTCCCGCACCAACACACTAGAGCAAGTGCGTGTACATAGAGGGTTTGTGTGGGGCACA-TATGTGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG------------------------------------------------------------------------------------CACGATGTCGATACTGGCTCACATTGGTAGT-ATTTAAA----------------------------------------------AA-GCGACGAA------------------------------------------------------C------G------------------------------------------G-CCCGA
droEre2 scaffold_4770:456743-456988 + GCC--GAG-AAAACA---TAGCGACGGCC----TAGATGAAAAGTGGCA-AGC-AACGT--AAAAGTATTAAGCACACACACACT-------------------------------GCCAGTGCGCACGGACACGC--ACAGCACACAAGCGCAGCCACACACCAACACACTAGAGCAAGTGCGTGTACATAGAGGGCTTGTGTGAGGCACA-TATGTGGC--------------------------------------------------ACACACACAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------CA----------CCC-------T---------------------------------------------------------------------CGCGATTTCGATACTGGCGCACAGTGGTGGT-ATTTAAA----------------------------------------------AA-TCGACGAA------------------------------------------------------C------G------------------------------------------G-CCCGA
droYak3 3R:466176-466379 + GCC--GAG-AAAACA---TAGCGACGGTG----TAGGTGAAATGTGCCA-AGC-AAAGC--AAAAGTATTAAACACACACACACT-------------------------------GACAGTGCGCACGGACACGC--ACAGCACAC----------------TAATACACCAGAGCAAGTGT----------------------------A-TATGTGCC--------------------------------------------------ACCCACACAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT-----------CACCCG----------------------------------------------------------------------------------------CACGATGTCAATACTAGCCCACAGTGGTTGT-ATTTAAA----------------------------------------------AA-TCGACGAA------------------------------------------------------C------G------------------------------------------G-CCCGA
droEug1 scf7180000409759:42628-42813 + GTT--GAATAAAACA---TATCGGCGGCC----TAGGTGAAAAGTGGAA-ACA--TAGTGGGAAAGTATAAAACACACACAC--T-------------------------------G----------------CAC--ACAACACAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACA-----------------AC-GAGTG---------TGATTGTATA----------------------------------------------TAGGGG-CCA-AACA----TACACATAGGTATCATATATTCGT---------------------------------------------------------------------------------------ATAGCGATACTGGCCTT---TTGTGGT-ATTTAAC----------------------------------------------AG-TTGACTAA-------------------------------------------------------------------------------------------------------------GA
droBia1 scf7180000302098:380267-380462 - GCC--GAATAAAACA---GAGCGGCGGCC-----GGGTGAAAAGTGGAA-AGC-CAGGC--C-CAGCACTAGGCACGCACACAC--GCA-------------------------------------------------------CACCCGCACACCCCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAGTGCGGAGTGGAGC-GAGTG---------AGCGC-TACA----------------------------------------------TAGGGG-CCT-TGGA------CACA-----ACCACGCACTCGC---------------------------------------------------------------------------------------ACGTCGACACTG-CCCA---CCGA-GT-ACCGCA-------------G-------------------------G-------GG-TCGAG-CG------------------------------------------------------G------G------------------------------------------G-GCCGA
droTak1 scf7180000414441:51517-51744 - GCC--GAATAAAACA---TAGCGACGGCC----TAGGTGAAAAGTGGAA-AACCAAAGC--AAAAGTATTAAGCACACACACAC--ACA---------------------------CACAGAGCGTACGCACACAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGGCGAGTGCGGAGTTGAGC-GAGTG---------AGCGTGTATA----------------------------------------------TAGAGG-CCT-TGTG------CACA----TATCACGTATACGTA--TATTA-----------------------------------------------------------------------TACGT---ATGTCGATACTGGCCCA---TCGTTGT-ATTTAAA------------A-------------------------A-------AA-TCGACGAA------------------------------------------------------AA-----G------------------------------------------G-CCCGA
droEle1 scf7180000491104:1843078-1843299 + GCC--GAATAAAACA---TAGCGACGGCC----TAGGTGAAAAGTGGAA-AAC-CAAGC--AAAAGTACTAAGCACACACACAC--ATA----------------------------------CACATAAACACAC--AC-------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACACACACAC----------------------CATCTGCCGAGTGCGGAGTTGAGC-GAGTG---------AGCGTGTATA----------------------------------------------TAGAGG-CCT-TGTG------CACA----TATCACGTATACGTATACG-TA-----------------------------------------------------------------------TACGC---A---------TGGCCCA---TCGTGGT-ATTTAAA----------------------------------------------AG-TCGACAG-------------------------------------------------------C------C-------------------AC---------------------GGCC---
droRho1 scf7180000777910:28503-28691 - GCC--GAATAAAACA---TAGCGACGGCC----TAGGTGAACAGTGGAA-AAA-CAAGC--AAAAGTACTAAGCACACACTCAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCCGAGTGCGGAGTTGAGC-GAGTG---------AGCGTGTATA----------------------------------------------TAG-GG-CCT-TGTG------CACA----TATCACGTATACGT---------------------------------------------------------------------------------------ATGTCGATACTGGCCCA---TCGTGGT-ATTCAAA----------------------------------------------AG-TCGACGAA------------------------------------------------------A------G------------------------------------------G-GCCAC
droFic1 scf7180000454096:1230182-1230433 + GCC--GAATAAAACA---TAGCGACGGCC----TAGGTGAAAAGTGGAA-AAGCAAAGC--AAAAGTATTAAGCACACACA--CT-------------------------------GGCAGGGCGCACGCACACAC--ACA-------------------------------------------------------------------------------------------------------------------------------------------------CGCAAAAATTCGCACAAAGTCGCACACACAC-ACAGCAG------------CAGCAGGCGAGTGCGGAGTTGAGC-GAGTG---------AGCGAGTACA----------------------------------------------TAGGGG-CCT-GGTG------CACA----TATCACGTATACGT---------------------------------------------------------------------------------------ATGTCGATTCTGGCCCG---TCGTGGT-GTTTAAA----------------------------------------------AA-TCGACGAA------------------------------------------------------AA-----G------------------------------------------C-CACGG
droKik1 scf7180000302634:751899-752169 + GCC--GAATAAAACA---TAGCGACGGC-GGCCTAGGTGCAAAGTGAAA-------ACC--AAAAGTACTAAGCACACACACAC--ACACA-------------------------CACAGAGACCACGCACGCAC--ACATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------GTACACAT----------CATAGCACAGCGAAGCAGGCGAGTGTCGAGCAGAGCAGAGTCACTAACTACAGTGTGTATA----------------------------------------------TAAAGGGCTT-TAGG------CACA----TATCACGTATACGTA-------GGCCCCCTTAAAGTCCAGGAATAAG------------------------------------------------------------------------------------ACAAA-------------A--------------AACAACAGAATAAATAAATA-TGGC-----------------AGCAGAT----------------------------------C------G------------------------------------------G-CCCTC
droAna3 scaffold_13340:11113352-11113606 + GCC--GAATGAAACA---TGGCGACGGCC----TAGGTGTAAAGTGGAA-AAC-CA-----AAAAGTATTAAGCACACATACACACACACACACTGGGCCC------------------------TACACACTCACAAACAG---ACACGCACACACACACACATACATA--------------------------------------------------------------------------------------------------------------------------------------------------------CAGTGGA------------AAGCGAGTGCGGAGTTGAGC-GAGTA---------TACGTGTACA----------------------------------------------TAACGG-TCTCTATGCATATT-------------CG-----------------C-----------------------------------------------------------------------------------------CTCC---TTATGGTTATTCAA---ACAGAA----AAA-----------------AC----TGGTTAAAAA-CGGA-----------------AACATC-----------------------------------AAACCCCA------------------------------------------G-TCCGA
droBip1 scf7180000396691:12414-12664 + GCC--GAATGAAACA---TGGCGACGGTC----TAGGTGTAAAGTGGAA-AAC-CA-----AAAAGTATTAAGCACACACACCC--GTACACCCTGGGCCC------------------------TACACACTCACACACTG---CCATACACAC--------------------------------------------------------------------------------------------------------------------------------------------------ACACTCACACACACACTAAAACAGTGGA------------AAGCGAGTGCGGAGTTGAGC-GAGTA---------AACGTGTACA----------------------------------------------TAACGG-CCTCTATGCATATT-------------CG-----------------C-----------------------------------------------------------------------------------------CTCC---TTATGGTTATTCAA---ACAAA------AA-----------------AC----TGGTTAAAAA-TGGA-----------------AACATA-----------------------------------AA-----A------------------------------------------G-C-CCA
dp5 2:24828421-24828741 - GCC--GAATAAAACA---TAGTCACGGCCTGCCTGGGCGGAAAGTGGAA-AAC-----C--AAAAGTATTAAAAAAGCACACAC--CTA----------------------------------TACACAAGCACAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACTCACACACGCACATGTGCGTTCTACC--------------------GTGGCTGTGT-GAGTG---------AGCGTGTGCACAAGTGCATTACATACTGGTACATTATGTACGAGTATGTTTGCACA----------TTGTACATATA-------------CGTATACGT---------------------------------------------------------------------------------------A-------------TAC---GAATACATATACAT---ACAGAT------GTAGGCCCAGGCTTAAC---------------AA-TAAAATAAAACGCAAATCGGGAGCAAATCGCGAGCCCACTACGCACACATCACAGATCACAGT------G------------------------------------------G-CCCAA
droPer2 scaffold_6:127823-128179 - GCC--GAATAAAACA---TAGTCACGGCCTGCCTGGGCGGAAAGTGGAA-AAC-----C--AAAAGTATTAAAAAAGCACACAC--CTA----------------------------------TACACAGGCACAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACTCACACACGCACATGTGCGTTCTACC--------------------GTGGCTGTGT-GAGTG---------AGCGTGTGCACAAGTGCATTACATACTGGTACATTATGTACGAGTATGTTTGCACA----------TTGTACATATA-------------CGTATACGT-------------------------------------------------------------------------------------------------------------ATACATATACAT---ACAGAT------GTAGGCCCAGGCTTAAC---------------AA-TAAAATAAAACGCAAATCGGGAGCAAATCGCGAGCCCACTACGCACACATCACAGATCACAGT------GGCCCAAAAACCCCCTACCCACCGCCAATCCGTTCTTCCACCGT-TCCGA
droWil2 scf2_1100000004921:4245432-4245470 - GCA--A-----ATCC---TTGC---------------------------------------------------CACGCACACAC--ACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAC-------A---------------------------------------------------------------CACACACAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12822:1396011-1396241 + GCCCCGTATTAAATACCATTGCGAAAGTA------------AAGTGC----------AC--AAAAGTATTAAATAAAAAAAAAA--ATAAAAAAAAATACCAGCACATACGTACATGCCAGTGTGTGCGTGTGTGT--ATAT-----------------------------GTGT-----------------GTGTGTGTGTGTG-TGTACATTATATGCCTGAAAACGGACGCTGCGTAACAGAAATAATATACATATAAATACATAAACACACACACAC--------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC---------------------------------ACA------------------------------------------------GA-CAGATGCA------------------------------------------------------C------T------------------------------------------G-CTCGA
droMoj3 scaffold_6473:8949964-8950036 - GTA-----------------------------------------------------------CTCGTACTAATGA-----------------------------------------------------------------------------------------------------------------------------------------------GCC--------------------------------------------------ACACACACACACACACGCACA------C--ACAGACAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCGCAGTCAAGGA-GTGCAAA----------------------------------------------AA------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15074:2489681-2489968 - GCC--GAATAAAATACTATATCGA------------AAGCAAAGTGCACCCGC-AAAGC--AAAAGTATTAAATAAA------AT-------------------------------ACCAGCACATACGCCTATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACA----------------------------TGTGTGTGCCTATGTGT-GTGTG---------TGTGTGTGTG----------------------------------------------TGAGTG-CG--TATA------TATA----TATTATATACATGGG-------ATTCACACTCTAATC---AAATAAAATAAAATATGAAAAAAAAACAAAAGGCGCACACAAACACACACACACACACAC-ATAGAGAGAACCACTCACA--GACAGT-ATTTGCAATGCA--CTGCAA-------------------------G-------AAAACTAGAGG------------------------------------------------------C------A------------------------------------------G-CAGTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCC--GAG-AAAACA---TAGCGACGGTC----TA-GTGAAAAGTGGCA-AGC-AAAGC--AAAAGTATTAAGCACACACACACT-------------------------------GCCAGTGCGCACGGACACAC--ACAGCACACCAGCACACTCCAGCACCAACACACTAGAGCAAGTGCGTGTACATAGAGGGTTTGTGCG-GGCACA-TATGTGCC--------------------------------------------------ACACACACAC--------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA----------CAC-------T---------------------------------------------------------------GGCACGTACGATGTCGATACTGGCTCACAGTGGTGGT-ATTTAAA----------------------------------------------AA-TCGACGAA------------------------------------------------------C------G------------------------------------------G-CCCGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACGTACGATGTCGATAC.................................................................................................................................................................................................1911.00110000000000000000
..............................................................................................................................ACGGACACAC--ACAGCACACCAGCACAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
.......G-AAAACA---TAGCGACGGTC----TA-GT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
...............................................................................................................................CGGACACAC--ACAGCACAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
droSec2
GCC--GAG-AAAACA---TAGCGACGGTC----TA-GTGAAAAGTGGCA-AGC-AAAGC--AAAAGTATTAAGCACACACACACG-------------------------------GCCAGTGCGCACGGACACAC--ACAGCACACCAGCACACTCCAGCACCAACACACTAGAGCAAGTGCGTGTACATAGAGGGTTTGTGCG-GGCACA-TATGTGCC--------------------------------------------------ACACACACAC--------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA----------CAT-------T---------------------------------------------------------------GGCACGTACGATGTCGATACTGGCTCACAGTGGTGGT-ATTTAAA----------------------------------------------AA-TCGACGAA------------------------------------------------------C------G------------------------------------------G-CCCGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................ACGGTC----TA-GTGAAAAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
GCC--GAG-AAAACA---TAGCGACGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
.......G-AAAACA---TAGCGACGGTC----............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
dm3
GCC--GAG-AAAACA---TAGCGACGGTC----TA-GTGAAAAGTGGCA-AGC-AAAGC--AAAAGTATTAAGCACACACACACT-------------------------------GCCAGTGCGCACGGACACAC--ACAGCA--------CACTCCCGCACCAACACACTAGAGCAAGTGCGTGTACATAGAGGGTTTGTGTGGGGCACA-TATGTGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG------------------------------------------------------------------------------------CACGATGTCGATACTGGCTCACATTGGTAGT-ATTTAAA----------------------------------------------AA-GCGACGAA------------------------------------------------------C------G------------------------------------------G-CCCGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................TTGTGTGGGGCACA-TATGTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000030000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000010000000000000000000010000000
.....................................................................................................................................................................................................TTTGTGTGGGGCACA-TATGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................AAAAGTGGCA-AGC-AAAGC--AA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2016.0060000000000000000000000000000000000000000000000000000000002310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AACA---TAGCGACGGTC----TA-GTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000
.........................................................................CACACACACACT-------------------------------GCCAGTGCGCACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................ACACACACACT-------------------------------GCCAGTGCGCACGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................ACACT-------------------------------GCCAGTGCGCACGGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................AGAGGGTTTGTGTGGGGCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.........................................................................................................................TGCGCACGGACACAC--ACAGCA--------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................A-TATGTGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG------------------------------------------------------------------------------------CACGATGTCG.....................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................TATGTGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG------------------------------------------------------------------------------------CACGATGTCGATACTGGC.............................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................ATAGAGGGTTTGTGTGGGGCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCACATTGGTAGT-ATT............................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................ACACT-------------------------------GCCAGTGCGCACGGACACAC--AC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................AGGGTTTGTGTGGGGCACA-TA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................CACACTAGAGCAAGTGCGTGTACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------------------------------------------------------------------------------CACGATGTCGATACTGG..............................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACATTGGTAGT-ATTTAAA----------------------------------------------AA-GCG....................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................CATAGAGGGTTTGTGTGGGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................A-TATGTGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG------------------------------------------------------------------------------------CACGATGTCGA....................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
...................................................................................................................................................................................GTGCGTGTACATAGAGGGTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................TAAGCACACACACACT-------------------------------GCCAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..............................................................................................................................................CA--------CACTCCCGCACCAACACAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................GCACGGACACAC--ACAGCA--------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TAGCGACGGTC----TA-GTGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................TGCGTGTACATAGAGGGTTTGTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCTCACATTGGTAGT-ATT............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................TAGAGGGTTTGTGTGGGGCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................................................TGCGTGTACATAGAGGGTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................................................................ACACTAGAGCAAGTGCGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
...................AGCGACGGTC----TA-GTGAAAAGTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG------------------------------------------------------------------------------------CACGATGTCGATACTGGCTC...........................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................TA-GTGAAAAGTGGCA-AGC-.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
GCC--GAG-AAAACA---TAGCGACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
....................................................C-AAAGC--AAAAGTATTAAGCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ACGGTC----TA-GTGAAAAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GCC--GAG-AAAACA---TAGCGACGGCC----TAGATGAAAAGTGGCA-AGC-AACGT--AAAAGTATTAAGCACACACACACT-------------------------------GCCAGTGCGCACGGACACGC--ACAGCACACAAGCGCAGCCACACACCAACACACTAGAGCAAGTGCGTGTACATAGAGGGCTTGTGTGAGGCACA-TATGTGGC--------------------------------------------------ACACACACAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------CA----------CCC-------T---------------------------------------------------------------------CGCGATTTCGATACTGGCGCACAGTGGTGGT-ATTTAAA----------------------------------------------AA-TCGACGAA------------------------------------------------------C------G------------------------------------------G-CCCGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................GACGGCC----TAGATGAAAAGTGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
droYak3
GCC--GAG-AAAACA---TAGCGACGGTG----TAGGTGAAATGTGCCA-AGC-AAAGC--AAAAGTATTAAACACACACACACT-------------------------------GACAGTGCGCACGGACACGC--ACAGCACAC----------------TAATACACCAGAGCAAGTGT----------------------------A-TATGTGCC--------------------------------------------------ACCCACACAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT-----------CACCCG----------------------------------------------------------------------------------------CACGATGTCAATACTAGCCCACAGTGGTTGT-ATTTAAA----------------------------------------------AA-TCGACGAA------------------------------------------------------C------G------------------------------------------G-CCCGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......G-AAAACA---TAGCGACGGTG----TAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
............................................................................ACACACACT-------------------------------GACAGTGCGCACGGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000000000
droEug1
GTT--GAATAAAACA---TATCGGCGGCC----TAGGTGAAAAGTGGAA-ACA--TAGTGGGAAAGTATAAAACACACACAC--T-------------------------------G----------------CAC--ACAACACAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACA-----------------AC-GAGTG---------TGATTGTATA----------------------------------------------TAGGGG-CCA-AACA----TACACATAGGTATCATATATTCGT---------------------------------------------------------------------------------------ATAGCGATACTGGCCTT---TTGTGGT-ATTTAAC----------------------------------------------AG-TTGACTAA-------------------------------------------------------------------------------------------------------------GASizeHit CountTotal NormTotal
No Reads
droBia1
GCC--GAATAAAACA---GAGCGGCGGCC-----GGGTGAAAAGTGGAA-AGC-CAGGC--C-CAGCACTAGGCACGCACACAC--GCA-------------------------------------------------------CACCCGCACACCCCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAGTGCGGAGTGGAGC-GAGTG---------AGCGC-TACA----------------------------------------------TAGGGG-CCT-TGGA------CACA-----ACCACGCACTCGC---------------------------------------------------------------------------------------ACGTCGACACTG-CCCA---CCGA-GT-ACCGCA-------------G-------------------------G-------GG-TCGAG-CG------------------------------------------------------G------G------------------------------------------G-GCCGASizeHit CountTotal NormTotal
No Reads
droTak1
GCC--GAATAAAACA---TAGCGACGGCC----TAGGTGAAAAGTGGAA-AACCAAAGC--AAAAGTATTAAGCACACACACAC--ACA---------------------------CACAGAGCGTACGCACACAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGGCGAGTGCGGAGTTGAGC-GAGTG---------AGCGTGTATA----------------------------------------------TAGAGG-CCT-TGTG------CACA----TATCACGTATACGTA--TATTA-----------------------------------------------------------------------TACGT---ATGTCGATACTGGCCCA---TCGTTGT-ATTTAAA------------A-------------------------A-------AA-TCGACGAA------------------------------------------------------AA-----G------------------------------------------G-CCCGASizeHit CountTotal NormTotal
No Reads
droEle1
GCC--GAATAAAACA---TAGCGACGGCC----TAGGTGAAAAGTGGAA-AAC-CAAGC--AAAAGTACTAAGCACACACACAC--ATA----------------------------------CACATAAACACAC--AC-------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACACACACAC----------------------CATCTGCCGAGTGCGGAGTTGAGC-GAGTG---------AGCGTGTATA----------------------------------------------TAGAGG-CCT-TGTG------CACA----TATCACGTATACGTATACG-TA-----------------------------------------------------------------------TACGC---A---------TGGCCCA---TCGTGGT-ATTTAAA----------------------------------------------AG-TCGACAG-------------------------------------------------------C------C-------------------AC---------------------GGCC---SizeHit CountTotal NormTotal
No Reads
droRho1
GCC--GAATAAAACA---TAGCGACGGCC----TAGGTGAACAGTGGAA-AAA-CAAGC--AAAAGTACTAAGCACACACTCAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCCGAGTGCGGAGTTGAGC-GAGTG---------AGCGTGTATA----------------------------------------------TAG-GG-CCT-TGTG------CACA----TATCACGTATACGT---------------------------------------------------------------------------------------ATGTCGATACTGGCCCA---TCGTGGT-ATTCAAA----------------------------------------------AG-TCGACGAA------------------------------------------------------A------G------------------------------------------G-GCCACSizeHit CountTotal NormTotal
No Reads
droFic1
GCC--GAATAAAACA---TAGCGACGGCC----TAGGTGAAAAGTGGAA-AAGCAAAGC--AAAAGTATTAAGCACACACA--CT-------------------------------GGCAGGGCGCACGCACACAC--ACA-------------------------------------------------------------------------------------------------------------------------------------------------CGCAAAAATTCGCACAAAGTCGCACACACAC-ACAGCAG------------CAGCAGGCGAGTGCGGAGTTGAGC-GAGTG---------AGCGAGTACA----------------------------------------------TAGGGG-CCT-GGTG------CACA----TATCACGTATACGT---------------------------------------------------------------------------------------ATGTCGATTCTGGCCCG---TCGTGGT-GTTTAAA----------------------------------------------AA-TCGACGAA------------------------------------------------------AA-----G------------------------------------------C-CACGGSizeHit CountTotal NormTotal
No Reads
droKik1
GCC--GAATAAAACA---TAGCGACGGC-GGCCTAGGTGCAAAGTGAAA-------ACC--AAAAGTACTAAGCACACACACAC--ACACA-------------------------CACAGAGACCACGCACGCAC--ACATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------GTACACAT----------CATAGCACAGCGAAGCAGGCGAGTGTCGAGCAGAGCAGAGTCACTAACTACAGTGTGTATA----------------------------------------------TAAAGGGCTT-TAGG------CACA----TATCACGTATACGTA-------GGCCCCCTTAAAGTCCAGGAATAAG------------------------------------------------------------------------------------ACAAA-------------A--------------AACAACAGAATAAATAAATA-TGGC-----------------AGCAGAT----------------------------------C------G------------------------------------------G-CCCTCSizeHit CountTotal NormTotal
No Reads
droAna3
GCC--GAATGAAACA---TGGCGACGGCC----TAGGTGTAAAGTGGAA-AAC-CA-----AAAAGTATTAAGCACACATACACACACACACACTGGGCCC------------------------TACACACTCACAAACAG---ACACGCACACACACACACATACATA--------------------------------------------------------------------------------------------------------------------------------------------------------CAGTGGA------------AAGCGAGTGCGGAGTTGAGC-GAGTA---------TACGTGTACA----------------------------------------------TAACGG-TCTCTATGCATATT-------------CG-----------------C-----------------------------------------------------------------------------------------CTCC---TTATGGTTATTCAA---ACAGAA----AAA-----------------AC----TGGTTAAAAA-CGGA-----------------AACATC-----------------------------------AAACCCCA------------------------------------------G-TCCGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
GCC--GAATGAAACA---TGGCGACGGTC----TAGGTGTAAAGTGGAA-AAC-CA-----AAAAGTATTAAGCACACACACCC--GTACACCCTGGGCCC------------------------TACACACTCACACACTG---CCATACACAC--------------------------------------------------------------------------------------------------------------------------------------------------ACACTCACACACACACTAAAACAGTGGA------------AAGCGAGTGCGGAGTTGAGC-GAGTA---------AACGTGTACA----------------------------------------------TAACGG-CCTCTATGCATATT-------------CG-----------------C-----------------------------------------------------------------------------------------CTCC---TTATGGTTATTCAA---ACAAA------AA-----------------AC----TGGTTAAAAA-TGGA-----------------AACATA-----------------------------------AA-----A------------------------------------------G-C-CCASizeHit CountTotal NormTotal
No Reads
dp5
GCC--GAATAAAACA---TAGTCACGGCCTGCCTGGGCGGAAAGTGGAA-AAC-----C--AAAAGTATTAAAAAAGCACACAC--CTA----------------------------------TACACAAGCACAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACTCACACACGCACATGTGCGTTCTACC--------------------GTGGCTGTGT-GAGTG---------AGCGTGTGCACAAGTGCATTACATACTGGTACATTATGTACGAGTATGTTTGCACA----------TTGTACATATA-------------CGTATACGT---------------------------------------------------------------------------------------A-------------TAC---GAATACATATACAT---ACAGAT------GTAGGCCCAGGCTTAAC---------------AA-TAAAATAAAACGCAAATCGGGAGCAAATCGCGAGCCCACTACGCACACATCACAGATCACAGT------G------------------------------------------G-CCCAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
GCC--GAATAAAACA---TAGTCACGGCCTGCCTGGGCGGAAAGTGGAA-AAC-----C--AAAAGTATTAAAAAAGCACACAC--CTA----------------------------------TACACAGGCACAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACTCACACACGCACATGTGCGTTCTACC--------------------GTGGCTGTGT-GAGTG---------AGCGTGTGCACAAGTGCATTACATACTGGTACATTATGTACGAGTATGTTTGCACA----------TTGTACATATA-------------CGTATACGT-------------------------------------------------------------------------------------------------------------ATACATATACAT---ACAGAT------GTAGGCCCAGGCTTAAC---------------AA-TAAAATAAAACGCAAATCGGGAGCAAATCGCGAGCCCACTACGCACACATCACAGATCACAGT------GGCCCAAAAACCCCCTACCCACCGCCAATCCGTTCTTCCACCGT-TCCGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................................................................................................................................................................CTGTGT-GAGTG---------AGCGTGTGC............................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTTTGCACA----------TTGTACAT...........................................................................................................................................................................................................................................................................................................................2011.001010000
droWil2
GCA--A-----ATCC---TTGC---------------------------------------------------CACGCACACAC--ACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAC-------A---------------------------------------------------------------CACACACAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
GCCCCGTATTAAATACCATTGCGAAAGTA------------AAGTGC----------AC--AAAAGTATTAAATAAAAAAAAAA--ATAAAAAAAAATACCAGCACATACGTACATGCCAGTGTGTGCGTGTGTGT--ATAT-----------------------------GTGT-----------------GTGTGTGTGTGTG-TGTACATTATATGCCTGAAAACGGACGCTGCGTAACAGAAATAATATACATATAAATACATAAACACACACACAC--------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC---------------------------------ACA------------------------------------------------GA-CAGATGCA------------------------------------------------------C------T------------------------------------------G-CTCGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............ACCATTGCGAAAGTA------------AAGTGC----------AC--AA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000010000000000000000000000000000000000000000000
..............ACCATTGCGAAAGTA------------AAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................CACACACAC--------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC---------------------------------ACA------------------------------------------------GA-CAG....................................................................................................................2180.504040000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................ATAT-----------------------------GTGT-----------------GTGTGTGTGTGTG-T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.255000000000000000000000000000000000000000000000000000000000000050
................................................................................................................................GTGTGTGT--ATAT-----------------------------GTGT-----------------GTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
........................................................................................................................................................................................................................................................................CATAAACACACACACAC--------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.................................................................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................CACACACACAC--------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC---------------------------------ACA------------------------------------------------GA-CA.....................................................................................................................22200.051000000000000000000000000100000000000000000000000000000000000000
droMoj3
GTA-----------------------------------------------------------CTCGTACTAATGA-----------------------------------------------------------------------------------------------------------------------------------------------GCC--------------------------------------------------ACACACACACACACACGCACA------C--ACAGACAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCGCAGTCAAGGA-GTGCAAA----------------------------------------------AA------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GCC--GAATAAAATACTATATCGA------------AAGCAAAGTGCACCCGC-AAAGC--AAAAGTATTAAATAAA------AT-------------------------------ACCAGCACATACGCCTATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACA----------------------------TGTGTGTGCCTATGTGT-GTGTG---------TGTGTGTGTG----------------------------------------------TGAGTG-CG--TATA------TATA----TATTATATACATGGG-------ATTCACACTCTAATC---AAATAAAATAAAATATGAAAAAAAAACAAAAGGCGCACACAAACACACACACACACACAC-ATAGAGAGAACCACTCACA--GACAGT-ATTTGCAATGCA--CTGCAA-------------------------G-------AAAACTAGAGG------------------------------------------------------C------A------------------------------------------G-CAGTASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 09:59 PM