ID:

dsi_2461

Coordinate:

3l:16097084-16097161 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

ACGGAGGATATGTCTTCATCCTAACCATTGCCACCCAAATCGCCGTCTTTGTGATGATACTGTAAGTGATTCCGCGATGTGACTCTTATTTATTTTATTAATTATTTAATTGATCTAATACTATTAGTTGCATACACATTGTTTTGGGCAAAAATTCACTGGCTGTTCCGGAAGTTCC ************************************************(((((((((..((((((((...(((...)))....))))))))..))))).)))).......................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	M023 head	M024 male body	M053 female body
..........................................................................................................................................TTGTTTTGGGCAAAAATTCACTGGC...............	25	0	1	2.00	2	0	0	1	0	0	0	0	1
........................................CGCCGTCTTTGTGATGATACTTTGC.................................................................................................................	25	3	1	1.00	1	0	1	0	0	0	0	0	0
...............................CACCCAAATCGCCGTCTTTG...............................................................................................................................	20	0	1	1.00	1	0	0	0	0	0	1	0	0
.................................................TGTGATGACACTGTAAGCGAA............................................................................................................	21	3	1	1.00	1	0	0	0	1	0	0	0	0
...........................TTGCCACCCAAATCGCCGTCTTTGT..............................................................................................................................	25	0	1	1.00	1	0	1	0	0	0	0	0	0
................................................................................................................................TGCATACACATTGTTTTGGGCAAAAA........................	26	0	1	1.00	1	0	0	1	0	0	0	0	0
...............................................................................................................................................TTGGGCAAAAATTCACTGGCT..............	21	0	1	1.00	1	0	0	0	0	0	0	1	0
..............................................................................................................................................TTTGGGCAAAAATTCACTGGCTGTTCC.........	27	0	1	1.00	1	1	0	0	0	0	0	0	0
....................................................................................................................................TACACATTGTTTTGGGCAAAAATT......................	24	0	1	1.00	1	0	0	0	0	1	0	0	0
............................................GTCTTAGTGATGATGATGTAAGTGAT............................................................................................................	26	3	1	1.00	1	1	0	0	0	0	0	0	0
.......................ACCATTGCCACCCAAATCGCCGTCTT.................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0
.............................................TCTTTGTGATTTTACTGTATG................................................................................................................	21	3	9	0.11	1	0	1	0	0	0	0	0	0
...................................................TGACGATACTGTAGGGGA.............................................................................................................	18	3	20	0.10	2	0	0	1	0	1	0	0	0
....................................................................................................................AATACTATTAGTTGAAGA............................................	18	2	10	0.10	1	0	0	0	1	0	0	0	0
.............................................................................TCTGACTCTTTTTTATTATAT................................................................................	21	3	20	0.05	1	0	0	0	0	1	0	0	0

Anti-sense strand reads

TGCCTCCTATACAGAAGTAGGATTGGTAACGGTGGGTTTAGCGGCAGAAACACTACTATGACATTCACTAAGGCGCTACACTGAGAATAAATAAAATAATTAATAAATTAACTAGATTATGATAATCAACGTATGTGTAACAAAACCCGTTTTTAAGTGACCGACAAGGCCTTCAAGG ************************************************(((((((((..((((((((...(((...)))....))))))))..))))).)))).......................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	M053 female body	SRR902009 testis	M025 embryo	SRR618934 dsim w501 ovaries
................................TGGGTTTAGCGGCAGAAACAC.............................................................................................................................	21	0	1	1.00	1	0	1	0	0	0
............................................................................................................................................CAAAACAGGTTTTTAAGGGAC.................	21	3	7	0.57	4	3	0	0	1	0
.................................................ACACTAGTATGACCTTCA...............................................................................................................	18	2	3	0.33	1	1	0	0	0	0
...........................................................................................................................................ACAAAACAGGTTTTTAAGGGAC.................	22	3	4	0.25	1	1	0	0	0	0
....................................TTTAGCGGGAGAAACATGACT.........................................................................................................................	21	3	6	0.17	1	0	0	1	0	0
.............................................AGAAGCACTACTATG......................................................................................................................	15	1	8	0.13	1	0	0	0	0	1
............................................................................................................................................CAAAACAAGTTTTTAAGGGAC.................	21	3	14	0.07	1	1	0	0	0	0
.........TGCAGAAGTGGGATTAGTA......................................................................................................................................................	19	3	17	0.06	1	0	1	0	0	0

Generated: 04/24/2015 at 01:54 AM