ID:

dsi_24608

 Coordinate:

3l:2135463-2135683 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.7 -15.6 -15.5

Flybase annnotation

five_prime_UTR [3l_2135353_2135756_+]; exon [3l_2135353_2135756_+]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

#################################################################################################################################################################################################################################################################################################################################
ATTAAGTCGGACAGAATCGAATCGGGGCGAGCGCTTATCGCGGCAAAAGAGTAATTTGTGATACCTGTCCGCCGTGTATTGGCTTGTTGGAGCGCTACGCGCTTAAGTGGTGTTAATTTTTTATTAATTATTATCGTATTTATTACCCAACGAAAGTGAAGTGCGAAATCGGTCGCCTCAAGTGCCCGGCCGTACGTGCAAAGCCCGTAAATAAATTACACAGCCATATAGCCCTGATCCTTACCTCCACACTCGCTCTCGCCCATTGCAGCTGATAATGCAGACGAAGTCCGCCTGATCGATTCCCATTCCCATTTTGAT
**************************************************************.((.....((((.....)))).....))(((((...)))))....(((((.(((((.......))))).))))).....************************************************************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 M025
embryo
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
..TAAGTCGGACGGGAACGAATC.......................................................................................................................................................................................................................................................................................................... 21 3 1 2.00 2 0 2 0 0 0 0 0 0 0
..............................................................ACCTGTCCGCCGTGTATTG................................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................AGACGAAGTCCGCCTGATCGAC.................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.......CGGACAGAATCGAATCGGGGCGA................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................TTATTAATTATTATCGTATTT.................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................AACGAAAGTGAAGTGCGAAATCGGTC................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..................................................GTAATTTGTGATACCTGTCCGCCGT...................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.TTAAGTCGGACGGGAACGAATC.......................................................................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0
..TAAGTCGGACAGAATCGAATCGGGGC..................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ACACAGCCATATAGCCCTGATCCTTACCT........................................................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................GTACGTGAGAAGACCGTAAA.............................................................................................................. 20 3 3 0.33 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................GCCGGACGTGCAAGGCTCG.................................................................................................................. 19 3 3 0.33 1 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................CGAAATCGGCCGCTTCAA............................................................................................................................................ 18 2 5 0.20 1 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................................................................................................CCAAGTCCTCCTGATCGA................... 18 2 7 0.14 1 0 0 0 0 0 1 0 0 0
..............AATCGACTCGGGGCG.................................................................................................................................................................................................................................................................................................... 15 1 10 0.10 1 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................................................................................AGTCCTCCTGATCGA................... 15 1 12 0.08 1 0 0 0 0 0 0 0 0 1
...................................................................................................................................................................................................................................................................................................CGCCGGTTCGATTCCCA............. 17 2 15 0.07 1 0 0 0 0 0 0 0 0 1
...........CAGAATCGGATCGGTGC..................................................................................................................................................................................................................................................................................................... 17 2 15 0.07 1 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................................................................................TGTTGACGAAGTCCGCC.......................... 17 2 18 0.06 1 0 0 0 0 0 0 0 1 0
.................................................................................GCCTGGTAGAGCGCTACG.............................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TAATTCAGCCTGTCTTAGCTTAGCCCCGCTCGCGAATAGCGCCGTTTTCTCATTAAACACTATGGACAGGCGGCACATAACCGAACAACCTCGCGATGCGCGAATTCACCACAATTAAAAAATAATTAATAATAGCATAAATAATGGGTTGCTTTCACTTCACGCTTTAGCCAGCGGAGTTCACGGGCCGGCATGCACGTTTCGGGCATTTATTTAATGTGTCGGTATATCGGGACTAGGAATGGAGGTGTGAGCGAGAGCGGGTAACGTCGACTATTACGTCTGCTTCAGGCGGACTAGCTAAGGGTAAGGGTAAAACTA
************************************************************************************************************************************************************************************.((.....((((.....)))).....))(((((...)))))....(((((.(((((.......))))).))))).....************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
...............................................................................................................................................................................................................................................................................................................AGGGTAAGGGTAAAA... 15 0 10 2.10 21 21 0 0 0 0 0 0 0
..ATTCAGCCTGCCCTTGCTTAG.......................................................................................................................................................................................................................................................................................................... 21 3 1 2.00 2 0 2 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................TTCAGGCGGACTACGTCAGGGT............. 22 3 3 1.00 3 0 0 3 0 0 0 0 0
................................................................................................................................................TGGGTTGCTTTCACTTCACG............................................................................................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................GGCATTTATTTAATGTGTCGGT............................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................AAGGGTAAGGGTAAAA... 16 0 9 0.78 7 7 0 0 0 0 0 0 0
.................................................................................................................................................................................GGTGCACGGGCCGGCATG.............................................................................................................................. 18 2 2 0.50 1 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................GGTGCCGGTATGTCGGGACT.................................................................................... 20 3 2 0.50 1 0 0 0 1 0 0 0 0
.................................................................................................................................................................................AGTGCACAGGCCGGCATG.............................................................................................................................. 18 2 3 0.33 1 0 0 0 0 1 0 0 0
........................................................................................................................................................................AGCCGGCGGAGTTCACG........................................................................................................................................ 17 1 3 0.33 1 1 0 0 0 0 0 0 0
........CCTGTCTTAGCTTTGC......................................................................................................................................................................................................................................................................................................... 16 1 3 0.33 1 0 1 0 0 0 0 0 0
........................................................................................................................................................................AGCCGGCAGAGTTCACGGCCC.................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0
...TTCAGCCTGCCCTTGCTTAG.......................................................................................................................................................................................................................................................................................................... 20 3 4 0.25 1 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................TATTAGGTCTGCTTCAAG............................. 18 2 5 0.20 1 0 0 0 0 0 1 0 0
................................................................................................................................................................CAGGCTTTGGCCAGC.................................................................................................................................................. 15 2 20 0.20 4 0 0 0 0 2 2 0 0
...........................................................................................................................................................................................................................................CCAGGAATGGTGGTTTGAGC.................................................................. 20 3 5 0.20 1 0 0 0 0 0 0 1 0
...................................................TTTAAATACTATGGACAG............................................................................................................................................................................................................................................................ 18 2 6 0.17 1 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................................................................................................AGGGTAAGGGTAAAAC.. 16 0 6 0.17 1 0 0 0 0 0 0 0 1
..............................................................................................................................................................TGCAAGCTTTAGTCAGCG................................................................................................................................................. 18 3 20 0.15 3 0 0 0 0 3 0 0 0
.................................................................................................................................................................ACGGTTTGGCCAGCGGA............................................................................................................................................... 17 2 9 0.11 1 0 1 0 0 0 0 0 0
....TCAGCCTGCCCTTGCTTAG.......................................................................................................................................................................................................................................................................................................... 19 3 10 0.10 1 0 1 0 0 0 0 0 0
........................................................................................................................................................................AGCCGGCGGAGTTCA.......................................................................................................................................... 15 1 13 0.08 1 1 0 0 0 0 0 0 0
...............................................................................................ATGCGCGAATACATCA.................................................................................................................................................................................................................. 16 2 20 0.05 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................TTCACTTGAGGCTTTAG....................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 1 0 0
...........GTCTTAGCTTGGCCCA...................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:2135413-2135733 + dsi_24608 ATTAAGTC-----G------GA--CAG------------------AATCGA-AT----------CGGGG--CGAGCG-CTTATCG----CGGC--------------AAAAGAGTAATTTGTGATACCTGTCCGCC---GTGTATTGGCTTGTT-GG----AG-CGC--TACGCGCTTAAGTGGTGTTAATTT-TTTATTAATTATTATCGTATTTATT-ACC---CAA--CGAAAGTGAAGTGCG-A---AAT-------------------------------CGGTCG--CCTCAAGTGCC--C-------GGCCGTA-----------CGTGC-AAAGCCCGTAAATAAA--------TTACACAGCCATAT--AGCC-CTGATCCTTACC-------------------------------------------------------------------TCCACA-CT-C--GCT-----------------------------------------------CTCGC-CCATT---GCAG---CTGATAATGCAGA----CGAAGTCCGCCTGATCGATTCCCATTCCCAT---------------------------TT-TGAT
droSec2 scaffold_2:2263416-2263736 + ATTAAGTC-----G------GA--CAG------------------AATCGA-AT----------CGGGG--CGAGCG-CTTATCG----CGGC--------------AAAAGAGTAATTTGTGATACCTGTCCGCA---GTGTATTGGCTTGTT-GG----AG-CGC--TACGCGCTTAAGTGGTGTTAATTT-TTTATTAATTATTATCGTATTTATT-ACC---CCA--CGAAAGTGAAGTGCG-A---AAT-------------------------------CGGTCG--CCTCAAGTGCC--C-------GACCGTA-----------CGTGC-AAAGCCCGTAAATAAA--------TTACACAGCCATAT--AGTA-CTGATCCTTACC-------------------------------------------------------------------TCCACA-CT-C--GCT-----------------------------------------------CTCGC-CCACT---GCAG---CTGATAATGCAGA----CGAAGTCCGCCTGATCGATTCCCATTCCCAT---------------------------TT-TGAT
dm3 chr3L:2237670-2237990 + ATTAAGTC-----G------GA--CGG------------------AATCGA-AT----------CGGGG--CGAGCG-CTTATCG----CGGC--------------AAAAGAGTAATTTGTGATACCTGTCCGCC---GTGTATTGGCTTGTT-GG----AG-CGC--AACGCGCTTAAGTGGTGTTAATTT-TTTATTAATTATTATCGTATTTATT-ACC---CAA--CGAAAGTGAAGTGCG-A---AAT-------------------------------CGGTCG--CCTCAAGTGCC--C-------GGCCGTA-----------CGTGC-AAAGCCCGTAAATAAA--------TTACACAGCCATAT--AGCC-CTGATCCTTACC-------------------------------------------------------------------TCTACA-CT-C--GCT-----------------------------------------------CTCGC-CCACC---GCAG---CTGATAATGCAGA----CGAATTCCGCCTGATCGATTCCCATTCCCAT---------------------------TT-CGAT
droEre2 scaffold_4784:2234354-2234668 + ATTAAGTC-----G------CA--CGG------------------AATCGA-AT----------CGGGG--CGAGCG-CTTATCG----CGGC--------------AAAAGAGTAATTTGTGATACCTGTCCGCC---GTGTATTGGCTTGTT-GG----AG-CGC--TACGCGCTTAAGTGGTGTTAATTT-TTTATTAATTATTATCGTATTTATT-ACT---CAA--CGAAAGTGAAGTGCG-A---AAT-------------------------------CGGTCG--CCTCAAGTGCC--C-------GTCCGTA-----------CGTGC-AAAGCCCGCAAATAAA--------TTACACAGCCATAT--AGCC-GTGGTCCTTCCC-------------------------------------------------------------------TTTACA-CT-C--G------------------------------------------------------CCCACT---GCAG---CTGATAATGCAGA----CGAAGTCCGCCTGATCGATCCCCATTCCGAT---------------------------TC-CGAT
droYak3 3L:2192195-2192533 + ATTAAGTC-----G------CA--CGG------------------AATCGA-AT----------CGGGG--CGAGCG-CTTATCG----CGGC--------------AAAAGAGTAATTTGTGATACCTGTCCGCC---GTGTATTGGCTTGTT-GG----AG-CGC--TACGCGCTTAAGTGGTGTTAATTT-TTTATTAATTATTATCGTATTTATT-ACT---CAA--CGAAAGTGAAGTGCG-A---AAT-------------------------------CGGTCG--CCTCAAGTGCC--C-------GTTCCTA-----------CGTGC-AAAGCCCGCAAATAAA--------TTACACAGCCATAT--AGCC-GTGATCCTTCCC-------------------------------------------------------------------TCTATA-CT-C--GCT-----------------------------------------------CTCGT-CCACT---GCAG---CTGATAATGCAGA----CGAAGTTCGCCTGATCGATTCCCATTCCCATTCCTATTCCG---ATTCCGA---T---TC-GGTT
droEug1 scf7180000409091:26556-26873 - GTTAAGTC-----G------GA--CGA-AAC------------GAAATCG----------GAATCGGGG--CGAGCG-CTTATCG----CGGC--------------AAAAGAGTAATTTGTGATACCTGTCAGCC---GTGTATTGGCTTGTT-GG----AG-CGC--TACGCGCTTAAGTGGTGTTAATTT-TTTATTAATTATTATCGTATTTATT-ACT---CAA--CGAAAGTGAAGTGCG-A---AAT-------------------------------CGGTCG--CCTCAAGTGCC--G-------GGCCATA-----------CGTGC-AAAGCCCGTAAATAAA--------TTACACAGCCATAT--AGCC-GTGATCCTTCCC-------------------------------------------------------------------TTTACC-CT-T--A------------------------------------------------------CCCACCGCCGCAG---CTGATAATGCAAA----CGGAGTCCGCCTGATCGATTT------CGTT---------------------------TT-GGAG
droBia1 scf7180000302428:8971643-8971971 + ATTAAGTC-----G------CC--TGA------------------AATCGAAAT----------CGGGG--CGAGCGCCTTATCG----CGGGTGA---AA-----AAAAAGAGTAATTTGTGATACCTGTCCGCC---GTGTATTGGCTTGTTCGC----CG-AGC--TACGCGCTTAAGTGGTGTTAATTT-TTTATTAATTATTATCGTATTTATT-ACT---CAA--CGAAAGTGAAGTGCC-A---AAT-------------------------------CGGCCG--CCTCAAGTGCC--C-------GGCCATA-----------CGTGC-AAAGCCCGTAAATAAA--------TTACCCAGCCATAT--AGCC-CTGATCCTTGCC-------------------------------------------------------------------TC----TTT----------------TCCGCCCT-----TCCATT-----------CCGGCACT------CTACT---GCAG---CTGATAATGCAAA----CGGACTTCGTCTGATTA--------------------------TAT------------TT-CGAT
droTak1 scf7180000414400:203078-203423 + GTTAACTC-----G------CT--GGG-----------------AAATCGAAAT----------CGGGAACGGAACGCCTTATCG----CGGCAGA----------GAAAAGAGTAATTTGTGATACCTGTCCGCCGTGTTGTATTGGCTTGTT-GA----AG-CGCTCTACGCGCTTAAGTGGTGTTAATTT-TTTATTAATTATTATCGTATTTATT-ACC---CAACGTGAAAGTGAAGTGCG-A---AAT-------------------------------CGGTCG--CCTCAAGTGCC--A-TTCGTTGGCCATA-----------CGTGC-AAAGCCCATAAATAAA--------TTACACAGCCATAT--AGCC-GTGATCCTTCC--------------------------------------------------------------------TC----TTTTT---------------C-----CCCACTTGTATTCCA-----TTCG-------------AAACT---GCAG---CTGATAATGCAAA----CGGACTCCGTCTGATCGATTTA---------------------TAT------------AT-TGGC
droEle1 scf7180000491249:3230475-3230772 - CCTCACTC-----G------AA--CGG-ACG------------GGAATAC---TTATGAGGAATCGGGG--CGAGTG-CTTATCG----CGGAAGAAG-AA-----AAAAAGAGTAATTTGTGATACCTGTCCGCC---GTGTATTGGCTTGTT-GA----AG-CGC--TACGCGCTTAAGTGGTGTTAATTT--TTATTAATTATTATCGTATTTATT-ACC---CAACGTGAAAGTGAAGTGCA-A---AAT-------------------------------CGCACGGTGCTCAAGTG----------------------------------C-AAAGCCCGTAAATAAA--------TTACACTGCCATATATAGCC-GTGATCCTTTTC---------------------------------------------------------------------------------------------------------------------------CGTT--------CAAATT---GCAA---CTGATAATGCAAA----CGGACTCCGTCTGA---------------------------------------------------
droRho1 scf7180000779532:40807-41113 - GCTCACTC-----G------CA--CGG------------------AATCGA-AT----------CGCGG--CGAACG-CTTATCG----CGGG--------------AAAAGAGTAATTTGTGATACCTGTCCGCC---GTGTATTGGCTTGTT-GG----AG-CGC--TACGCGCTTAAGTGGTGTTAATTT-TTTATTAATTATTATCGTATTTATT-ACC---CAA--CGAAAGTGAAGTGCG-A---AAT-------------------------------CGCTCGG-CCTCAAGTGCC--C-------GGCCATA-----------CGTGC-AAAGCCCGTAAATAAA--------TTACACAGCCATAT--AGCC-GTGATCCTTCTT-----------------------------------------------------------------CCCC----TTTTGCAACC-CACTCATC-------------------------------------------------------A---CTGATAATGCAAG----CGGACTCCGCCTGATCGAT---------------------------------------TT-GGAG
droFic1 scf7180000453052:817980-818302 - CCTATATCTTCACCCACGG-GG--CGG------------------AATCGA-AT-----CGAATCGGGG--CGAGTG-CTTATCG----CGGC--------------AAAAGAGTAATTTGTGATACCTGTCCGCC---GTGTATTGGCTTGTT-GG----AG-CGC--TACGCGCTTAAGTGGTGTTAATTT-TTTATTAATTATTATCGTATTTATT-ACT---CAA--CGAAAGTGAAGTGCG-A---AAT-------------------------------CGGTCG--CCTCAAGTGCC--C-------GGGCATA-----------CGTGC-AAAGCCCGTAAATAAA--------TTACACAGCCATAT--AGCC-GTGATCCTTCCCCCATTCC------------------------------------------------------ATT-----G-----------------------------------------CCAATCCGATT-------------CCGACT---GCAG---CTGATAATGCCAACAA-CGGACTCCGCCTGAT--------------------------------------------------
droKik1 scf7180000302441:1548915-1549215 - ATT--GTG-----G------GA--CGG------------------AATCGA-AT-----GGAATCGGGG--CGAGCG-CTTATCG----CGGTGGCAGCAAACAGCAAAAAGAGTAATTTGTGATACCTGTCCGCC---GTGTATTGGCTTGTT-CG----AG-CGC--TACGCGCTTAAGTGGTGTTAATTT-TGTATTAATTATTATCGTATTTATT-GGC---CAGCGTGAAAGTGAAGTGCT-G---AAG-------------------------------CA--AG--CCTCAAGTGCA--G-------CGCCATA------------------GAGCCAATAAATAAA--------TTACACGGCCATATAAAGCCAGTGATCCTTTGC--------------------------------------------------------------------------------------CTGAT--C-----CCCAGTTG----CCA-----TTC-------------CAAACT---GCAG---CTGATAATGCTG----------------------------------------------------------------------
droAna3 scaffold_13337:600137-600418 - GTTACGGG-----G------GA--CGGCGAC------------GAAATCGA-AT----------CGGGG--CGAGCG-CTTATCG----CGCCAGA----------AAAAAGAGTAATTTGTGATACCTGTCC-CC---GAGTATTGGCTTGTT-GG----AG-CGC--TACGAGCTTAAGTGGTGTTAATTT-TTTATTAATTATTATCGTATTTATT-GGC---AAC--CGAAAGTCGAGTGCG-A---AAA-------------------------------CGG------CTCAAGTGCTCTC-------GGC---------------CGTGC-TAAGCCAATAAATAAA--------TTACACAGCCATAT--AGCC-GTGATCCTTCCC-------------------------------------------------------------------A-------------------------------------------------------------------CCAATT---GCAG---CTGATAATGCACA----CGGACTTT-------------------------------------------------------AT
droBip1 scf7180000395155:160524-160813 + GTAGCGGG-----------GTA--CGGCGAC------------GAAATCGA-AT----------CGGGG--CGAGTG-CTTATCG----CGCCAGA---AA-----AAAAAGAGTAATTTGTGATACCTGTCCGTT---GAATATTGGCTTGTT-GG----AG-CGC--TACGCGCTTAAGTGGTATTAATTT-TTTATTAATTATTATCGTATTTATT-GCC---AAC--CGAAAGTGGAGTGCG-A---AAA----------------------------------ACG--ACTCAAGTGCTCTC-------GGCCATA-----------CGTGC-TAAGCCAATAAATAAA--------TTACACAGCCATAT--AGCC-GTGATCCTTCCC-------------------------------------------------------------------A-------------------------------------------------------------------CCAATT---GCAA---CTGATAATGCACA----CGGACTTT-------------------------------------------------------AT
dp5 XR_group6:12159090-12159439 + ACTGGC-------------GTAAGCCTCAAC------------GAGCAGCA-AT----------C-------GACCG-CTTATCAGCCCTTGC--------------CAAAGAGTAATTTGTGATACCTGTCCGCCTT-GTGTATTGGCTTGTTTAG----AG-CGC--AACGCGCTTAAGTGGTGTTAATTT-TTCAGTAATTATTATCGTATTTATT-GCC---GAA--CGAAAGTGAAGTGCG-ATCGAACCCTC---------CGCTTCCTCCGCCCCCACCGCTC---CGTCCAGTGCC--G-TGT---GTCCGTC-----------CGTGCGAATGGCAATAAATGAA--------TTACAGAGCCATAA--AGTT-GT------------------------------------------------------------------------------------------------CTGATCAGCGTGGT-----CGGGTT-----------GCGGTCGTCTCGGCCAACT---GCAG---CTGATAATGGACA--TGGGAAGTCTACGTG------------------------------------------TGTG--TGCA
droPer2 scaffold_33:182229-182587 + ACTGGC-------------GTAAGCCTCAAC------------GAGCAGCA-AT----------C-------GACCG-CTTATCAGCCCTTGC--------------CAAAGAGTAATTTGTGATACCTGTCCGCCTT-GTGTATTGGCTTGTTTAG----AG-CGC--AACGCGCTTAAGTGGTGTTAATTT-TTCAGTAATTATTATCGTATTTATT-GCC---GAA--CGAAAGTGAAGTGCG-ATCGAACCCTCCGCTGCCTCCGCTTCCTCCGCCCCCACCGCTC---CGTCCAGTGCC--G-TGT---GTCCGTC-----------CGTGCGAAAGGCAATAAATGAA--------TTACAGAGCCATAA--AGTT-GT------------------------------------------------------------------------------------------------CTGATCAGCGTGGT-----CGGGTT-----------GCGGTCGTCTCGGCCAACT---GCAG---CTGATAATGGACA--TGGGAAGTCTACGTG------------------------------------------TGTG--TGCA
droWil2 scf2_1100000004729:1124403-1124644 - G-------------------------------------------------------------------------------------------C--------------CAAAGAGTAATTTGTGATACCTGTCCGTTATATTGTATTGACTTGTA-GC----AGTCGC--AACGAGCTTAAGTGGTGTTAATTT-TTTATTAATTATTATCGTATTTATTTAACCA-GAA--CGAAAGTGAAGTGCG-A---ATT--------------------------------G--CA--TTTCAAGTGTT--T-------CGACATTAACCTAACTGGCATG--AAAGGCAATAAACAA---------TTGTG---------------------------------------------------------------------------------------------CATC----GGT-G--G-TC---T-----------------------------------------------GCAATG---GCAG----AGATAAAGTAAT----CAAACACC--------------------CAA---------------------------GC-TGGC
droVir3 scaffold_13049:11872643-11872979 - GCTCAGTT-----G------AG--CAGCAATAGCCGTAACCGT-CGCTGG----------CAATCGA----CG-ACG-CTTATCAGC-TTTGC--------------CAAAGAGTAATTTGTGATACCTGTCCGTT---TTGTATTGGTTTGTA-GC----AG-CGC--GACGAGCTTAAGTGGTGTTAATTT--TTATTAATTATTATCGTGTTTATT-GC----CAA--CGAAAGTGAAGTGCGTG---AAT-------------------------------T---TA--TTTCAAGTGGT--TGTG----TGTTATTAAC--------CAGGC-AACCAC----AATAAATAAC----ATATCTATCCA-AA--ATCC-AAGAACAATCA--------------------------------------------------------------ATT-----G---------------------CAACACGGT-----CCAG----------TTTG-------------CAACT---GCAGCCACAGATAGGGCTTT----ACAAA------------------ATTCCTA------A-CAGGGTCT------------ATTGGTG
droMoj3 scaffold_6680:8956982-8957280 + ---------------------------------------------------------------------------CG-CTTATCAGC-TTTGC--------------CAAAGAGTAATTTGTGATACCTGTCCGTT---TTGTATTGGGTTGTA-GC----AG-CGC--GACGAGCTTAAGTGGTGTTAATTTTTTTATTAATTATTATCGTATTTATT-GC----CAA--CCAAAGTGAAGTGCG-A---ATT------------------------------------A--TTTCAAGTGTT--T-------TGCCATTAA-------------------CC----AATAAA--------TTACAAT-----A----CGC---GAAC-------------CAAACAAATTGCACATTACAAAATAACAACAACAATAAAGAAGCGAAAGAAGCAATTGCATC----GCT-C--GCTG---TGA---------------CCAG----------TGGG-------------C--------CAG----AGATAATA-----------------C-------GTTTTCGTACAAAT---------------------------TT-T-TT
droGri2 scaffold_15110:11318791-11319092 - ---------------------------------------------------------------------------CG-CTTATCAGC-TTTGC--------------CAAAGAGTAATTTGTGATACCTGTCCGTT---TTGTATTGGCTTGTA-GAGCGCAG-CGC--GACGAGCTTAAGTGGTGTTAATTT-TTTATTAATTATTATCGTGTTTATT-GCC-AGCAA--CGAAAGTGAAGTGCG-A---ATT------------------------------------A--CTTCAAGTGCTC-T-------GTCCATTAA-------------C-CATTCCAGTAAC-AA-----TAAATTACAAA---------AGTT-AAGAAC---------------------------------------------------------------AGCAGCTGCCTT----TTT-T--G---------------TTGT-----CCAG----------TTTG-------------CAAAT---GCAACCTCAGATAATGGTTA----AGAAATTT------------TCAATTTCTCT----ATATA---TATATGTATGTGTG----TGTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATTAAGTC-----G------GA--CAG------------------AATCGA-AT----------CGGGG--CGAGCG-CTTATCG----CGGC--------------AAAAGAGTAATTTGTGATACCTGTCCGCC---GTGTATTGGCTTGTT-GG----AG-CGC--TACGCGCTTAAGTGGTGTTAATTT-TTTATTAATTATTATCGTATTTATT-ACC---CAA--CGAAAGTGAAGTGCG-A---AAT-------------------------------CGGTCG--CCTCAAGTGCC--C-------GGCCGTA-----------CGTGC-AAAGCCCGTAAATAAA--------TTACACAGCCATAT--AGCC-CTGATCCTTACC-------------------------------------------------------------------TCCACA-CT-C--GCT-----------------------------------------------CTCGC-CCATT---GCAG---CTGATAATGCAGA----CGAAGTCCGCCTGATCGATTCCCATTCCCAT---------------------------TT-TGATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................ACCTGTCCGCC---GTGTATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA----CGAAGTCCGCCTGATCGAC..............................................2211.00101000000000000000
.......C-----G------GA--CAG------------------AATCGA-AT----------CGGGG--CGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
...................................................................................................................................................................................................TTATTAATTATTATCGTATTT............................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
...................................................................................................................................................................................................................................AA--CGAAAGTGAAGTGCG-A---AAT-------------------------------CGGTC..................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
.................................................................................................................GTAATTTGTGATACCTGTCCGCC---GT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
..TAAGTC-----G------GA--CAG------------------AATCGA-AT----------CGGGG--C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
............................................................................................................................................................................................................................................................................................................................................................................ACACAGCCATAT--AGCC-CTGATCCTTACC-------------------------------------------------------------------T.....................................................................................................................................................................2911.00100010000000000000
droSec2
ATTAAGTC-----G------GA--CAG------------------AATCGA-AT----------CGGGG--CGAGCG-CTTATCG----CGGC--------------AAAAGAGTAATTTGTGATACCTGTCCGCA---GTGTATTGGCTTGTT-GG----AG-CGC--TACGCGCTTAAGTGGTGTTAATTT-TTTATTAATTATTATCGTATTTATT-ACC---CCA--CGAAAGTGAAGTGCG-A---AAT-------------------------------CGGTCG--CCTCAAGTGCC--C-------GACCGTA-----------CGTGC-AAAGCCCGTAAATAAA--------TTACACAGCCATAT--AGTA-CTGATCCTTACC-------------------------------------------------------------------TCCACA-CT-C--GCT-----------------------------------------------CTCGC-CCACT---GCAG---CTGATAATGCAGA----CGAAGTCCGCCTGATCGATTCCCATTCCCAT---------------------------TT-TGATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................CG--CCTCAAGTGCC--C-------GACCGTA-----------CGT.....................................................................................................................................................................................................................................................................................................2411.0011000
....................GA--CAG------------------AATCGA-AT----------CGGGG--CGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
..............................................ATCGA-AT----------CGGGG--CGAGCG-CTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
................................................................................TATCG----CGGC--------------AAAAGAGTAATTTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
dm3
ATTAAGTC-----G------GA--CGG------------------AATCGA-AT----------CGGGG--CGAGCG-CTTATCG----CGGC--------------AAAAGAGTAATTTGTGATACCTGTCCGCC---GTGTATTGGCTTGTT-GG----AG-CGC--AACGCGCTTAAGTGGTGTTAATTT-TTTATTAATTATTATCGTATTTATT-ACC---CAA--CGAAAGTGAAGTGCG-A---AAT-------------------------------CGGTCG--CCTCAAGTGCC--C-------GGCCGTA-----------CGTGC-AAAGCCCGTAAATAAA--------TTACACAGCCATAT--AGCC-CTGATCCTTACC-------------------------------------------------------------------TCTACA-CT-C--GCT-----------------------------------------------CTCGC-CCACC---GCAG---CTGATAATGCAGA----CGAATTCCGCCTGATCGATTCCCATTCCCAT---------------------------TT-CGATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATAATGCAGA----CGAATTCCGCCTGA...................................................2711.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................CC---CAA--CGAAAGTGAAGTGCG-A---AA.......................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................GTGATACCTGTCCGCC---GTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................TATT-ACC---CAA--CGAAAGTGAAGTGC...............................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GG------------------AATCGA-AT----------CGGGG--CGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................ATTTGTGATACCTGTCCGCC---.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................AAGTGGTGTTAATTT-TTTATTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CGG------------------AATCGA-AT----------CGGGG--CGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................GTAATTTGTGATACCTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA----CGAATTCCGCCTGATCGA...............................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................CCGCC---GTGTATTGGCTTGTT-GG----AG-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.....GTC-----G------GA--CGG------------------AATCGA-AT----------C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................ATACCTGTCCGCC---GTGTATTGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................CACAGCCATAT--AGCC-CTGATCCTT............................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................ATCGA-AT----------CGGGG--CGAGCG-CT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................ATT-ACC---CAA--CGAAAGTGAAGTG................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................CGGTCG--CCTCAAGTGCC--C-------GGCC......................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ATTAAGTC-----G------CA--CGG------------------AATCGA-AT----------CGGGG--CGAGCG-CTTATCG----CGGC--------------AAAAGAGTAATTTGTGATACCTGTCCGCC---GTGTATTGGCTTGTT-GG----AG-CGC--TACGCGCTTAAGTGGTGTTAATTT-TTTATTAATTATTATCGTATTTATT-ACT---CAA--CGAAAGTGAAGTGCG-A---AAT-------------------------------CGGTCG--CCTCAAGTGCC--C-------GTCCGTA-----------CGTGC-AAAGCCCGCAAATAAA--------TTACACAGCCATAT--AGCC-GTGGTCCTTCCC-------------------------------------------------------------------TTTACA-CT-C--G------------------------------------------------------CCCACT---GCAG---CTGATAATGCAGA----CGAAGTCCGCCTGATCGATCCCCATTCCGAT---------------------------TC-CGATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................AATTTGTGATACCTGTCCGCC---.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
.....................................................................................................................................................................................................................................................G-A---AAT-------------------------------CGGTCG--CCTCAAGTGCC--C-------..........................................................................................................................................................................................................................................................................................................................2311.0010100000
............................................................................................................................................................................................................................................GTGAAGTGCG-A---AAT-------------------------------CGGTCG--C..............................................................................................................................................................................................................................................................................................................................................2111.0010000100
..................................................................................................................................................................................................................................CAA--CGAAAGTGAAGTGCG-A---AAT-------------------------------CGGTC..................................................................................................................................................................................................................................................................................................................................................2711.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................TACACAGCCATAT--AGCC-GT...................................................................................................................................................................................................................................................1911.0010000100
...................................................................................................................................................................................................................................AA--CGAAAGTGAAGTGCG-A---AAT-------------------------------CGGT...................................................................................................................................................................................................................................................................................................................................................2511.0011000000
...................................................................................................................AATTTGTGATACCTGTCCGCC---GTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
..............................................................................................................................................................................................................................................GAAGTGCG-A---AAT-------------------------------CGGTCG--C..............................................................................................................................................................................................................................................................................................................................................1911.0010000100
droYak3
ATTAAGTC-----G------CA--CGG------------------AATCGA-AT----------CGGGG--CGAGCG-CTTATCG----CGGC--------------AAAAGAGTAATTTGTGATACCTGTCCGCC---GTGTATTGGCTTGTT-GG----AG-CGC--TACGCGCTTAAGTGGTGTTAATTT-TTTATTAATTATTATCGTATTTATT-ACT---CAA--CGAAAGTGAAGTGCG-A---AAT-------------------------------CGGTCG--CCTCAAGTGCC--C-------GTTCCTA-----------CGTGC-AAAGCCCGCAAATAAA--------TTACACAGCCATAT--AGCC-GTGATCCTTCCC-------------------------------------------------------------------TCTATA-CT-C--GCT-----------------------------------------------CTCGT-CCACT---GCAG---CTGATAATGCAGA----CGAAGTTCGCCTGATCGATTCCCATTCCCATTCCTATTCCG---ATTCCGA---T---TC-GGTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA----CGAAGTTCGCCTGATCGAT..............................................2212.00200000020000
.............................................................................................................................................................................................................................................................................................................................................................................................C-GTGATCCTTCCC-------------------------------------------------------------------TCTATA-CT-C--GC.......................................................................................................................................................2411.00101000000000
...........................................................................................................................................GTGTATTGGCTTGTT-GG----AG-CGC--T..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA----CGAAGTTCGCCTGATCG................................................1911.00110000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGT-CCACT---GCAG---CTGATA............................................................................1911.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGATTCCCATTCCCATTC................................2111.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................AGCCATAT--AGCC-GTGATCCTTCCC-------------------------------------------------------------------TCT...................................................................................................................................................................2711.00100000010000
.......................................................................................................................................................................................................................................CGAAAGTGAAGTGCG-A---AAT-------------------------------C......................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
.................................................................................................................................GTCCGCC---GTGTATTGGCTTGTT-GG----AG-CG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
.......................................................................................................................................C---GTGTATTGGCTTGTT-GG----A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
....................................................................................................................................................................................................................ATTTATT-ACT---CAA--CGAAAGT......................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.......................................................................................................................................C---GTGTATTGGCTTGTT-GG----AG-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
....................................................................................................................ATTTGTGATACCTGTCCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
..................................................................................................................................................................................................................................CAA--CGAAAGTGAAGTGCG-A---AAT-------------------------------CGGTCG--C..............................................................................................................................................................................................................................................................................................................................................2911.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-CT-C--GCT-----------------------------------------------CTCGT-CCACT---GCA......................................................................................2011.00101000000000
droEug1
GTTAAGTC-----G------GA--CGA-AAC------------GAAATCG----------GAATCGGGG--CGAGCG-CTTATCG----CGGC--------------AAAAGAGTAATTTGTGATACCTGTCAGCC---GTGTATTGGCTTGTT-GG----AG-CGC--TACGCGCTTAAGTGGTGTTAATTT-TTTATTAATTATTATCGTATTTATT-ACT---CAA--CGAAAGTGAAGTGCG-A---AAT-------------------------------CGGTCG--CCTCAAGTGCC--G-------GGCCATA-----------CGTGC-AAAGCCCGTAAATAAA--------TTACACAGCCATAT--AGCC-GTGATCCTTCCC-------------------------------------------------------------------TTTACC-CT-T--A------------------------------------------------------CCCACCGCCGCAG---CTGATAATGCAAA----CGGAGTCCGCCTGATCGATTT------CGTT---------------------------TT-GGAGSizeHit CountTotal NormTotal
No Reads
droBia1
ATTAAGTC-----G------CC--TGA------------------AATCGAAAT----------CGGGG--CGAGCGCCTTATCG----CGGGTGA---AA-----AAAAAGAGTAATTTGTGATACCTGTCCGCC---GTGTATTGGCTTGTTCGC----CG-AGC--TACGCGCTTAAGTGGTGTTAATTT-TTTATTAATTATTATCGTATTTATT-ACT---CAA--CGAAAGTGAAGTGCC-A---AAT-------------------------------CGGCCG--CCTCAAGTGCC--C-------GGCCATA-----------CGTGC-AAAGCCCGTAAATAAA--------TTACCCAGCCATAT--AGCC-CTGATCCTTGCC-------------------------------------------------------------------TC----TTT----------------TCCGCCCT-----TCCATT-----------CCGGCACT------CTACT---GCAG---CTGATAATGCAAA----CGGACTTCGTCTGATTA--------------------------TAT------------TT-CGATSizeHit CountTotal NormTotal
No Reads
droTak1
GTTAACTC-----G------CT--GGG-----------------AAATCGAAAT----------CGGGAACGGAACGCCTTATCG----CGGCAGA----------GAAAAGAGTAATTTGTGATACCTGTCCGCCGTGTTGTATTGGCTTGTT-GA----AG-CGCTCTACGCGCTTAAGTGGTGTTAATTT-TTTATTAATTATTATCGTATTTATT-ACC---CAACGTGAAAGTGAAGTGCG-A---AAT-------------------------------CGGTCG--CCTCAAGTGCC--A-TTCGTTGGCCATA-----------CGTGC-AAAGCCCATAAATAAA--------TTACACAGCCATAT--AGCC-GTGATCCTTCC--------------------------------------------------------------------TC----TTTTT---------------C-----CCCACTTGTATTCCA-----TTCG-------------AAACT---GCAG---CTGATAATGCAAA----CGGACTCCGTCTGATCGATTTA---------------------TAT------------AT-TGGCSizeHit CountTotal NormTotal
No Reads
droEle1
CCTCACTC-----G------AA--CGG-ACG------------GGAATAC---TTATGAGGAATCGGGG--CGAGTG-CTTATCG----CGGAAGAAG-AA-----AAAAAGAGTAATTTGTGATACCTGTCCGCC---GTGTATTGGCTTGTT-GA----AG-CGC--TACGCGCTTAAGTGGTGTTAATTT--TTATTAATTATTATCGTATTTATT-ACC---CAACGTGAAAGTGAAGTGCA-A---AAT-------------------------------CGCACGGTGCTCAAGTG----------------------------------C-AAAGCCCGTAAATAAA--------TTACACTGCCATATATAGCC-GTGATCCTTTTC---------------------------------------------------------------------------------------------------------------------------CGTT--------CAAATT---GCAA---CTGATAATGCAAA----CGGACTCCGTCTGA---------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GCTCACTC-----G------CA--CGG------------------AATCGA-AT----------CGCGG--CGAACG-CTTATCG----CGGG--------------AAAAGAGTAATTTGTGATACCTGTCCGCC---GTGTATTGGCTTGTT-GG----AG-CGC--TACGCGCTTAAGTGGTGTTAATTT-TTTATTAATTATTATCGTATTTATT-ACC---CAA--CGAAAGTGAAGTGCG-A---AAT-------------------------------CGCTCGG-CCTCAAGTGCC--C-------GGCCATA-----------CGTGC-AAAGCCCGTAAATAAA--------TTACACAGCCATAT--AGCC-GTGATCCTTCTT-----------------------------------------------------------------CCCC----TTTTGCAACC-CACTCATC-------------------------------------------------------A---CTGATAATGCAAG----CGGACTCCGCCTGATCGAT---------------------------------------TT-GGAGSizeHit CountTotal NormTotal
No Reads
droFic1
CCTATATCTTCACCCACGG-GG--CGG------------------AATCGA-AT-----CGAATCGGGG--CGAGTG-CTTATCG----CGGC--------------AAAAGAGTAATTTGTGATACCTGTCCGCC---GTGTATTGGCTTGTT-GG----AG-CGC--TACGCGCTTAAGTGGTGTTAATTT-TTTATTAATTATTATCGTATTTATT-ACT---CAA--CGAAAGTGAAGTGCG-A---AAT-------------------------------CGGTCG--CCTCAAGTGCC--C-------GGGCATA-----------CGTGC-AAAGCCCGTAAATAAA--------TTACACAGCCATAT--AGCC-GTGATCCTTCCCCCATTCC------------------------------------------------------ATT-----G-----------------------------------------CCAATCCGATT-------------CCGACT---GCAG---CTGATAATGCCAACAA-CGGACTCCGCCTGAT--------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
ATT--GTG-----G------GA--CGG------------------AATCGA-AT-----GGAATCGGGG--CGAGCG-CTTATCG----CGGTGGCAGCAAACAGCAAAAAGAGTAATTTGTGATACCTGTCCGCC---GTGTATTGGCTTGTT-CG----AG-CGC--TACGCGCTTAAGTGGTGTTAATTT-TGTATTAATTATTATCGTATTTATT-GGC---CAGCGTGAAAGTGAAGTGCT-G---AAG-------------------------------CA--AG--CCTCAAGTGCA--G-------CGCCATA------------------GAGCCAATAAATAAA--------TTACACGGCCATATAAAGCCAGTGATCCTTTGC--------------------------------------------------------------------------------------CTGAT--C-----CCCAGTTG----CCA-----TTC-------------CAAACT---GCAG---CTGATAATGCTG----------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
GTTACGGG-----G------GA--CGGCGAC------------GAAATCGA-AT----------CGGGG--CGAGCG-CTTATCG----CGCCAGA----------AAAAAGAGTAATTTGTGATACCTGTCC-CC---GAGTATTGGCTTGTT-GG----AG-CGC--TACGAGCTTAAGTGGTGTTAATTT-TTTATTAATTATTATCGTATTTATT-GGC---AAC--CGAAAGTCGAGTGCG-A---AAA-------------------------------CGG------CTCAAGTGCTCTC-------GGC---------------CGTGC-TAAGCCAATAAATAAA--------TTACACAGCCATAT--AGCC-GTGATCCTTCCC-------------------------------------------------------------------A-------------------------------------------------------------------CCAATT---GCAG---CTGATAATGCACA----CGGACTTT-------------------------------------------------------ATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................GGC---AAC--CGAAAGTCGAGTGC...............................................................................................................................................................................................................................................................................................................................................................................................2013.003020010
................................................................................................................................................................................TTAAGTGGTGTTAATTT-TTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...............................................................................................................................................ATTGGCTTGTT-GG----AG-CGC--TACGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
....................GA--CGGCGAC------------GAAATCGA-AT----------CGGGG--C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
........................................................................................................................................................................................................................................................................................................CAAGTGCTCTC-------GGC---------------CGTGC-TAAGCCA...........................................................................................................................................................................................................................................................................................2611.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATGCACA----CGGACTTT-------------------------------------------------------..1911.001100000
...........................................GAAATCGA-AT----------CGGGG--CGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.....................................................................................................................................................................................................................................................G-A---AAA-------------------------------CGG------CTCAAGTGCTCTC-------GGC---------------........................................................................................................................................................................................................................................................................................................2411.001010000
.......................................................................................................................................................GTT-GG----AG-CGC--TACGAGCTTAAGTGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
...............................................................................................................................................................................................................................................................................................................................................................AAA--------TTACACAGCCATAT--AGCC-GT...................................................................................................................................................................................................................................................2311.001010000
.......................................................................................................................................................GTT-GG----AG-CGC--TACGAGCTTAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
droBip1
GTAGCGGG-----------GTA--CGGCGAC------------GAAATCGA-AT----------CGGGG--CGAGTG-CTTATCG----CGCCAGA---AA-----AAAAAGAGTAATTTGTGATACCTGTCCGTT---GAATATTGGCTTGTT-GG----AG-CGC--TACGCGCTTAAGTGGTATTAATTT-TTTATTAATTATTATCGTATTTATT-GCC---AAC--CGAAAGTGGAGTGCG-A---AAA----------------------------------ACG--ACTCAAGTGCTCTC-------GGCCATA-----------CGTGC-TAAGCCAATAAATAAA--------TTACACAGCCATAT--AGCC-GTGATCCTTCCC-------------------------------------------------------------------A-------------------------------------------------------------------CCAATT---GCAA---CTGATAATGCACA----CGGACTTT-------------------------------------------------------ATSizeHit CountTotal NormTotal
No Reads
dp5
ACTGGC-------------GTAAGCCTCAAC------------GAGCAGCA-AT----------C-------GACCG-CTTATCAGCCCTTGC--------------CAAAGAGTAATTTGTGATACCTGTCCGCCTT-GTGTATTGGCTTGTTTAG----AG-CGC--AACGCGCTTAAGTGGTGTTAATTT-TTCAGTAATTATTATCGTATTTATT-GCC---GAA--CGAAAGTGAAGTGCG-ATCGAACCCTC---------CGCTTCCTCCGCCCCCACCGCTC---CGTCCAGTGCC--G-TGT---GTCCGTC-----------CGTGCGAATGGCAATAAATGAA--------TTACAGAGCCATAA--AGTT-GT------------------------------------------------------------------------------------------------CTGATCAGCGTGGT-----CGGGTT-----------GCGGTCGTCTCGGCCAACT---GCAG---CTGATAATGGACA--TGGGAAGTCTACGTG------------------------------------------TGTG--TGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................CCATAA--AGTT-GT------------------------------------------------------------------------------------------------CTGATCAGCGTG.......................................................................................................................................2411.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................GAGCCATAA--AGTT-GT------------------------------------------------------------------------------------------------CTGATC.............................................................................................................................................2111.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................GT------------------------------------------------------------------------------------------------CTGATCAGCGTGGT-----CGGGTT-----------GCGGT..........................................................................................................2711.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGCCAACT---GCAG---CTGATAATG.........................................................................2411.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CTGATAATGGACA--TGGGAAGTCTA........................................................2611.0010100000000
droPer2
ACTGGC-------------GTAAGCCTCAAC------------GAGCAGCA-AT----------C-------GACCG-CTTATCAGCCCTTGC--------------CAAAGAGTAATTTGTGATACCTGTCCGCCTT-GTGTATTGGCTTGTTTAG----AG-CGC--AACGCGCTTAAGTGGTGTTAATTT-TTCAGTAATTATTATCGTATTTATT-GCC---GAA--CGAAAGTGAAGTGCG-ATCGAACCCTCCGCTGCCTCCGCTTCCTCCGCCCCCACCGCTC---CGTCCAGTGCC--G-TGT---GTCCGTC-----------CGTGCGAAAGGCAATAAATGAA--------TTACAGAGCCATAA--AGTT-GT------------------------------------------------------------------------------------------------CTGATCAGCGTGGT-----CGGGTT-----------GCGGTCGTCTCGGCCAACT---GCAG---CTGATAATGGACA--TGGGAAGTCTACGTG------------------------------------------TGTG--TGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................G-ATCGAACCCTCCGCTGC............................................................................................................................................................................................................................................................................................................................................................................1811.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................T-GT------------------------------------------------------------------------------------------------CTGATCAGCGTGGT-----CGGG............................................................................................................................2111.001010000
....................................................................................................................................................................................................................................................................................................................TGT---GTCCGTC-----------CGTGCGAAAG..............................................................................................................................................................................................................................................................................................2011.001010000
......................................................................................................................................................................................................................................................................................................................................................................................AA--AGTT-GT------------------------------------------------------------------------------------------------CTGATCAGCGT........................................................................................................................................1911.001000100
droWil2
G-------------------------------------------------------------------------------------------C--------------CAAAGAGTAATTTGTGATACCTGTCCGTTATATTGTATTGACTTGTA-GC----AGTCGC--AACGAGCTTAAGTGGTGTTAATTT-TTTATTAATTATTATCGTATTTATTTAACCA-GAA--CGAAAGTGAAGTGCG-A---ATT--------------------------------G--CA--TTTCAAGTGTT--T-------CGACATTAACCTAACTGGCATG--AAAGGCAATAAACAA---------TTGTG---------------------------------------------------------------------------------------------CATC----GGT-G--G-TC---T-----------------------------------------------GCAATG---GCAG----AGATAAAGTAAT----CAAACACC--------------------CAA---------------------------GC-TGGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................................................................................................................................................................A---------TTGTG---------------------------------------------------------------------------------------------CATC----GGT-G--G-TC---T-----------------------------------------------GCAATG---GCA......................................................................................2711.00100100
............................................................................................................................................................................................................................................................................................................................................................................GTG---------------------------------------------------------------------------------------------CATC----GGT-G--G-TC---T-----------------------------------------------GCAATG---GCAG----A................................................................................2611.00100010
.........................................................................................................................................................A-GC----AGTCGC--AACGAGCTTAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATG---GCAG----AGATAAAGTAAT----C................................................................2211.00100100
droVir3
GCTCAGTT-----G------AG--CAGCAATAGCCGTAACCGT-CGCTGG----------CAATCGA----CG-ACG-CTTATCAGC-TTTGC--------------CAAAGAGTAATTTGTGATACCTGTCCGTT---TTGTATTGGTTTGTA-GC----AG-CGC--GACGAGCTTAAGTGGTGTTAATTT--TTATTAATTATTATCGTGTTTATT-GC----CAA--CGAAAGTGAAGTGCGTG---AAT-------------------------------T---TA--TTTCAAGTGGT--TGTG----TGTTATTAAC--------CAGGC-AACCAC----AATAAATAAC----ATATCTATCCA-AA--ATCC-AAGAACAATCA--------------------------------------------------------------ATT-----G---------------------CAACACGGT-----CCAG----------TTTG-------------CAACT---GCAGCCACAGATAGGGCTTT----ACAAA------------------ATTCCTA------A-CAGGGTCT------------ATTGGTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................CGCTGG----------CAATCGA----CG-ACG-CT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2015.005002100000000000000100000000000000000000000000000000000000000010
....AGTT-----G------AG--CAGCAATAGCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000100010000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................CAA--CGAAAGTGAAGTGCGT.............................................................................................................................................................................................................................................................................................................................................................................................1912.002002000000000000000000000000000000000000000000000000000000000000
............................................CGCTGG----------CAATCGA----CG-ACG-CTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000100000000000000000000000000000000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTT----ACAAA------------------ATTCCTA------A-CAGGGTCT------------.......2711.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................TTGGTTTGTA-GC----AG-CGC--GAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................AAC----ATATCTATCCA-AA--ATCC-AAGAA................................................................................................................................................................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
...........................................................................................................................................................GC----AG-CGC--GACGAGCTTAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
...CAGTT-----G------AG--CAGCAATAGCCGTAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000010000000000000000000000000000000000000000
.............................................GCTGG----------CAATCGA----CG-ACG-CC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----G---------------------CAACACGGT-----CCAG----------TTTG-------------C................................................................................................2011.001000000000000000000000010000000000000000000000000000000000000000
............................................................................................................................................................................................................................GC----CAA--CGAAAGTGAAGTGCGTG---A........................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------------CAACT---GCAGCCACAGATAGGGCTTT----A................................................................2711.001000000000000000100000000000000000000000000000000000000000000000
...CAGTT-----G------AG--CAGCAATAGCCGTAACCGC-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................GGTTTGTA-GC----AG-CGC--GACGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................................G---AAT-------------------------------T---TA--TTTCAAGTGGT--..................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................AA--CGAAAGTGAAGTGCGT.............................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................GTG----TGTTATTAAC--------CAGGC-..................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................ACGAGCTTAAGTGGTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000001000
...CAGTT-----G------AG--CAGCAATAGCCGTAACCGT-C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000001000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................GC----CAA--CGAAAGTGAAGTGCG..............................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................T-GC----CAA--CGAAAGTGAAGTGCGTG---A........................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000001000000000000000000000000000000000000000000000000
.................................................................................................................................................................AG-CGC--GACGAGCTTAAGTGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
.........................................................................................................................................................................GACGAGCTTAAGTGGTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
---------------------------------------------------------------------------CG-CTTATCAGC-TTTGC--------------CAAAGAGTAATTTGTGATACCTGTCCGTT---TTGTATTGGGTTGTA-GC----AG-CGC--GACGAGCTTAAGTGGTGTTAATTTTTTTATTAATTATTATCGTATTTATT-GC----CAA--CCAAAGTGAAGTGCG-A---ATT------------------------------------A--TTTCAAGTGTT--T-------TGCCATTAA-------------------CC----AATAAA--------TTACAAT-----A----CGC---GAAC-------------CAAACAAATTGCACATTACAAAATAACAACAACAATAAAGAAGCGAAAGAAGCAATTGCATC----GCT-C--GCTG---TGA---------------CCAG----------TGGG-------------C--------CAG----AGATAATA-----------------C-------GTTTTCGTACAAAT---------------------------TT-T-TTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................TACCTGTCCGTT---TTGTATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droGri2
---------------------------------------------------------------------------CG-CTTATCAGC-TTTGC--------------CAAAGAGTAATTTGTGATACCTGTCCGTT---TTGTATTGGCTTGTA-GAGCGCAG-CGC--GACGAGCTTAAGTGGTGTTAATTT-TTTATTAATTATTATCGTGTTTATT-GCC-AGCAA--CGAAAGTGAAGTGCG-A---ATT------------------------------------A--CTTCAAGTGCTC-T-------GTCCATTAA-------------C-CATTCCAGTAAC-AA-----TAAATTACAAA---------AGTT-AAGAAC---------------------------------------------------------------AGCAGCTGCCTT----TTT-T--G---------------TTGT-----CCAG----------TTTG-------------CAAAT---GCAACCTCAGATAATGGTTA----AGAAATTT------------TCAATTTCTCT----ATATA---TATATGTATGTGTG----TGTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 01:48 PM