ID:

dsi_24595

 Coordinate:

3r:4419920-4420069 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3r_4419781_4419919_+]; CDS [3r_4419781_4419919_+]; intron [3r_4419920_4420613_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCCTATTCGGCACCCTCATCACCATTATGGCTGTCTCATTCGGCTATGAGGTAAGTTTAAAATGCAAAGTTGGAAAAAATAACTTTACTATAAAAAAGTAATCCCCAAAATCAGCAAAAAATCCCCTTGCCAAATGACAATAAAGTAGTCAAGAGAATAAATTACCAGACGTGAGTGCAAATACAAATTGTTTAAACAATTGCAGCGACCGCAATGGCAAATATTTTGTGAGATGCCTTTTTAGGTTTAT
**************************************************............((((((((((.......))))))((((.......)))).............((((.........))))....((((.........))))..........((((.....)))).)))).......(((((....)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 O002
Head
 M024
male body		 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
........................TTATGGCTCTCTCAGTCG................................................................................................................................................................................................................ 18 2 5 39.00 195 126 63 0 0 0 3 1 2 0 0
.....................CCATTATGGCTGTCTCATTC................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..CTATTCGGCACCCTCATC...................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GCAAATATTTTGTCGGGTGCCTTTTT........ 26 3 2 1.00 2 0 0 0 2 0 0 0 0 0 0
..............................................................TGCAGAGTTGGAAAAAAT.......................................................................................................................................................................... 18 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................AACGACCATAAAGTAGTCCAG................................................................................................. 21 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................AATTCTTTAAACAATTGTAGAG........................................... 22 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................GCAAATATTTTGTCGGGTGCCTTTT......... 25 3 10 0.20 2 0 0 0 2 0 0 0 0 0 0
.......................................................TGTGGAATGCAAAGTTGGAA............................................................................................................................................................................... 20 3 18 0.17 3 0 0 0 2 0 0 0 0 0 1
...................TACCTTTATGGCTCTCTCA.................................................................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 0 2 0 0 0 0
TCCTATTCGGCACCA........................................................................................................................................................................................................................................... 15 1 10 0.10 1 0 0 0 0 0 0 0 0 1 0
........................TTATGGCTCTCTCAGTC................................................................................................................................................................................................................. 17 2 14 0.07 1 0 0 0 0 0 0 1 0 0 0
.............................................................ATGCAAAGTTGGAAAAGC........................................................................................................................................................................... 18 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

AGGATAAGCCGTGGGAGTAGTGGTAATACCGACAGAGTAAGCCGATACTCCATTCAAATTTTACGTTTCAACCTTTTTTATTGAAATGATATTTTTTCATTAGGGGTTTTAGTCGTTTTTTAGGGGAACGGTTTACTGTTATTTCATCAGTTCTCTTATTTAATGGTCTGCACTCACGTTTATGTTTAACAAATTTGTTAACGTCGCTGGCGTTACCGTTTATAAAACACTCTACGGAAAAATCCAAATA
**************************************************............((((((((((.......))))))((((.......)))).............((((.........))))....((((.........))))..........((((.....)))).)))).......(((((....)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M053
female body
 SRR553488
RT_0-2 hours eggs
 M024
male body
...............................................................................................................................................................................................................TGGCGTTACCGTTGATAAAACACTCTAC............... 28 1 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................ATATTTCTTCATGATGGGTTTT............................................................................................................................................ 22 3 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................ATTTTTTGATTAGGGG................................................................................................................................................ 16 1 7 0.86 6 5 0 0 1 0 0 0 0
......................................................................................................GGGGTTTTAGTCGTT..................................................................................................................................... 15 0 3 0.33 1 0 0 1 0 0 0 0 0
...........................................................................................TTTTTTGATTAGGGGT............................................................................................................................................... 16 1 9 0.11 1 0 0 0 1 0 0 0 0
.................................................................TTTCAACCTTTGTTAGTG....................................................................................................................................................................... 18 2 12 0.08 1 0 0 0 0 1 0 0 0
.................................................................................................................................................ACCAGTTCTCTTCTTTAA....................................................................................... 18 2 14 0.07 1 0 0 0 0 0 1 0 0
................................................................................................................................................................................................ATTTGTCAGCGTCGCTG......................................... 17 2 16 0.06 1 0 0 0 0 0 0 1 0
...........................................................................................TTTTTTCATTAGGGTGTT............................................................................................................................................. 18 2 20 0.05 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CTGGCGTAACCGTTTATGG......................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1
...........................................................................................TTTTTTGATTAGGGG................................................................................................................................................ 15 1 20 0.05 1 1 0 0 0 0 0 0 0

Generated: 04/24/2015 at 06:58 AM