ID:

dsi_24556

Coordinate:

3l:9830989-9831086 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [3l_9831087_9831483_-]; CDS [3l_9831087_9831465_-]; exon [3l_9830816_9830988_-]; CDS [3l_9830816_9830988_-]; intron [3l_9830989_9831086_-]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------##################################################
GTACAGTCGTAATCAGAAGAACAAGCCACAATCTAATGCTGTTGGAGCAGGTGAGTCAAAGAAATATAATTTTTAAAGTATATTAAAAGAATATTATATATATGTGTTGTAAATACCAAATTAAATACTGTTACTGTTTTATCTCCAGCGGGTCTCATTTTTGTCTCTGGCGGTATGAACATTGCGTGGAGCATTGGA
**************************************************..........((.(((.(((......(((((.((((.....((((.((((.......)))))))).....)))))))))......))).))).))...**************************************************
Read size # Mismatch Hit Count Total Norm Total M024
male body
M025
embryo
M053
female body
GSM343915
embryo
SRR553487
NRT_0-2 hours eggs
SRR618934
dsim w501 ovaries
..............................................................................................................................................................TTTTGTCTCTGGCGGTATGAAC.................. 22 0 1 2.00 2 2 0 0 0 0 0
.........................................................................................................................................................CTCATTTTTGTCTCTGGC........................... 18 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................TCATTTTTGTCTCTGGCGG......................... 19 0 1 1.00 1 0 0 1 0 0 0
................................................................................................................................................GCAGCGGGTCTCATTTTTGTCTCTGGC........................... 27 1 1 1.00 1 1 0 0 0 0 0
...........................................GGAGCAGGTGAGTCAAAGAAAT..................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0
................................................................................................................................................GCAGCGGGTCTCATTTTTGTCTC............................... 23 1 1 1.00 1 1 0 0 0 0 0
.............................AATCTAATGCTGTTGGAGC...................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
.............................AATCTAATGCTGTTGGAG....................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0
...........................................................................................................................................................................GGTATGAACATTGCGTGGAGT...... 21 1 1 1.00 1 0 0 0 1 0 0
..............................................................................................................................................................TTTTGTCTCTGGCGGTATG..................... 19 0 1 1.00 1 0 1 0 0 0 0
.............................AATCTAATGCTGTTGG......................................................................................................................................................... 16 0 2 0.50 1 0 0 0 0 0 1
.........................................................................................................................................................................GCGGTATGATCATTG.............. 15 1 3 0.33 1 0 0 0 0 1 0
.....GTCGTTATCAGAAAAACA............................................................................................................................................................................... 18 2 7 0.29 2 0 2 0 0 0 0
.....................................................................................................................................................................TCTGCCGGTATGAACA................. 16 1 5 0.20 1 0 0 0 0 1 0
............................CAACCAAATGCTGTTCGAGC...................................................................................................................................................... 20 3 11 0.18 2 2 0 0 0 0 0
........................................................................................................................................................................TGCGGTAGGAACATTG.............. 16 2 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

CATGTCAGCATTAGTCTTCTTGTTCGGTGTTAGATTACGACAACCTCGTCCACTCAGTTTCTTTATATTAAAAATTTCATATAATTTTCTTATAATATATATACACAACATTTATGGTTTAATTTATGACAATGACAAAATAGAGGTCGCCCAGAGTAAAAACAGAGACCGCCATACTTGTAACGCACCTCGTAACCT
**************************************************..........((.(((.(((......(((((.((((.....((((.((((.......)))))))).....)))))))))......))).))).))...**************************************************
Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
SRR902008
ovaries
M023
head
M053
female body
SRR553487
NRT_0-2 hours eggs
SRR902009
testis
..............TCTTCCAGTTCGGTGTTAGT.................................................................................................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0
.............................................................................................................................................................AAAAACAGAGACGGCGATAAT.................... 21 3 9 0.11 1 0 1 0 0 0 0
.................................................................................................................................................................ACAGAGTCCGCAAGACTTG.................. 19 3 12 0.08 1 0 0 1 0 0 0
..................................................................................................................................................................CAGAGATCGCCCTGCTTG.................. 18 3 17 0.06 1 0 0 0 1 0 0
.............................................................................................................................................................AAAAACAGAGACCGCAACAT..................... 20 3 20 0.05 1 0 0 0 0 0 1
......................................................................................................................................................CTAGAGCAAAAACAGAG............................... 17 2 20 0.05 1 1 0 0 0 0 0
......AGCATTAGTCTTCGT................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:9830939-9831136 - dsi_24556 G-----------------------------------TACAGTCGTAATCAGAAGAACAAGCCACAATCTAATGCTGTTGGAGCAGGTGAGTCAA---AGAAATATAAT-------------------------TTTTAAAGTA--TA----------------TTAAA----AGAAT-A-------TTAT------------------------------------A-----TATATGT--GTT--------------------------------------------------------------------------------------------------------------------------------------------------GTAAATACCAAATTAAATA------------------------------------------------------------------------CTG------------------------------T--------------TA--------------CT--GT---TTTATCTCCAGCGGGTCTCATTTTTGTCTCTGGCGGTATGAACATTGCGTGGAGCATTGGA
droSec2 scaffold_0:2302694-2302893 - G-----------------------------------TACAGTCGTAATCAGAAGAACAAGCCACAATCGAATGCTGTTGGAGCAGGTGAGTCAA---AGAAATATAAT-------------------------TTTGAAAGTA--CGAC----------A-T---AAA----GTAAT-A-------TTAT------------------------------------A-----TATATGT--GTT--------------------------------------------------------------------------------------------------------------------------------------------------GTAAATACCAAATTAAATA------------------------------------------------------------------------TTG------------------------------T--------------TA--------------CC--GT---TTAATCTCCAGCGGGTCTCATTTTTGTCTCTGGCGGTATGAACATTGCGTGGAGCATTGGA
dm3 chr3L:10087261-10087490 - G-----------------------------------TACAGTCGTAATCAGAAGAACAAGCCACAATCGAATGCTGTTGGAGCAGGTGAGTCAA---AGAAAAAAGAT-------------------------TTTTAAGTTT--TGAC----------A-TTTTAAA----GTAAT-A-------TTAT------------------------------------A-----TATATATGCATT--------------------------------------------------------------------------------------------------------------------------------------------------GTAACTACCAAATTAAATATAGTACAAT-TT--------------------------TACACTTAG------------------------------------------------------------CGA----ACTAACCA--------------CT--GT---TTAATCTCCAGCGGGTCTCATTTTCGTCTCTGGCGGTATGAATATTGCGTGGAGCATTGGA
droEre2 scaffold_4784:10066670-10066885 - G-----------------------------------TACAGTCGCAATCAGAAGAACAAGCCACAATCAAATGCTGTTGGCGCAGGTGAGTCAC---AGTTAAAGG-------------------------------------------AGTC-ATAAG-TCA----GGGA----ATAATTTTTTATACA------------------------------------ATT---AATAT-TGCATT--------------------------------------------------------------------------------------------------------------------------------------------------TTAAGCACAATATTAAGT------------T--------------------------TACAAT-AC------------------------------------------------------------TTA----TCCAAGCA--------------CT--GT---TTAATCGCCAGCGGGTCTCATTTTTGTCTCTGGCGGCATGAACATTGCGTGGAGCATTGGA
droYak3 3L:10066822-10067049 - G-----------------------------------TACAGTCGTAATCAGAAGAACAAGCCACAATCTAATGCAGTTGGAGCAGGTGAGTCAC---AGTTAAAGGTT-------------------------TATGAAAGCA--TGAG----------A-GTAATAA----GGAAT-A-------TACA------------------------------------A-----AATATGC--ATT--------------------------------------------------------------------------------------------------------------------------------------------------CCAAATACAGTATTGAGTTTTTTAAAACATT--------------------------TACAATTAC------------------------------------------------------------TTA----TCTACCCA--------------CT--GT---TTA-ATTGCAGCGGGTCTCATTTTCGTCTCTGGCGGCATGAACATTGCGTGGAGCATTGGA
droEug1 scf7180000409711:1937362-1937523 - G-----------------------------------TACAGTCGTAATCAGAAGAACAAACCGCAATCAAATGCTGTTGGCGCTGGTGAGTCAC---AGATATATTTAC------------------------------------------------------------------------------------------------------------------------------------TAT--------------------------------------------------------------------------------------------------------------------------------------------------GCTAATACCA--------------------------------------------------------------------------------------------------------------------CTA----ACTAACAA--------------CCTTTT---ATAATCTCCAGCTGGTCTGATTTTCGTCTCTGGAGGAATGAACATAGCGTGGAGTATTGGA
droBia1 scf7180000302428:7679681-7679846 + G-----------------------------------TACAGTCGGACTCAGAAGAACAAGCCACAATCAAATGCTGTTGGCGCAGGTGAGTCAT---GGTTCAGGGTGCAAGG-------AACTACTT-------------------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCACCT-----AATCCTC-A-----ACATT--TG-CCCTCTCCAGCGGGTCTCATTTTTGTCTCGGGAGGAATGAACATTGCGTGGAGCATTGGG
droTak1 scf7180000415209:89571-89790 - G-----------------------------------TACAGTCGCAATCAGAAGAACAAGCCACAATCGAATGCTGTTGGCGCAGGTGAGTCAC---GGTTCAATGTACAA------------------------------------------------------------------------------------------------------------------------------------------------------TCTAGATTAATA--------------------------------------------------------------------------------------------------------------------------TA------------------A-----TTGGACCCTATCTGGTAGATAGTATCTACAATATATAGAATAATAATTT-------------------------------------------------ATCAACT-----AAACACTTA-----CCTTTT---TTCCTCTCCAGCGGGTCTTATTTTTGTCTCTGGTGGAATGAATATTGCGTGGTGCGTTGGT
droEle1 scf7180000490564:893103-893330 - G-----------------------------------TACAGTCGCAACCAGAAGAACAAACCACAATCAAACGCAGTTGGCGCAGGTGAGTCAC---AGATCAAAGTGCGGGG-------AAATATGTTAAAGTCAA--------------TC-TGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAAAGCCAACT------------AA----TACTTACTTATATTATTATACTTATATTAGCTA----------------------------------------------------------TAAT---------------GATCACTAAAATGA---C--TTG-CCTTTTGCAGCAAGTCTCATCTTTGTCTCTGGAGGAATGAACATTGCGTGGAGCATGGGC
droRho1 scf7180000776514:303212-303424 - G-----------------------------------TACAGTCGTAATCAGAAGAACAAACCACAATCAAATGCCGTTGGCGCAGGTGAGTCAC---ACATCAAAGTACAAAG-------A----------------------------AATT-TTCAG-TGA----AAAA----AT---------------------------------------------------------------------------AATATATTTATTTAAT--------------------------------------------------------------------------------------------------------------------------ATAACTA------------------AAA-TTTACATTCA--------------------------------------------------------------------------------------------CAACT-----GATCACTAAAGTTA---T--ATC-CCATTTTCAGCGAGTCTCATCTTCATCTCTGGAGGAATGAACATTGCGTGGAGCATTGGA
droFic1 scf7180000453841:984152-984334 + G-----------------------------------TACAGTCGCAATCAGAAGAACAAGCCCCAATCAAATGCAGTTGGCGCAGGTGAGTCGC---AATCCAAAGTTTATTGTTCATAGAAATATTTGGAAATTAAT-----AT----TAA-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTACTTAATTTA---T--TTC-CTTCTCCTAGCTGGTTTAATTTTTGTTTCCGGTGGCATGAATATTGCGTGGAGCATTGGC
droKik1 scf7180000302334:371819-371902 + G-----------------------------------TACAGTCGTAATCAGAAGAACAAGCCACAATCTTATGCTGTGGGCGGAGGTGAGTCAG---GGTCGATAGAAGAA-----------------------------------------------------------------A-A-------TTAT------------------------------------A-----TATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13337:14999347-14999535 - G-----------------------------------ATGAGTCGCAATCAGAAGAATAAGCCACAATCAAATGCTGTGGGTGGAGGTGAGTCATACCAGTTCAAAGTCCAAAG-------A------------------------TC----------------TCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----TGAACTATTATCTCTTGGGACTAAAATATAATA-------------------------------------------------------------------------------------AATACG---T--AT-TTCTCATTCAGCTGGCTTAATATTTGTATCCGGAGGAATGAACATAGCGTGGAGCATTGGA
droBip1 scf7180000395155:928244-928424 - G-----------------------------------TACAGTCGCAATCAGAGGAATAAGCCACAATCGAATGCTGTGGGAGGAGGTGAGTCATAGCAGTTCAAAGACCAAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----TCAAAAAAA----------------------------------------------------------------------GTGTTG---TATAACCATTTGAGA--------------------------------CTAATGTA---T--AAC-TAATTTTTAGCTGGCCTAATATTTGTATCTGGAGGAATGAACATAGCGTGGAGCATTGGA
dp5 XR_group6:7546283-7546545 + GAATTAGTCATCTGCTCTGCAATGGAAATCCGATAAGATAGCCTTGAATGGGGGGCGGGGCC------------------------TATATT-----------------------CATGGAATTGATTAAGAACCAGT-----GA----CGT-CATCAGG-CC-----------------------------------------------------------------------------------AGACAAATTATATCATTTTGATGGGTC--------------------------------------------------------------------------------------------------------------------------TT------------------AA----TAGATTCCCATCTCATAGTACCTTTTTGTACTAGATAGACATGAAATG-TATGCAAAATTCTG-------------------------------------------------------------T--TCT---TCCACTTTCAGCGGGTCTGATCTTTGTCTCGGGTGGAATGAACATTGCGTGGTCCATCGGG
droPer2 scaffold_27:911892-912119 - A-----------------------------------GATAGCCTTGAATGGGGGGCGGGGCCTATATT-----------------------------------------------CATGGAATTGATTAAGAACCAGT-----GA----CGT-CATCAGG-CC-----------------------------------------------------------------------------------AGACAAATTATATCATTTTGATGGGTC--------------------------------------------------------------------------------------------------------------------------TT------------------AA----TAGATTCCCATCTCATAGTACCTTTTTGTACTAGATAGACATGAAATG-TATGCAAAATTCTG-------------------------------------------------------------T--TCT---TCCACTTTCAGCTGGTCTGATCTTTGTCTCGGGTGGAATGAACATTGCGTGGTCCATCGGG
droWil2 scf2_1100000004837:712984-713292 + G-----------------------------------TATAGCCGTAATCAAAAAAATAAACCACAATCAAACTCCGCTAGCGTTGGTAAGTCCC---ACAACAGCATT-------------------------TTAGT-----T-----AGTC-ATCTG-TTA----TAGATAG-ATAACTGTGTATACATACCCCCTTGTTGCCACCCGTCACAATCGCTGGGATATTAGATAGGCTT--CTC--------------------------------------------------------------GCTAATCAT-ATCGCCCCTTATCAATCGCGACGTGATCCTGGCAAATCAACAATTATTACGACCTTACTGTATACATATTTTATCTCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAATTAGCTGCTCTCATCTTCATCTCTGGCGGCATGAACATTGCCTGGAGCAGCGGT
droVir3 scaffold_13049:15861525-15861805 - dvi_20130 G-----------------------------------TATAACCGAAACCAAAAGAACAAACCACAATCAAATGCAGCGGGCGCGGGTATGTTCA---ACCACTGAGAA-------------------------TTAGT-----C-----AGCT-AGCC-GTA----AA----------------------------------------------------------------AAGACCT--GCTGTCGATAAGATAGTCCCTGTCAATCAGCT---------------------------------------------------------------------------------------------------------------------------T------------------TG----TAGTTCGCTGACGTGCAGGTTTTGCCCGCGCTTGTCAGTGATCAACTG-ATTGCTCAAAAATGTTCCTGCA-TT------AATTTAATTTATAA---------------------------------T--TCT-ATTAAATTAGCTGCACTCATCTTTCTATCGGGCGGCATGAATATAGCGTGGAGCGTTGGT
droMoj3 scaffold_6680:20942761-20943031 + G-----------------------------------TACAACCGAAACCAGCGGAACAAGCCACAGTCCAATGCTGTGGGAGCTGGTACGTA-C---GGCTGAATC-------------------ATCTGAAATTAGT-----CA----GGT-GGC-C-ATA----A-----------------------------------------------------------A-----AATAAGT--GCTCTAGATAAGATGTACAGTGCCAATCTACCTTGCGCTTGGCTAACCTGATTGTGGGCTTTTCAGCTAGCCATTA------------------------ATGCCCGCAAATCAAT--------------------------------------TA-----CTA--------------------------------------------------------------------------------------------------------------------------------------AATATAATTTTC---TCTATCTTCAGCTGCGCTCATCTTCGTTTCGGGTGGTATGAACATTGCCTGGAGCATTGGC
droGri2 scaffold_15110:12785660-12785865 + T-----------------------------------TTTAATCGCATCCAAACTAATAGGCCCCAAATGAATGTCTTGAATGCAGGTAAGTTGC---TGCTTAGTTATAAA-------------AT-------GTTAACATTA--TC----------CGA-TC-----------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAA-ATTGTTCATAAATTTCC--GCT-TTCCATATAAGATAATTTC--T--------------TA--------------TT--GCTTC-ACTTTTTTAGCTGCCCTCATTTTCATTTCGGGGGGGATGAACATCGCTTGGAGCATTGGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
G-----------------------------------TACAGTCGTAATCAGAAGAACAAGCCACAATCTAATGCTGTTGGAGCAGGTGAGTCAA---AGAAATATAAT-------------------------TTTTAAAGTA--TA----------------TTAAA----AGAAT-A-------TTAT------------------------------------A-----TATATGT--GTT--------------------------------------------------------------------------------------------------------------------------------------------------GTAAATACCAAATTAAATA------------------------------------------------------------------------CTG------------------------------T--------------TA--------------CT--GT---TTTATCTCCAGCGGGTCTCATTTTTGTCTCTGGCGGTATGAACATTGCGTGGAGCATTGGASizeHit CountTotal NormTotalM023
Head
M024
Male-body
M025
Embryo
M053
Female-body
O001
Testis
O002
Head
SRR553485
Ovary
SRR553486
Ovary
SRR553487
Ovary
SRR553488
Ovary
SRR618934
Ovary
V044
Embryo
SRR902008
Ovary
SRR902009
Testis
SRR1275487
Male larvae
SRR1275485
Male prepupae
SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTCTCTGGCGGTATGAAC..................2212.00202000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTTTTGTCTCTGGC...........................1811.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTTTTGTCTCTGGCGG.........................1911.00100010000000000000
..............................................................................GGAGCAGGTGAGTCAA---AGAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
................................................................AATCTAATGCTGTTGGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
................................................................AATCTAATGCTGTTGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATGAACATTGCGTGGAGT......2111.00100000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTCTCTGGCGGTATG.....................1911.00100100000000000000
................................................................AATCTAATGCTGTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1620.50100000000001000000
droSec2
G-----------------------------------TACAGTCGTAATCAGAAGAACAAGCCACAATCGAATGCTGTTGGAGCAGGTGAGTCAA---AGAAATATAAT-------------------------TTTGAAAGTA--CGAC----------A-T---AAA----GTAAT-A-------TTAT------------------------------------A-----TATATGT--GTT--------------------------------------------------------------------------------------------------------------------------------------------------GTAAATACCAAATTAAATA------------------------------------------------------------------------TTG------------------------------T--------------TA--------------CC--GT---TTAATCTCCAGCGGGTCTCATTTTTGTCTCTGGCGGTATGAACATTGCGTGGAGCATTGGASizeHit CountTotal NormTotalM054
Female-body
V113
Male-body
V114
Embryo
V115
Head
.............................................................CACAATCGAATGCTGTTGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020200
.......................................................ACAAGCCACAATCGAATGCTGTTGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTTTGTCTCTGGCGGTATGAA...................2411.0011000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAACATTGCGTGGAGCAT....2111.0011000
G-----------------------------------TACAGTCGTAATCAGAAGAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
dm3
G-----------------------------------TACAGTCGTAATCAGAAGAACAAGCCACAATCGAATGCTGTTGGAGCAGGTGAGTCAA---AGAAAAAAGAT-------------------------TTTTAAGTTT--TGAC----------A-TTTTAAA----GTAAT-A-------TTAT------------------------------------A-----TATATATGCATT--------------------------------------------------------------------------------------------------------------------------------------------------GTAACTACCAAATTAAATATAGTACAAT-TT--------------------------TACACTTAG------------------------------------------------------------CGA----ACTAACCA--------------CT--GT---TTAATCTCCAGCGGGTCTCATTTTCGTCTCTGGCGGTATGAATATTGCGTGGAGCATTGGASizeHit CountTotal NormTotalGSM154618
Ovary
GSM154620
Ovary
GSM154621
Ovary
GSM154622
Ovary
GSM180328
Head
GSM180329
Mixed-body
GSM180330
Embryo
GSM180331
Embryo
GSM180332
Embryo
GSM180333
Embryo
GSM180334
Larvae
GSM180335
Disc
GSM180336
Pupae
GSM180337
S2
GSM231091
Ovary
GSM239041
Head
GSM239050
Head
GSM239051
S2
GSM239052
S2
GSM246084
Head
GSM266765
S2
GSM280082
Ovary
GSM280083
Ovary
GSM280084
Ovary
GSM280085
Testis
GSM280086
Ovary
GSM280087
S2-NP
GSM280088
S2-NP
GSM312995
Head
GSM313160
Head
GSM313161
Head
GSM313162
Head
GSM313163
Head
GSM313164
Head
GSM313165
Head
GSM343287
Embryo
GSM379050
Ovary
GSM379051
Ovary
GSM379052
Ovary
GSM379053
Ovary
GSM379054
Ovary
GSM379055
Ovary
GSM379056
Ovary
GSM379057
Ovary
GSM379058
Ovary
GSM379059
Ovary
GSM379060
Ovary
GSM379061
Ovary
GSM379062
Ovary
GSM379063
Ovary
GSM379064
Ovary
GSM379065
Ovary
GSM379066
Ovary
GSM379067
Ovary
GSM424739
S2
GSM424740
S2
GSM424741
S2
GSM467729
Female-body
GSM467730
Female-body
GSM467731
Female-body
M002
CS
M003
Male-body
M004
Male-body
M005
ML-DmD32
M006
ML-DmD32
M029
OSC
M030
OSC
M031
OSC
M032
S2-R+
M033
S2-R+
M034
S2-R+
M035
S2-R+
M036
S2-R+
M037
S2-R+
M038
S2-R+
M039
S2-R+
M048
S2-R+
OSS2
OSS
OSS6
OSS
OSS7
OSS
OSS8
OSS
S1
Head
S10
Embryo
S11
Embryo
S12
Embryo
S13
Embryo
S14
Embryo
S15
S2-GMR
S16
Kc
S17
Larvae
S18
Larvae
S19
Pupae
S2
Head
S20
Pupae
S21
Disc
S22
Head
S23
Female-body
S24
Male-body
S25
Larvae
S26
Larvae
S27
Pupae
S28
Pupae
S29
Head
S3
Male-body
S30
S2-GMR
S31
S2
S32
S2
S33
Kc
S34
Kc
S35
Kc
S4
Female-body
S5
Disc
S6
Embryo
S7
Embryo
S8
S2
S9
Embryo
SRR001337
Head
SRR001338
Head
SRR001339
Head
SRR001340
Head
SRR001341
Head
SRR001342
Head
SRR001343
Head
SRR001344
Head
SRR001345
Head
SRR001346
Head
SRR001347
Head
SRR001348
Head
SRR001349
Head
SRR001664
Head
SRR010951
Ovary
SRR010952
Ovary
SRR010953
Ovary
SRR010954
Ovary
SRR010955
Ovary
SRR010956
Ovary
SRR010957
Ovary
SRR010958
Ovary
SRR010959
Ovary
SRR010960
Ovary
SRR014268
Embryo
SRR014269
Embryo
SRR014270
Embryo
SRR014271
Embryo
SRR014272
Embryo
SRR014273
Ovary
SRR014274
Ovary
SRR014275
Ovary
SRR014276
Ovary
SRR014277
Ovary
SRR014278
Ovary
SRR014279
Ovary
SRR014280
Ovary
SRR014281
Ovary
SRR014282
Ovary
SRR023197
S2
SRR023399
S2
SRR023400
S2
SRR023402
S2
SRR023407
S2
SRR029028
S2
SRR029029
S2
SRR029030
S2
SRR029031
S2
SRR029032
S2
SRR029033
S2
SRR029608
Head
SRR029633
Head
SRR030145
gb3
SRR031692
Head
SRR031693
Head
SRR031694
Head
SRR031696
Head
SRR031697
Head
SRR031698
Head
SRR031699
Head
SRR031700
Head
SRR031701
Head
SRR031702
Head
SRR031703
Head
SRR031704
Head
SRR032092
S2
SRR032093
S2
SRR032094
S2
SRR032095
S2-NP
SRR032096
S2-NP
SRR032152
Head
SRR060643
Testis
SRR060644
Ovary
SRR060645
Testis
SRR060646
Ovary
SRR060647
Ovary
SRR060648
Ovary
SRR060649
Ovary
SRR060650
Testis
SRR060651
Ovary
SRR060652
Testis
SRR060653
Ovary
SRR065151
Ovary
SRR065152
Ovary
SRR065153
Ovary
SRR065154
Ovary
SRR065155
Ovary
SRR065800
Ovary
SRR065801
Ovary
SRR065802
Ovary
SRR065803
Ovary
SRR065804
Ovary
SRR065805
Ovary
SRR065806
Ovary
SRR065807
Ovary
SRR097865
S2-NP
SRR097866
S2-NP
SRR097867
S2-NP
SRR298536
Ovary
SRR298537
Ovary
SRR298711
Ovary
SRR298712
Ovary
SRR317110
Ovary
SRR317111
Ovary
SRR317112
Ovary
SRR317113
Ovary
SRR317114
Ovary
SRR317115
Ovary
SRR317116
Ovary
SRR317117
Ovary
SRR341115
S2
SRR341116
S2
SRR341117
S2
SRR341118
S2
SRR351332
Mixed-body
SRR351333
Mixed-body
T004
OSC
T005
CME-L1
V001
Embryo
V002
Embryo
V003
S2
V006
Female-body
V007
Head
V008
S2
V009
CME-L1
V010
ML-DmD20-C5
V011
Sg4
V012
Male-body
V013
Head
V014
DTT
V015
DreRFHV
V018
Kc167
V019
GM2
V020
S2-R+
V021
ML-DmD21
V022
ML-DmD32
V023
Head
V024
Kc167
V025
S2-R+
V026
1182-2H
V027
ML-DmD21
V028
CME-W1-Cl.8+
V029
ML-DmD9
V030
ML-DmD8
V031
GM2
V032
S1
V033
CME-W1-Cl.8+
V034
ML-DmD16-C3
V035
ML-DmD32
V036
ML-DmD20-C5
V037
S2
V038
S2
V063
Ovary
V0632
Ovary
V064
Ovary
V0642
Ovary
V065
Ovary
V0652
Ovary
V066
Ovary
V0662
Ovary
V067
S2-NP
V073
mbn2
V074
S3
V075
ML-DmBG1-C1
V076
ML-DmBG3-C2
V077
Head
V078
Head
V079
Head
V080
Head
V081
Embryo
V082
Embryo
V083
Male-body
V084
Female-body
V085
CME-W2
V086
Female-body
V088
Ovary
V0882
Ovary
V089
Ovary
V0892
Ovary
V090
Male-body
V091
fGS/OSS
V092
Male-body
V093
Male-body
V094
S2-R+
V095
S2-R+
V096
Ovary
V097
Ovary
V098
Ovary
V125
ML-DmD9
V126
CME-L1
V127
G2
V128
S3
V129
ML-DmBG1-C1
V130
ML-DmBG3-C2
V131
ML-DmD16-C3
V132
ML-DmD32
V133
Sg4
V134
ML-DmD8
V135
CME-W2
V136
Male-body
V137
Head
V138
Male-body
V139
Female-body
V140
Female-body
V141
Female-body
V142
Female-body
V144
OSC
V145
S2
V146
S1
V147
1182-2H
V148
mbn2
GSM1528798
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTGGCGGTATGAATATTGCGT...........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TCGTAATCAGAAGAACAAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GAAGAACAAGCCACAATCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.............................................................CACAATCGAATGCTGTTGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATGAATATTGCGTGGAGCATT...2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATTGCGTGGAGCATTGG.2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................AGTCGTAATCAGAAGAACAAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.................................................AGAAGAACAAGCCACAATCGAATGCTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................GTGAGTCAA---AGAAAAAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATGAATATTGCGTGG.........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...................................................................CGAATGCTGTTGGAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
droEre2
G-----------------------------------TACAGTCGCAATCAGAAGAACAAGCCACAATCAAATGCTGTTGGCGCAGGTGAGTCAC---AGTTAAAGG-------------------------------------------AGTC-ATAAG-TCA----GGGA----ATAATTTTTTATACA------------------------------------ATT---AATAT-TGCATT--------------------------------------------------------------------------------------------------------------------------------------------------TTAAGCACAATATTAAGT------------T--------------------------TACAAT-AC------------------------------------------------------------TTA----TCCAAGCA--------------CT--GT---TTAATCGCCAGCGGGTCTCATTTTTGTCTCTGGCGGCATGAACATTGCGTGGAGCATTGGASizeHit CountTotal NormTotalM055
Female-body
M057
Embryo
V060
Head
V040
Embryo
V107
Male-body
V108
Head
GSM1528801
follicle cells
G-----------------------------------TACAGTCGCAATCAGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCTCATTTTTGTCTCTGGCGGC........................2511.0011000000
G-----------------------------------TACAGTCGCAATCAGAAGAACAAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
G-----------------------------------TACAGTCGCAATCAGAAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
.................................................AGAAGAACAAGCCACAATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACATTGCGTGGAGC......1811.0011000000
.......................................................ACAAGCCACAATCAAATGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTCTCATTTTTGTCTCTGGC...........................2311.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACATTGCGTGGAGCATT...2111.0011000000
G-----------------------------------TACAGTCGCAATCAGAAGAACAAGCCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
.............................................AATCAGAAGAACAAGCCACAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTTTTGTCTCTGGCGGC........................2111.0010001000
droYak3
G-----------------------------------TACAGTCGTAATCAGAAGAACAAGCCACAATCTAATGCAGTTGGAGCAGGTGAGTCAC---AGTTAAAGGTT-------------------------TATGAAAGCA--TGAG----------A-GTAATAA----GGAAT-A-------TACA------------------------------------A-----AATATGC--ATT--------------------------------------------------------------------------------------------------------------------------------------------------CCAAATACAGTATTGAGTTTTTTAAAACATT--------------------------TACAATTAC------------------------------------------------------------TTA----TCTACCCA--------------CT--GT---TTA-ATTGCAGCGGGTCTCATTTTCGTCTCTGGCGGCATGAACATTGCGTGGAGCATTGGASizeHit CountTotal NormTotalM026
Head
M043
Female-body
M056
Embryo
V046
Embryo
V052
Head
V058
Head
V120
Male-body
SRR1275488
Male larvae
SRR1275486
Male prepupae
SRR1275484
Male prepupae
GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTGGCGGCATGAACATTGCGTGG.........2712.00200000020000
.........................................................AAGCCACAATCTAATGCAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
......................................................AACAAGCCACAATCTAATGCAGTTGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACATTGCGTGGAGCATT...2111.00100000010000
G-----------------------------------TACAGTCGTAATCAGAAGAACAAGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
..............................................ATCAGAAGAACAAGCCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCGGCATGAACATTGCGTGGAGC......2611.00101000000000
......................................................................................................................................ATGAAAGCA--TGAG----------A-GTAATAA----GG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.............................................................CACAATCTAATGCAGTTGGAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
G-----------------------------------TACAGTCGTAATCAGAAGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
................................................................AATCTAATGCAGTTGGAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCATTTTCGTCTCTGGCGGC........................2311.00100010000000
.......................................................ACAAGCCACAATCTAATGCAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCATTTTCGTCTCTGGCGGC........................2211.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTTTCGTCTCTGGCGGC........................2111.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCGGCATGAACATTGCGTGG.........2311.00101000000000
.............................................AATCAGAAGAACAAGCCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
droEug1
G-----------------------------------TACAGTCGTAATCAGAAGAACAAACCGCAATCAAATGCTGTTGGCGCTGGTGAGTCAC---AGATATATTTAC------------------------------------------------------------------------------------------------------------------------------------TAT--------------------------------------------------------------------------------------------------------------------------------------------------GCTAATACCA--------------------------------------------------------------------------------------------------------------------CTA----ACTAACAA--------------CCTTTT---ATAATCTCCAGCTGGTCTGATTTTCGTCTCTGGAGGAATGAACATAGCGTGGAGTATTGGASizeHit CountTotal NormTotal
No Reads
droBia1
G-----------------------------------TACAGTCGGACTCAGAAGAACAAGCCACAATCAAATGCTGTTGGCGCAGGTGAGTCAT---GGTTCAGGGTGCAAGG-------AACTACTT-------------------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCACCT-----AATCCTC-A-----ACATT--TG-CCCTCTCCAGCGGGTCTCATTTTTGTCTCGGGAGGAATGAACATTGCGTGGAGCATTGGGSizeHit CountTotal NormTotal
No Reads
droTak1
G-----------------------------------TACAGTCGCAATCAGAAGAACAAGCCACAATCGAATGCTGTTGGCGCAGGTGAGTCAC---GGTTCAATGTACAA------------------------------------------------------------------------------------------------------------------------------------------------------TCTAGATTAATA--------------------------------------------------------------------------------------------------------------------------TA------------------A-----TTGGACCCTATCTGGTAGATAGTATCTACAATATATAGAATAATAATTT-------------------------------------------------ATCAACT-----AAACACTTA-----CCTTTT---TTCCTCTCCAGCGGGTCTTATTTTTGTCTCTGGTGGAATGAATATTGCGTGGTGCGTTGGTSizeHit CountTotal NormTotal
No Reads
droEle1
G-----------------------------------TACAGTCGCAACCAGAAGAACAAACCACAATCAAACGCAGTTGGCGCAGGTGAGTCAC---AGATCAAAGTGCGGGG-------AAATATGTTAAAGTCAA--------------TC-TGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAAAGCCAACT------------AA----TACTTACTTATATTATTATACTTATATTAGCTA----------------------------------------------------------TAAT---------------GATCACTAAAATGA---C--TTG-CCTTTTGCAGCAAGTCTCATCTTTGTCTCTGGAGGAATGAACATTGCGTGGAGCATGGGCSizeHit CountTotal NormTotal
No Reads
droRho1
G-----------------------------------TACAGTCGTAATCAGAAGAACAAACCACAATCAAATGCCGTTGGCGCAGGTGAGTCAC---ACATCAAAGTACAAAG-------A----------------------------AATT-TTCAG-TGA----AAAA----AT---------------------------------------------------------------------------AATATATTTATTTAAT--------------------------------------------------------------------------------------------------------------------------ATAACTA------------------AAA-TTTACATTCA--------------------------------------------------------------------------------------------CAACT-----GATCACTAAAGTTA---T--ATC-CCATTTTCAGCGAGTCTCATCTTCATCTCTGGAGGAATGAACATTGCGTGGAGCATTGGASizeHit CountTotal NormTotal
No Reads
droFic1
G-----------------------------------TACAGTCGCAATCAGAAGAACAAGCCCCAATCAAATGCAGTTGGCGCAGGTGAGTCGC---AATCCAAAGTTTATTGTTCATAGAAATATTTGGAAATTAAT-----AT----TAA-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTACTTAATTTA---T--TTC-CTTCTCCTAGCTGGTTTAATTTTTGTTTCCGGTGGCATGAATATTGCGTGGAGCATTGGCSizeHit CountTotal NormTotal
No Reads
droKik1
G-----------------------------------TACAGTCGTAATCAGAAGAACAAGCCACAATCTTATGCTGTGGGCGGAGGTGAGTCAG---GGTCGATAGAAGAA-----------------------------------------------------------------A-A-------TTAT------------------------------------A-----TATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
G-----------------------------------ATGAGTCGCAATCAGAAGAATAAGCCACAATCAAATGCTGTGGGTGGAGGTGAGTCATACCAGTTCAAAGTCCAAAG-------A------------------------TC----------------TCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----TGAACTATTATCTCTTGGGACTAAAATATAATA-------------------------------------------------------------------------------------AATACG---T--AT-TTCTCATTCAGCTGGCTTAATATTTGTATCCGGAGGAATGAACATAGCGTGGAGCATTGGASizeHit CountTotal NormTotalM044
Female-body
M058
Embryo
V039
Embryo
V055
Head
V105
Male-body
V106
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAGCGTGGAGCATTGGA1913.003000030
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATATTTGTATCCGGAGGAAT......................2311.001000010
................................................................AATCAAATGCTGTGGGTGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGAACATAGCGTGGA........1911.001000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTAATATTTGTATCCGGAGGAAT......................2611.001000010
...................................................AAGAATAAGCCACAATCAAATGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGGAGGAATGAACATAGCGTGGAGC......2811.001000010
..............................................................ACAATCAAATGCTGTGGGTGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACATAGCGTGGAGC......1811.001001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATATTTGTATCCGGAGGAATGAAC..................2611.001000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAACATAGCGTGGAGCAT....2211.001000010
.....................................................GAATAAGCCACAATCAAATGCTGTGGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
droBip1
G-----------------------------------TACAGTCGCAATCAGAGGAATAAGCCACAATCGAATGCTGTGGGAGGAGGTGAGTCATAGCAGTTCAAAGACCAAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----TCAAAAAAA----------------------------------------------------------------------GTGTTG---TATAACCATTTGAGA--------------------------------CTAATGTA---T--AAC-TAATTTTTAGCTGGCCTAATATTTGTATCTGGAGGAATGAACATAGCGTGGAGCATTGGASizeHit CountTotal NormTotal
No Reads
dp5
GAATTAGTCATCTGCTCTGCAATGGAAATCCGATAAGATAGCCTTGAATGGGGGGCGGGGCC------------------------TATATT-----------------------CATGGAATTGATTAAGAACCAGT-----GA----CGT-CATCAGG-CC-----------------------------------------------------------------------------------AGACAAATTATATCATTTTGATGGGTC--------------------------------------------------------------------------------------------------------------------------TT------------------AA----TAGATTCCCATCTCATAGTACCTTTTTGTACTAGATAGACATGAAATG-TATGCAAAATTCTG-------------------------------------------------------------T--TCT---TCCACTTTCAGCGGGTCTGATCTTTGTCTCGGGTGGAATGAACATTGCGTGGTCCATCGGGSizeHit CountTotal NormTotalM022
Male-body
M040
Female-body
M059
Embryo
M062
Head
V043
Embryo
V051
Head
V112
Male-body
SRR902010
Ovary
SRR902011
Testis
SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTCTCGGGTGGAATG.....................1912.0020200000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGATCTTTGTCTCGGGT...........................2112.0020200000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTCGGGTGGAATGAACATTGCGT...........2612.0020100100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCGGGTGGAATGAACATTG..............2212.0020200000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCGGGTGGAATGAACATTGCGT...........2512.0020200000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCTCGGGTGGAATGAACATTGCGT...........2811.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGTCTCGGGTGGAATG.....................2011.0010000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGATCTTTGTCTCGGGTG..........................2211.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATCTTTGTCTCGGGTGGAATG.....................2411.0010100000000
.........................................................................................................................................................................................................................................................CAAATTATATCATTTTGATGG.........................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGATCTTTGTCTCGGGTGGAAT......................2611.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGTCTCGGGTGGAAT......................1911.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATCTTTGTCTCGGGTGGA........................2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGATCTTTGTCTCGG.............................1811.0010000000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGTCTCGGGTGGAATGAA...................2211.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAACATTGCGTGGT........1811.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGGTGGAATGAACATTGCGTGGTC.......2611.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAACATTGCGT...........1811.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCTCGGGTGGAATGAA...................2011.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCGTGGTCCATCGGG1811.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTTGTCTCGGGTGG.........................1811.0010100000000
droPer2
A-----------------------------------GATAGCCTTGAATGGGGGGCGGGGCCTATATT-----------------------------------------------CATGGAATTGATTAAGAACCAGT-----GA----CGT-CATCAGG-CC-----------------------------------------------------------------------------------AGACAAATTATATCATTTTGATGGGTC--------------------------------------------------------------------------------------------------------------------------TT------------------AA----TAGATTCCCATCTCATAGTACCTTTTTGTACTAGATAGACATGAAATG-TATGCAAAATTCTG-------------------------------------------------------------T--TCT---TCCACTTTCAGCTGGTCTGATCTTTGTCTCGGGTGGAATGAACATTGCGTGGTCCATCGGGSizeHit CountTotal NormTotalM021
Embryo
M042
Female-body
V042
Embryo
V050
Head
V057
Head
V111
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATCTTTGTCTCGGGT...........................1813.003300000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTCTGATCTTTGTCTCGG.............................2213.003300000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTCTCGGGTGGAATGAAC..................2212.002010001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGATCTTTGTCTCGGGT...........................2012.002200000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGTCTCGGGTGGAATG.....................2012.002020000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAACATTGCGTGGT........1812.002000002
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGGGTGGAATGAACATTGCGTG..........2511.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGGAATGAACATTGCGT...........2011.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATCTTTGTCTCGGGTGGAATG.....................2411.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGATCTTTGTCTCGGGTGGAAT......................2611.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGTCTCGGGTGGAATGAAC..................2311.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCTCGGGTGGAATGA....................1911.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACATTGCGTGGTCCATCGG.2111.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGGTGGAATGAACATTGCGT...........2311.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGATCTTTGTCTCGGGT...........................2111.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGAACATTGCGTGGTCC......2111.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGTCTCGGGTGGAATGAA...................2211.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTCTCGGGTGGAATG.....................1911.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTCTCGGGTGGAATGA....................2011.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCGGGTGGAATGAACATTGCGTGGT........2811.001100000
droWil2
G-----------------------------------TATAGCCGTAATCAAAAAAATAAACCACAATCAAACTCCGCTAGCGTTGGTAAGTCCC---ACAACAGCATT-------------------------TTAGT-----T-----AGTC-ATCTG-TTA----TAGATAG-ATAACTGTGTATACATACCCCCTTGTTGCCACCCGTCACAATCGCTGGGATATTAGATAGGCTT--CTC--------------------------------------------------------------GCTAATCAT-ATCGCCCCTTATCAATCGCGACGTGATCCTGGCAAATCAACAATTATTACGACCTTACTGTATACATATTTTATCTCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAATTAGCTGCTCTCATCTTCATCTCTGGCGGCATGAACATTGCCTGGAGCAGCGGTSizeHit CountTotal NormTotalM020
Head
M045
Female-body
V117
Male-body
V118
Embryo
V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATCTTCATCTCTGGCGGC........................2113.00310200
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATCTTCATCTCTGGCGGCATGA....................2512.00210100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTCTCATCTTCATCTCT..............................2111.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGCATGAACATTGCCTGGAGCAGC...2711.00101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTCTGGCGGCATGAACATT...............2211.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCATCTTCATCTCTGGCGGC........................2211.00101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCTCTGGCGGCATGAACATTGC.............2511.00101000
.........................................................AAACCACAATCAAACTCCGCTAGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATGAACATTGCCTGGAGC......2111.00101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACATTGCCTGGAGCAGC...2011.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCTCATCTTCATCTCTGG............................2111.00101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACATTGCCTGGAGCAGCGGT2411.00101000
...........................................GTAATCAAAAAAATAAACCACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATCTTCATCTCTGGCGG.........................2011.00101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATGAACATTGCCTGGAGCAGCGGT2711.00101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACATTGCCTGGAGCAGC...2111.00101000
...........................................................ACCACAATCAAACTCCGCTAGCGTTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
........................................................................................................................................................................................................................................................................................................................................CAATCGCGACGTGATCCTGGC..........................................................................................................................................................................................................................................................................2111.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATCTTCATCTCTGGCGGCATG.....................2411.00100100
...........................................GTAATCAAAAAAATAAACCACAATCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACATTGCCTGGAGCA.....1911.00101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCTCTGGCGGCATGAA...................1911.00101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTCTGGCGGCATGAAC..................1911.00101000
droVir3
G-----------------------------------TATAACCGAAACCAAAAGAACAAACCACAATCAAATGCAGCGGGCGCGGGTATGTTCA---ACCACTGAGAA-------------------------TTAGT-----C-----AGCT-AGCC-GTA----AA----------------------------------------------------------------AAGACCT--GCTGTCGATAAGATAGTCCCTGTCAATCAGCT---------------------------------------------------------------------------------------------------------------------------T------------------TG----TAGTTCGCTGACGTGCAGGTTTTGCCCGCGCTTGTCAGTGATCAACTG-ATTGCTCAAAAATGTTCCTGCA-TT------AATTTAATTTATAA---------------------------------T--TCT-ATTAAATTAGCTGCACTCATCTTTCTATCGGGCGGCATGAATATAGCGTGGAGCGTTGGTSizeHit CountTotal NormTotalM027
Male-body
M028
Head
M047
Female-body
M061
Embryo
SRR060654
Ovary
SRR060655
Testis
SRR060656
Ovary
SRR060657
Testis
SRR060658
Ovary
SRR060659
Testis
SRR060660
Ovary
SRR060661
Embryo
SRR060662
Embryo
SRR060663
Embryo
SRR060664
Male-body
SRR060665
Female-body
SRR060666
Male-body
SRR060667
Female-body
SRR060668
Male-body
SRR060669
Female-body
SRR060670
Testis
SRR060671
Male-body
SRR060672
Female-body
SRR060673
Ovary
SRR060674
Ovary
SRR060675
Ovary
SRR060676
Ovary
SRR060677
Ovary
SRR060678
Testis
SRR060679
Testis
SRR060680
Testis
SRR060681
Testis
SRR060682
Embryo
SRR060683
Testis
SRR060684
Embryo
SRR060685
Embryo
SRR060686
Embryo
SRR060687
Embryo
SRR060688
Ovary
SRR060689
Testis
SRR1106712
embryo_0-2h
SRR1106713
embryo_0-2h
SRR1106714
embryo_2-4h
SRR1106715
embryo_4-6h
SRR1106716
embryo_4-6h
SRR1106717
embryo_6-8h
SRR1106718
embryo_6-8h
SRR1106719
embryo_8-10h
SRR1106720
embryo_8-10h
SRR1106721
embryo_10-12h
SRR1106722
embryo_10-12h
SRR1106723
embryo_12-14h
SRR1106724
embryo_12-14h
SRR1106725
embryo_14-16h
SRR1106726
embryo_14-16h
SRR1106727
larvae
SRR1106728
larvae
SRR1106729
mixed whole adult body
SRR1106730
embryo_16-30h
V047
Embryo
V053
Head
V116
Male-body
GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATGAATATAGCGTGGA........19114.00140011000000000001001000010000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTCATCTTTCTATCGGGC...........................2116.006105000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACTCATCTTTCTATCGGGC...........................2213.003102000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCATCTTTCTATCGGGC...........................2012.002002000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCATGAATATAGCGTGGA........2111.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTCATCTTTCTATCGGGCGGCATGA....................2811.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATATAGCGTGGAGC......1811.001001000000000000000000000000000000000000000000000000000000000000
.....................................ATAACCGAAACCAAAAGAACAAACCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.........................................................AAACCACAATCAAATGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
.....................................ATAACCGAAACCAAAAGAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATCAACTG-ATTGCTCC.........................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCTGCACTCATCTTTCTATCGGGC...........................2611.001000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATGAATATAGCGTGGAGC......2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................GAACAAACCACAATCAAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCACTCATCTTTCTATCGGGC...........................2511.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTATCGGGCGGCATGAATATA...............2311.001000100000000000000000000000000000000000000000000000000000000000
................................................................AATCAAATGCAGCGGGCGCGGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAACTG-ATTGCTCAAAAATGTT.................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
G-----------------------------------TACAACCGAAACCAGCGGAACAAGCCACAGTCCAATGCTGTGGGAGCTGGTACGTA-C---GGCTGAATC-------------------ATCTGAAATTAGT-----CA----GGT-GGC-C-ATA----A-----------------------------------------------------------A-----AATAAGT--GCTCTAGATAAGATGTACAGTGCCAATCTACCTTGCGCTTGGCTAACCTGATTGTGGGCTTTTCAGCTAGCCATTA------------------------ATGCCCGCAAATCAAT--------------------------------------TA-----CTA--------------------------------------------------------------------------------------------------------------------------------------AATATAATTTTC---TCTATCTTCAGCTGCGCTCATCTTCGTTTCGGGTGGTATGAACATTGCCTGGAGCATTGGCSizeHit CountTotal NormTotalM046
Female-body
V041
Embryo
V049
Head
V056
Head
M060
Embryo
V110
Male-body
.................................................................GTCCAATGCTGTGGGAGCTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
.............................................AACCAGCGGAACAAGCCACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002100001
...............................................CCAGCGGAACAAGCCACAGTCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAACATTGCCTGGAGC......2011.001000001
...........................................GAAACCAGCGGAACAAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
....................................................................................GGTACGTA-C---GGCTGAATC-------------------ATCTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATGAACATTGCCTGGAGCATTG..2511.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTTCGTTTCGGGTGGT........................1911.001000001
............................................AAACCAGCGGAACAAGCCACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTTCGTTTCGGGTGGTATGAAC..................2511.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATGAACATTGCCTGG.........1811.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATCTTCGTTTCGGGTGGTATGAAC..................2811.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATCTTCGTTTCGGGTGGT........................2211.001100000
droGri2
T-----------------------------------TTTAATCGCATCCAAACTAATAGGCCCCAAATGAATGTCTTGAATGCAGGTAAGTTGC---TGCTTAGTTATAAA-------------AT-------GTTAACATTA--TC----------CGA-TC-----------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAA-ATTGTTCATAAATTTCC--GCT-TTCCATATAAGATAATTTC--T--------------TA--------------TT--GCTTC-ACTTTTTTAGCTGCCCTCATTTTCATTTCGGGGGGGATGAACATCGCTTGGAGCATTGGASizeHit CountTotal NormTotalM041
Female-body
V109
Male-body
No Reads

Generated: 05/19/2015 at 02:11 PM