ID:

dsi_24550

 Coordinate:

3l:8036616-8036765 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-28.6 -28.6 -28.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CAGTCCCTGGTCGAAGTCCGGAACACCGATACCAAATTGAAGAGGAAGAGGTAAAGTTCTTAAGCCTGCAAAGTTAAATTGACCAGAACGATGGGTGGTTTTACTGCATACAGTGCTTTCAAATGGGTGGGGGATAACAACACCGAGGAGTGGCTTCCCTTGTTGATTTTTTGAAATTTGAGCACTACTGTAAATTGGTCGAGCAGTTTGTGGGAAATCCACCCAATCCCCCAGAGCACAGCCATCGTCT
**************************************************.............(((((((..((.(((((..(((......)))..))))).))))))((((((((((((((((.(((((((((......(((......)))...))))))))).))...)))).....))))...))))))....))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR1275483
Male prepupae		 M024
male body		 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR1275487
Male larvae		 SRR553487
NRT_0-2 hours eggs
..........................................................................................................................ATGGGTGGGGGATAAC................................................................................................................ 16 0 1 22.00 22 22 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATGGGTGGGGGATAA................................................................................................................. 15 0 1 8.00 8 7 1 0 0 0 0 0 0 0 0
.........................................................................................................................CATGGGTGGGGGATAAC................................................................................................................ 17 1 1 5.00 5 5 0 0 0 0 0 0 0 0 0
..........................................................................................................................ACGGGTGGGGGATAAC................................................................................................................ 16 1 1 5.00 5 5 0 0 0 0 0 0 0 0 0
..........................................................................................................................ACGGGTGGGGGATAA................................................................................................................. 15 1 3 2.00 6 6 0 0 0 0 0 0 0 0 0
........................................................................................................................CCATGGGTGGGGGATAAC................................................................................................................ 18 2 3 1.33 4 2 1 1 0 0 0 0 0 0 0
............................................................................................................................GGGTGGGGGATAACA............................................................................................................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATGGGTGGGGGATAACA............................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ATTGGGGCACTACTGTAAA........................................................ 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................CATGGGTGGGGGATAA................................................................................................................. 16 1 3 1.00 3 2 0 0 0 0 0 1 0 0 0
..........................................................................................................................ATGGGTGGGGGATAACTC.............................................................................................................. 18 2 3 0.67 2 0 0 0 0 1 1 0 0 0 0
.........................................................................................................................CATGGGTGGGGGATAACT............................................................................................................... 18 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................CATGGGTGGGGGATA.................................................................................................................. 15 1 8 0.50 4 3 1 0 0 0 0 0 0 0 0
..........................................................................................................................ATGGGTGGGGGATAACT............................................................................................................... 17 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................................AAATGGGTGCGGGATA.................................................................................................................. 16 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0
.....CCTGGTCGTAGTCCGG..................................................................................................................................................................................................................................... 16 1 5 0.20 1 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................GTAAATATGTCGAGCTGTTTG........................................ 21 3 8 0.13 1 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................ACGGGTGGGGGATAACT............................................................................................................... 17 2 8 0.13 1 1 0 0 0 0 0 0 0 0 0
.........GTCGTAGTCCGGATCAC................................................................................................................................................................................................................................ 17 2 10 0.10 1 0 0 0 0 0 0 0 0 0 1
........................................................................................................................CCATGGGTGGGGGATAACT............................................................................................................... 19 3 11 0.09 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................ATGGGTGGGGGATAACTCT............................................................................................................. 19 3 11 0.09 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................CATGGGTGGGGGATAACTC.............................................................................................................. 19 3 12 0.08 1 0 0 0 0 1 0 0 0 0 0
....................................................................................AGAACGATGGAGGGTTGTA................................................................................................................................................... 19 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TGTGGATTTTTTGAAA.......................................................................... 16 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................CACGGGTGGGGGATAA................................................................................................................. 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................ACCGAGGTATGGCTTCG............................................................................................ 17 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GTCAGGGACCAGCTTCAGGCCTTGTGGCTATGGTTTAACTTCTCCTTCTCCATTTCAAGAATTCGGACGTTTCAATTTAACTGGTCTTGCTACCCACCAAAATGACGTATGTCACGAAAGTTTACCCACCCCCTATTGTTGTGGCTCCTCACCGAAGGGAACAACTAAAAAACTTTAAACTCGTGATGACATTTAACCAGCTCGTCAAACACCCTTTAGGTGGGTTAGGGGGTCTCGTGTCGGTAGCAGA
**************************************************.............(((((((..((.(((((..(((......)))..))))).))))))((((((((((((((((.(((((((((......(((......)))...))))))))).))...)))).....))))...))))))....))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR618934
dsim w501 ovaries
.................................................CCATTTCAAGAATTCGGACGTTTCAAT.............................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
........................TGACTATGGTTTAACTT................................................................................................................................................................................................................. 17 1 2 0.50 1 1 0 0 0 0
........................................................................................................................................TGTTGTGGCTCCTAA................................................................................................... 15 1 7 0.14 1 0 1 0 0 0
....................................................................................................................................................................................................................................GGGGTCTCGGGTCGGGAG.... 18 2 9 0.11 1 0 0 1 0 0
...........GCTTCAGGCCTTAGTGCTA............................................................................................................................................................................................................................ 19 3 17 0.06 1 0 0 0 1 0
...........................................................................................................................................................AGGGAACAGCTAAAA................................................................................ 15 1 20 0.05 1 0 0 0 0 1
.......................................................................................................................................ATGTTGTGGCTCCTAA................................................................................................... 16 2 20 0.05 1 0 1 0 0 0
......................................................................................................................................................................................................ACCTCGGCAGACACCCTTT................................. 19 3 20 0.05 1 0 1 0 0 0

Generated: 04/24/2015 at 10:37 AM