ID:dsi_24533 |
Coordinate:3l:7188782-7189035 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
intergenic
| Name | Class | Family | Strand |
| AT_rich | Low_complexity | Low_complexity | + |
|
TTGCTCTCCATTATAATCGAAAGTTTTCTCTGATTGAAATGCAAATTTTAGTAAGCCATGATTAGTTATAAAATAGAATAATATAAATATATTTTTACGCTTGATTATATTAATTAAACCAGATAATGATTAGTTGAGAAACTATTTAAGTACAACTCAACGACGCAGAAATCTCTTGCATCTTGTTTTGATTTGTTTTAATATAGCCTGACAACCCTAATCCAGCAACGCCGAGTTGAAGCATGTTTTCATACTTTTTGCCGGGTAAAATGTATTTAATTATATAATTCAGCGGCCCTTGCAGCAATGGATCCCATCGACACCACCAAGCGGAAGCCCAGACGCACCTACGGC
**************************************************(((((((.(((...((((((........((((.((((((((((((.(((((.(((((..((((((((..((.....)).))))))))....(((((((((.((((.(((((((.(((((....)).)))...))))..))).))))))))).))))...........))))).)))....(((.((.((((.(((....))).))))..))))))))))))))))))))))))))))))))..)))..))))..************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553485 Chicharo_3 day-old ovaries |
M023 head |
M053 female body |
SRR553486 Makindu_3 day-old ovaries |
GSM343915 embryo |
SRR553487 NRT_0-2 hours eggs |
SRR553488 RT_0-2 hours eggs |
SRR618934 dsim w501 ovaries |
O002 Head |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................................................................................................................................................................................................................................................................TGGACCCCATCGACACCACCAAGCGGA.................... | 27 | 1 | 1 | 3.00 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................................................................................................................................................................................CTTGCAGCAATGGATCCCATCGAC................................. | 24 | 0 | 1 | 2.00 | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................................................................................................................................................................................................CGACACCACCAAGCGGAAGCCCAGA............ | 25 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................................................................................................................................................................................................ACCAAGCGGAAGCCCAGACGCACCTAC... | 27 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................................................................................................................TTTGCCGGGTAAAATGTATTTTATTA........................................................................ | 26 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................................................................................................TATATAATTCAGCGGCCCTTGCAGCAAT.............................................. | 28 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................................................................................................................................................TCAGCGGCCCTTGCAGCAATGG............................................ | 22 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................................................TAGTTTTGATTTGTTTGAATA....................................................................................................................................................... | 21 | 2 | 3 | 0.67 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................................TGTTTTGATTTGTTTTGATATT..................................................................................................................................................... | 22 | 2 | 3 | 0.33 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ......................................................................................................................................................................................TAGTTTTGATTTGTTTGAAT........................................................................................................................................................ | 20 | 2 | 7 | 0.29 | 2 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| .......................................................................................................................................................................................................................................................................................................................TACCATCGACACCACCA.......................... | 17 | 1 | 4 | 0.25 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ...........................................................................................................................................................................................................................ACCCAGCAACGCCGCGT...................................................................................................................... | 17 | 2 | 5 | 0.20 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ........................................................................................................................................................................................GTTTTGATTTGTTTGAATAAA..................................................................................................................................................... | 21 | 2 | 6 | 0.17 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................................................................................................................................................TTTAAGCATATAATTAAGCGG........................................................... | 21 | 3 | 7 | 0.14 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................................................................................................................CCTTGCGGGAAGGGATCCC....................................... | 19 | 3 | 8 | 0.13 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| .......................................................................................................................................................................................................................................................................................................................TCCCGTCGAGACCACCA.......................... | 17 | 2 | 8 | 0.13 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................................CTGATCCAGCAACGC........................................................................................................................... | 15 | 1 | 9 | 0.11 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .....................................................................................................................................................................................GTAGTTTTGATTTGTTTGAAT........................................................................................................................................................ | 21 | 3 | 20 | 0.10 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................................GTAAACCAGATAATGATA............................................................................................................................................................................................................................... | 18 | 2 | 11 | 0.09 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................TAATATAAAAATATTTTTA................................................................................................................................................................................................................................................................. | 19 | 1 | 12 | 0.08 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ........................................................................................ATACTGTTACGCTTGAGTA....................................................................................................................................................................................................................................................... | 19 | 3 | 13 | 0.08 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ....................................................................................................................................................................................................................................................................................................................GGGTCCCATCGTCTCCACCA.......................... | 20 | 3 | 13 | 0.08 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ....................................................................................................................................................................................TGTAGTTTTGATTTGTTTGAA......................................................................................................................................................... | 21 | 3 | 18 | 0.06 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
|
AACGAGAGGTAATATTAGCTTTCAAAAGAGACTAACTTTACGTTTAAAATCATTCGGTACTAATCAATATTTTATCTTATTATATTTATATAAAAATGCGAACTAATATAATTAATTTGGTCTATTACTAATCAACTCTTTGATAAATTCATGTTGAGTTGCTGCGTCTTTAGAGAACGTAGAACAAAACTAAACAAAATTATATCGGACTGTTGGGATTAGGTCGTTGCGGCTCAACTTCGTACAAAAGTATGAAAAACGGCCCATTTTACATAAATTAATATATTAAGTCGCCGGGAACGTCGTTACCTAGGGTAGCTGTGGTGGTTCGCCTTCGGGTCTGCGTGGATGCCG
**************************************************(((((((.(((...((((((........((((.((((((((((((.(((((.(((((..((((((((..((.....)).))))))))....(((((((((.((((.(((((((.(((((....)).)))...))))..))).))))))))).))))...........))))).)))....(((.((.((((.(((....))).))))..))))))))))))))))))))))))))))))))..)))..))))..************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR618934 dsim w501 ovaries |
SRR902009 testis |
SRR553485 Chicharo_3 day-old ovaries |
SRR553488 RT_0-2 hours eggs |
M024 male body |
SRR553487 NRT_0-2 hours eggs |
SRR553486 Makindu_3 day-old ovaries |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................................................................................................................................................................TATATCGGACTGTTGGGATT...................................................................................................................................... | 20 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................................................................................................................................................................................GATGGTAGCTGTGGTGGTTC........................ | 20 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................................................................................................................................................................ATGGTAGCTGTGGTGGTGCG....................... | 20 | 2 | 3 | 0.67 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................................................................................................................................................................ATGGTAGCTGTGGTGG........................... | 16 | 1 | 6 | 0.50 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................................................................................................................................................................ATGGTAGCTGTGGTGGTGCGA...................... | 21 | 3 | 5 | 0.40 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................................................................................................................................................................................TATGGTAGCTGTGGTGG........................... | 17 | 1 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................................................................................................................................................................................................GTAGCTGTGGTGGTGCG....................... | 17 | 1 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................................................ATCAAAACTAAACAAACTTAT....................................................................................................................................................... | 21 | 2 | 3 | 0.33 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................................................................................................................................TGGTAGCTGTGGTGGTGCG....................... | 19 | 2 | 10 | 0.30 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................................................................................................................................................................CAGGGAACGGCGTTACCTCG......................................... | 20 | 3 | 4 | 0.25 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .....................................................................................................................................................................................................................................................................................................................CGATGGTAGCTGTGGTGGT.......................... | 19 | 2 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................................................................................................................................................................ATGGTAGCTGTGGTGGT.......................... | 17 | 1 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................................................................................................................................................................................................GGTAGCTGTGGTGGTGCGA...................... | 19 | 2 | 5 | 0.20 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................................................................................................................................................................................................TAGCTGTGGTGGTGCG....................... | 16 | 1 | 5 | 0.20 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................................................................................................................................................................................CCAAGGGTAGCTGTG............................... | 15 | 1 | 6 | 0.17 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..........................................................................................................................................................................................................................................................................................................................GTAGCTGTGGTGGTGCGA...................... | 18 | 2 | 12 | 0.17 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................................................................................................................................................................................................GGTAGCTGTGGTGGTG......................... | 16 | 1 | 20 | 0.15 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................................................................................TCGGACTGCTGGGATGA..................................................................................................................................... | 17 | 2 | 9 | 0.11 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| .......................................................................................................................................................................................................................................................................................................................ATGGTAGCTGTGGTG............................ | 15 | 1 | 10 | 0.10 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................ATATAAATGCAAAATAATATAAT.................................................................................................................................................................................................................................................. | 23 | 3 | 13 | 0.08 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| .............................................................................................................................................................................................................................CGTCGTTGCGCCTCAA..................................................................................................................... | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ......................................................................................................................................................................................................................................................................................................................GATGGTAGCTGTGGTGGT.......................... | 18 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..CGAGAGATGATCTTAGCTT............................................................................................................................................................................................................................................................................................................................................. | 19 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
Generated: 04/23/2015 at 07:53 PM