ID:

dsi_2452

 Coordinate:

2l:25276-25425 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.9 -4.5

Flybase annnotation

CDS [2l_25426_25875_-]; exon [2l_25426_25875_-]; intron [2l_24825_25425_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATAACAACCACATCCACATTTCCTCCAACGACAACAAAAAAACTTACAAGGTATTTTACCTATTCATTGGAATCGCTTCCTGAAACAACATCTGAACAAAAGTATCTCTGCCAGTCGCCTTTCTACGTAATCGCGGATCAGCCATAAACCGATTTTTATGAAGCTTGTAATATATCATATTTACAAACCACTTGCAGCTTAAAATTTTGGCTATCACACAGTTACACTAAGGGCAATGTTATGCATTTAT
**************************************************************************************************...((...(((((....((........)).....)))))...))...........************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 M053
female body
 M023
head
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
..................................................................................................AAAGTATCTCTGCCAGTCGCCTTTC............................................................................................................................... 25 0 1 21.00 21 18 2 0 1 0 0 0 0 0 0 0 0
..................................................................................................AAAGTATCTCTGCCAGTCGCC................................................................................................................................... 21 0 1 15.00 15 5 10 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................TAATCGCGGATCAGCCATAAACCGAT................................................................................................. 26 0 1 12.00 12 12 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CACACAGTTACACTAAGGGC................ 20 0 1 8.00 8 0 7 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................TCACACAGTTACACTAAGGGC................ 21 0 1 7.00 7 0 7 0 0 0 0 0 0 0 0 0 0
..................................................................................................AAAGTATCTCTGCCAGTCGCCT.................................................................................................................................. 22 0 1 7.00 7 2 5 0 0 0 0 0 0 0 0 0 0
..................................................................................................AAAGTATCTCTGCCAGTC...................................................................................................................................... 18 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TACGTAATCGCGGATCAGCCATAAAC..................................................................................................... 26 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................AAGTATCTCTGCCAGTCGCCT.................................................................................................................................. 21 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0
..................................................................................................AAAGTATCTCTGCCAGTCGCCTTTCTA............................................................................................................................. 27 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACACAGTTACACTAAGGGCAA.............. 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................TAATCGCGGATCAGC............................................................................................................ 15 0 2 3.00 6 0 0 5 0 0 0 0 0 1 0 0 0
.............................................................ATTCATTGGAATCGCTTCCTG........................................................................................................................................................................ 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
..................................................................................................AAAGTATCTCTGCCAGTCGCCTT................................................................................................................................. 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................AATCGCGGATCAGCCATAAACCGAT................................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CGTAATCGCGGATCAGCCATA........................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CTACGTAATCGCGGATCAGCC........................................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
..................................................................................AAACAACATCTGAACAAAAGT................................................................................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................TCGCGGATCAGCCATAAACCGAT................................................................................................. 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AAAGTATCTCTGCCAGTCGCCTTTCT.............................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AAAGTATCTCTGCCAGTCGCCTTT................................................................................................................................ 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ACACTAAGGGCAATGTTATGCA..... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TATCACACAGTTACACTAAGGGCAA.............. 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................GTAATCGCGGATCAG............................................................................................................. 15 0 2 2.00 4 0 0 3 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................TGAAGCTTGTAATATATCATATTTAC.................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................AACAACATCTGAACAAAGGT................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................CTTTCTACGTAATCGCGGATCAGCCG.......................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................AAAAGTATCTCTGCCAGTCGCCTTTC............................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CACACAGTTACACTAAGGAC................ 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................TAAACCGATTTTTATGAAGCT..................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................CTACGTAATCGCGGATCAGAC........................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................AAAGTATCTCTGCCAGTCGC.................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ACAAAAGTATCTCTGCCAGTCGCCTTT................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................CTTTCTACGTAATCGCGGATCAGCCA.......................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................AAAAGTATCTCTGCCAGTCGCCTTT................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TTTTATGAAGCTTGTAATATATCATA....................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATTTACAAACCACTTGCAGCT................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................ACGTAATCGCGGATCAGCCAT......................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AAAGTATCTCTGCCAGTCGCTTTTCTA............................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................ATCGCGGATCAGCCA.......................................................................................................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTCCTGAAACAACATCTGAACA........................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TTTATGAAGCTTGTAATATA............................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CGCCTTTCTACGTAATCGCGG.................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AAAGTATCTCTGCTAGTCGC.................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................GATTTTTATGAAGCTTGTAAT............................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TTTATGAAGCTTGTAATATATCATA....................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCCTGAAACAACATCTAAACAAAAGT................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TTTACAAACCACTTGCAGCTT.................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ACAGTTACACTAATGGCAATG............ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................TGAACAAAAGTATCTCTGCCAGTCGCC................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GGCTATCACACAGTTACACTAAGGGCAA.............. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................ACTAAGGGCAATGTTATGCG..... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTCCTGAAACAACATCTGAACAAAAGT................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TTTTATGAAGCTTGTAATATATCAT........................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AAAGTATCTCTGCCAGTCGCCTTCC............................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AAAGTATCTCTGCCAGTCCCCTTTC............................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................AAAGTATCTCTGCCA......................................................................................................................................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TGAACAAAAGTATCTCTGCCAGTCGCCT.................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................TTACCTATTCATTGGAATCGC.............................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................CATCTGAACAAAAGTATCTCC............................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................ATCGCGGATCAGCCATAAACCGAT................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TACGTAATCGCGGATCAGCCATA........................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTACACTAAGGGCAA.............. 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................ATTGGAATCGCTTCCTGAAAC.................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCCTGAAACAACATCTGAACAAAAGT................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................ACAAAAGTATCTCTGCCAGTC...................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................AAAAGTATCTCTGCCAGTCGCCTT................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TGGCTATCACACAGTTACACTAAGGGC................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TACAAACCACTTGCAGCTTAAAATTT........................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TACACTAAGGGCAATGTTATG....... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AAAGTATCTCTGCCAGT....................................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TTTACAAACCACTTGCAGCT................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................GTAATCGCGGGTCAG............................................................................................................. 15 1 5 0.80 4 0 0 4 0 0 0 0 0 0 0 0 0
..............................................................................................................................GTAATCGCGGGTCAGC............................................................................................................ 16 1 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................GTAATCGCGGGTCAGCAA.......................................................................................................... 18 2 5 0.60 3 0 0 3 0 0 0 0 0 0 0 0 0
..............................................................................................................................GTAATCGCAGATCAGC............................................................................................................ 16 1 5 0.60 3 0 0 3 0 0 0 0 0 0 0 0 0
............................................................................................................................TAGTAATCGCGCATCAGCCAT......................................................................................................... 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................GTAATCGCGGATCAGC............................................................................................................ 16 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CTTAAAATTTTGGTGATCACA................................ 21 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................AGTAATCGCGGATCAGCC........................................................................................................... 18 1 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................GTAATCGTGGATCAG............................................................................................................. 15 1 7 0.29 2 0 0 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................TAACCGCGGATCAGC............................................................................................................ 15 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................GTAATCCCGGATCAGC............................................................................................................ 16 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................AAAGAAACTTACAAGG....................................................................................................................................................................................................... 16 1 17 0.18 3 0 0 0 0 0 0 3 0 0 0 0 0
...............................................................................................................................TAATCGTGGATCAGC............................................................................................................ 15 1 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................CTTAAAATTCTGGCTAGCACT................................ 21 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................AATCGTGGATCAGCAAT......................................................................................................... 17 2 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................TAATCGCGGGTCAGC............................................................................................................ 15 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................TAATCGCGGATCAGA............................................................................................................ 15 1 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................TAATCTCGGATCAGC............................................................................................................ 15 1 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0 0
....................................AAGAAACTTACAAGG....................................................................................................................................................................................................... 15 1 20 0.10 2 0 0 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................TAATTGCGGATCAGC............................................................................................................ 15 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................TAATCGCAGATCAGC............................................................................................................ 15 1 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................TAATCGCGGGTCAGCAA.......................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................AGTTACTCTTCCAGTCGCC................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................TGAAGAAACAGCTGAACAAAA..................................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TATTGTTGGTGTAGGTGTAAAGGAGGTTGCTGTTGTTTTTTTGAATGTTCCATAAAATGGATAAGTAACCTTAGCGAAGGACTTTGTTGTAGACTTGTTTTCATAGAGACGGTCAGCGGAAAGATGCATTAGCGCCTAGTCGGTATTTGGCTAAAAATACTTCGAACATTATATAGTATAAATGTTTGGTGAACGTCGAATTTTAAAACCGATAGTGTGTCAATGTGATTCCCGTTACAATACGTAAATA
*************************************************************************************************...((...(((((....((........)).....)))))...))...........************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR902009
testis
 M025
embryo
 M053
female body
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553488
RT_0-2 hours eggs
.............................................................................................................CGGTCAGCGGAAAGATGCATTAGCGCCT................................................................................................................. 28 0 1 107.00 107 0 48 32 20 6 0 1 0 0 0 0
.................................................................................................................CAGCGGAAAGATGCATTAGCGCCTAGT.............................................................................................................. 27 0 1 25.00 25 0 0 0 14 11 0 0 0 0 0 0
........................................................................................................AGAGACGGTCAGCGGAAAGATGCAT......................................................................................................................... 25 0 1 17.00 17 0 1 3 8 4 1 0 0 0 0 0
....................................................................................TGTTGTAGACTTGTTTTCATAGAG.............................................................................................................................................. 24 0 1 16.00 16 16 0 0 0 0 0 0 0 0 0 0
.............................................................................AGGACTTTGTTGTAGACTTGTTTTCAT.................................................................................................................................................. 27 0 1 15.00 15 0 9 6 0 0 0 0 0 0 0 0
....................................................................................................................................................GGCTAAAAATACTTCGAACATTATAT............................................................................ 26 0 1 13.00 13 1 8 4 0 0 0 0 0 0 0 0
..............................................................AAGTAACCTTAGCGAAGGACTTTGT................................................................................................................................................................... 25 0 1 12.00 12 12 0 0 0 0 0 0 0 0 0 0
...................................................................................TTGTTGTAGACTTGTTTTCATAGAG.............................................................................................................................................. 25 0 1 10.00 10 9 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................AGATGCATTAGCGCCTAGTCGGTAT........................................................................................................ 25 0 1 9.00 9 0 7 1 0 1 0 0 0 0 0 0
..................AAAGGAGGTTGCTGTTGTTTTTTTGAAT............................................................................................................................................................................................................ 28 0 1 9.00 9 0 6 3 0 0 0 0 0 0 0 0
.....................................................................................................CATAGAGACGGTCAGCGGAAAGATGCAT......................................................................................................................... 28 0 1 8.00 8 0 1 4 1 1 0 1 0 0 0 0
..........................................................................................................................................................................................................TTAAAACCGATAGTGTGTCAATGTGAT..................... 27 0 1 8.00 8 0 4 4 0 0 0 0 0 0 0 0
.......................AGGTTGCTGTTGTTTTTTTGAATGT.......................................................................................................................................................................................................... 25 0 1 7.00 7 0 2 4 1 0 0 0 0 0 0 0
...................................................................................TTGTTGTAGACTTGTTTTCATAGAGA............................................................................................................................................. 26 0 1 7.00 7 0 5 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................ACCGATAGTGTGTCAATGTGA...................... 21 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0
.............................................................................................................CGGTCAGCGGAAAGATGCATTAGCGC................................................................................................................... 26 0 1 5.00 5 0 2 2 1 0 0 0 0 0 0 0
...................................................................................................................................................TGGCTAAAAATACTTCGAACATTATAT............................................................................ 27 0 1 5.00 5 0 3 2 0 0 0 0 0 0 0 0
..............................................................................................................GGTCAGCGGAAAGATGCATTAGCGCCT................................................................................................................. 27 0 1 5.00 5 0 2 2 1 0 0 0 0 0 0 0
.......................................................................................................AAGAGACGGTCAGCGGAAAGATGCAT......................................................................................................................... 26 1 1 5.00 5 0 0 0 4 1 0 0 0 0 0 0
............................................................................................................................................CGGTATTTGGCTAAAAATACTTCGAACAT................................................................................. 29 0 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0
.................................................................................................................CAGCGGAAAGATGCATTAGCGCCT................................................................................................................. 24 0 1 4.00 4 0 0 0 3 1 0 0 0 0 0 0
..................................................................................................................AGCGGAAAGATGCATTAGCGCCTAGT.............................................................................................................. 26 0 1 4.00 4 0 0 0 2 2 0 0 0 0 0 0
....................................................................................TGTTGTAGACTTGTTTTCATAGAGA............................................................................................................................................. 25 0 1 4.00 4 2 2 0 0 0 0 0 0 0 0 0
...............................................................................................................GTCAGCGGAAAGATGCATTAGCGCCT................................................................................................................. 26 0 1 4.00 4 0 0 0 4 0 0 0 0 0 0 0
..................................................................................................................................................TTGGCTAAAAATACTTCGAACATTATAT............................................................................ 28 0 1 4.00 4 0 3 1 0 0 0 0 0 0 0 0
............................................................................................................................................CGGTATTTGGCTAAAAATACTTCGA..................................................................................... 25 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0
............AGGTGTAAAGGAGGTTGCTGTTGTTT.................................................................................................................................................................................................................... 26 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0
...........................TGCTGTTGTTTTTTTGAATGTTCCAT..................................................................................................................................................................................................... 26 0 1 3.00 3 0 2 0 1 0 0 0 0 0 0 0
.....................................TTTTTGAATGTTCCATAAAATGGAT............................................................................................................................................................................................ 25 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0
................................................................................................................ACAGCGGAAAGATGCATTAGCGCCTAGT.............................................................................................................. 28 1 1 3.00 3 0 0 0 1 2 0 0 0 0 0 0
....GTTGGTGTAGGTGTAAAGGAGGTT.............................................................................................................................................................................................................................. 24 0 1 3.00 3 2 0 0 1 0 0 0 0 0 0 0
......................................................................................................ATAGAGACGGTCAGCGGAAAGATGCAT......................................................................................................................... 27 0 1 3.00 3 0 0 0 1 2 0 0 0 0 0 0
.......................................................................TAGCGAAGGACTTTGTTGTAGACTTGT........................................................................................................................................................ 27 0 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0
..................................................................................TTTGTTGTAGACTTGTTTTCATAGAG.............................................................................................................................................. 26 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
..................................................................................................................AGCGGAAAGATGCATTAGCGCCT................................................................................................................. 23 0 1 3.00 3 0 0 0 3 0 0 0 0 0 0 0
.......................................................................TAGCGAAGGACTTTGTTGTAG.............................................................................................................................................................. 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TAAAACCGATAGTGTGTCAATGTGAT..................... 26 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0
.............................................................................................................CGGTCAGCGGAAAGATGCAT......................................................................................................................... 20 0 1 3.00 3 1 0 0 0 0 2 0 0 0 0 0
............................................................................................................ACGGTCAGCGGAAAGATGCAT......................................................................................................................... 21 0 1 3.00 3 0 0 0 1 2 0 0 0 0 0 0
...........................................................................................................GACGGTCAGCGGAAAGATGCA.......................................................................................................................... 21 0 1 3.00 3 0 0 0 0 0 3 0 0 0 0 0
........GTGTAGGTGTAAAGGAGGTTG............................................................................................................................................................................................................................. 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
...............................................................................................TGTTTTCATAGAGACGGTCAGCGGAA................................................................................................................................. 26 0 1 3.00 3 2 0 0 0 0 0 1 0 0 0 0
....GTTGGTGTAGGTGTAAAGGAG................................................................................................................................................................................................................................. 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
.......................................................................TAGCGAAGGACTTTGTTGTAGACT........................................................................................................................................................... 24 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0
...............................................................................................................AACAGCGGAAAGATGCATTAGCGCCTAGT.............................................................................................................. 29 2 1 3.00 3 0 0 0 0 3 0 0 0 0 0 0
................GTAAAGGAGGTTGCTGTTGTTTTTT................................................................................................................................................................................................................. 25 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0
...TGTTGGTGTAGGTGTAAAGGAGGT............................................................................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................ATGCATTAGCGCCTAGTCGGTATTTGGCT.................................................................................................. 29 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
..ATGTTGGTGTAGGTGTAAAGGAGGTT.............................................................................................................................................................................................................................. 26 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
.........................................................................................................................AGATGCATTAGCGCCTAGTCGGTATTT...................................................................................................... 27 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................ATGCATTAGCGCCTAGTCGGTATTT...................................................................................................... 25 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................TGTAGACTTGTTTTCATAGAGACGGT......................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.....TTGGTGTAGGTGTAAAGGAGGTT.............................................................................................................................................................................................................................. 23 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................TAAAACCGATAGTGTGTCAATGTGATTC................... 28 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0
................................................................................................................TCAGCGGAAAGATGCATTAGCGCCT................................................................................................................. 25 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
.................................................................................................TTTTCATAGAGACGGT......................................................................................................................................... 16 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.......GGTGTAGGTGTAAAGGAG................................................................................................................................................................................................................................. 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................AGATGCATTAGCGCCTAGTCGGT.......................................................................................................... 23 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.............................................................................................................CGGTCAGCGGAAAGATGCATTAGCGCC.................................................................................................................. 27 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0
TATTGTTGGTGTAGGTGTAAAGGAGGT............................................................................................................................................................................................................................... 27 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0
......TGGTGTAGGTGTAAAGGAGGT............................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GCATTAGCGCCTAGTCGGTAT........................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
......................................................................TTAGCGAAGGACTTTGTTGTA............................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.......GGTGTAGGTGTAAAGGAGGTTGCT........................................................................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AAAACCGATAGTGTGTCAATGTGATT.................... 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
..............GTGTAAAGGAGGTTGCTGTTGTTT.................................................................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.......................AGGTTGCTGTTGTTTTTTTGAAT............................................................................................................................................................................................................ 23 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
........GTGTAGGTGTAAAGGAGGTTGCTGT......................................................................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..................................................................................................TTTCATAGAGACGGTCAGCGGAAAGAT............................................................................................................................. 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.....................................................................CTTAGCGAAGGACTTTGT................................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................AGATGCATTAGCGCCTAGTCGGTATT....................................................................................................... 26 0 1 2.00 2 0 1 0 0 0 0 1 0 0 0 0
........................................................................................................................AAGATGCATTAGCGCCTAGTCGGTAT........................................................................................................ 26 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0
...................................................................................TTGTTGTAGACTTGTTTTCAT.................................................................................................................................................. 21 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0
................GTAAAGGAGGTTGCTGTTGTT..................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
............................GCTGTTGTTTTTTTGAATGTTCCAT..................................................................................................................................................................................................... 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
....................................................................................TGTTGTAGACTTGTTTTCATA................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
............................................................................AAGGACTTTGTTGTAGACTTG......................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................................AGGACTTTGTTGTAGACTTG......................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................................GACGGTCAGCGGAAAGATGCATTAGCG.................................................................................................................... 27 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0
.................................................................................................................................................................................ATAAATGCTTGGTGAACGTCGAATTTT.............................................. 27 1 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CGATAGTGTGTCAATGTGATT.................... 21 0 1 2.00 2 0 0 0 0 0 1 0 1 0 0 0
......................................................................................................................GAAAGATGCATTAGCGCCTA................................................................................................................ 20 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0
................................................................................................GTTTTCATAGAGACGGTCAGCGGAA................................................................................................................................. 25 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................CGGTATTTGGCTAAAAATACTTCGAAC................................................................................... 27 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
................................................................................................................TCAGCGGAAAGATGCATTAGCGCCTAGT.............................................................................................................. 28 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0
.........................................................................................................GAGACGGTCAGCGGAAAGAT............................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................ATAGAGACGGTCAGCGGAAAG............................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................ATAAGTAACCTTAGCGAAGGACTTTGT................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......TGGTGTAGGTGTAAAGGAGGTTGCT........................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................AAGTAACCTTAGCGAAGGACTTTGTT.................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................GAGACGGTCAGCGGAAAGATGCAT......................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................................ATAAGTAACCTTAGCGAGGGACTTTGT................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......GGTGTAGGTGTAAAGGAGGTTGCTG.......................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................ATAAATGCTTGGTGAACGTCGAATTT............................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.ATTGTTGGTGTAGGTGTAAAGGAGGTT.............................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................GTAAAGGAGGTTGCTGTTGTTTT................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GGTATTTGGCTAAAAATACT......................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................CGGTCAGCGGAAAGATGCATTAGCGCCG................................................................................................................. 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...TGTTGGTGTAGGTGTAAAGGA.................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................AAAGGAGGTTGCTGTTGTTTTTT................................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................TAAGGAGGTTGCTGTTGTTTTTTTGAAT............................................................................................................................................................................................................ 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................TTGTTGTAGACTTGTTTTCA................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GTGTCAATGTGATTCCCG................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................ATGTTCCATAAAATGGATAAGTAACCT................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................CGGTATTTGGCTAAAAATACT......................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................CGGTATTTCGCTAAAAATAC.......................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................ATATACTATAAATGCTTGGTGAACGT...................................................... 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................GGCTAAAAATACTTCGAACATTATA............................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TGTGATTCCCGTTACA........... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................TGCTGTTGTTTTTTTGAATGT.......................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............GTGTAAAGGAGGTTGCT........................................................................................................................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................GAGTAACCTTAGCGAAGGACTTTGT................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............GTGTAAAGGAGGTTGCTGTTGTT..................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........CGTAGGTGTAAAGGAGGTTGCTGT......................................................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GCATTAGCGCCTAGTCGGTATTT...................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TAAAACCGATAGTGTGTGAATGTGATT.................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................GCTGTTGTTTTTTTGAATGTT......................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TAGAGACGGTCAGCGGAAAGATGCAT......................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................ATAAATGCTTGGTGAACGTCGAAT................................................. 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AAAACCGATAGTGTGTCAATGTGATTCCC................. 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................GATGCATTAGCGCCTAGTCGGTATT....................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..ATGTTGGTGTAGGTGTAAAGGAGGT............................................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................TAGACTTGTTTTCATAGAG.............................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GTGTCAATGTGATTCCCGTTACAGT......... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................TCGTTGTAGACTTGTTTTCATAGAG.............................................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................AGAGACGGTCAGCGGAAAGATGCATTAG...................................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................TCATAGAGACGGTCAGCGGAAAGATGCAT......................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................AAGATGCATTAGCGCCTAGTCGGTATT....................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................AAGATGCATTAGCGCCTAGTCGGTATTT...................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................GGTATTTGGCTAAAAATACTTCGAAC................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................TGCATTAGCGCCTAGTCGGTA......................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................CGGTATTTGGCTAAAAATGCTTCGAA.................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................CGGTCAGCGGAAAGATGCATTAGCG.................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
TATTGTTGGTGTAGGTGTAAAGGAGGTT.............................................................................................................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................GTGTGTCAATGTGATTCCCGT............... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGATGCATTAGCGCCTAGTCGGTATT....................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TTAAAACCGATAGTGTGTCAATGTGATT.................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................TGGCTAAAAATACTTCGAACATTATAA............................................................................ 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....TTGGTGTAGGTGTAAAGGAGG................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................ATAGTATAAATGTTTGGTGAA......................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................AGCGAAGGACTTTGTTGTAGACTTGT........................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................GAACGTCGAATTTTAAAACCGATAGT.................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................TCATAGAGACGGTCAGCGGAA................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................GTTTTCATAGAGACGGTCAGCGGA.................................................................................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................AAAGATGCATTAGCGCCTAGTCGGT.......................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.............................CTGTTGTTGTTTTGAACGTTCCAT..................................................................................................................................................................................................... 24 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................ATGTGATTCCCGTTACAATA........ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....GTTGGTGTAGGTGTAAAGGGGGTT.............................................................................................................................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CCGATAGTGTGTCAATGTGATTCCC................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................CGAAGGACTTTGTTGTAGACT........................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TGGCTAAAAATACTTCGAACATTATA............................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GTGTCAATGTGATTCCCGTT.............. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................GACGGTCAGCGGAAAGATGCAT......................................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.............GGTGTAAAGGAGGTTGCTGT......................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................TTCATAGAGACGGTCAGCGGAAAG............................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................TGTTTTCATAGAGACGGTCAGCGGA.................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................TGAATGTTCCATAAA.................................................................................................................................................................................................. 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................AGGTTGCTGTTGTTTTT.................................................................................................................................................................................................................. 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TGACGGTCAGCGGAAAGATGCA.......................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.............................................................AAAGTAACCTTAGCGAAGGACT....................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................AAGCGGAAAGATGCATTAGCGCCTAGT.............................................................................................................. 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.............GGTGTAAAGGAGGTTGCTGTT........................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..ATGTTGGTGTAGGTGTAAAGGAGCTT.............................................................................................................................................................................................................................. 26 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..............................TGTTGTTTTTTGGAATGTTCC....................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................CAATGTGATTCCCGTT.............. 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................AAAGAGACGGTCAGCGGAAAGATGCAT......................................................................................................................... 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................CGGTATTTGGCTAAAAATACTTCGAACA.................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAGACTTGTTTTCATAGAGAC............................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................AGACTTGTTTTCATAGAGACGGTCAG...................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............GTGTAAAGGAGGTTGCTGTTG....................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................AGTAACCTTAGCGAAGGACT....................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................CAGCGGAAAGATGCATTAGCGCCTAGTC............................................................................................................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................GGTGAACGTCGAATTTTAAAA.......................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................ACGGTCAGCGGAAAGATGCATTAGCGCCT................................................................................................................. 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....TTGGTGTAGGTGTAAAGGAGGTTGCT........................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...TGTTGGTGTAGGTGTAAAG.................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................ATGGATAAGTAACCTTAGCGA............................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................TTGTTTTCATAGAGACGGTCAGCGG................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................AAATGCTTGGTGAACGTCGAATTTT.............................................. 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................ATAAGTAACCTTAGCGAA............................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........GTAGGTGTAAAGGAGGTTGCTGTTGTT..................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................AAGTAACCTTAGCGAAGGACTTTGTTGT................................................................................................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........GTAGGTGTAAAGGAGGTTGCTGTTGT...................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................TAGACTTTTTTTCATAGAG.............................................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................CGGTCAGCGGAAAGA.............................................................................................................................. 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AAAACCGATAGTGTGT.............................. 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TAGCGCCTAGTCGGTATTTGG.................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................AGACTTGTTTTCATAGAGACGGTC........................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
............................................................................AAGGACTTTGTTGTAGACTTGTTTTCAT.................................................................................................................................................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................ATATAGTATAAATGCTTGGTGAAC........................................................ 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................TGTCGTAGACTTGTTTTCATAGAG.............................................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................ATGTTGTAGACTTGTTTTCATAGAG.............................................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................ATAAATGCTTGGTGAACGTCGAATT................................................ 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................AGCGAAGGACTTTGTTGTAGACTTGTTTT..................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CGTCGAATTTTAAAACCGATAGTGTGT.............................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................TTTCATAGAGACGGTCAGCGGAAAGAA............................................................................................................................. 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AAAACCGATAGTGTGTCAATGTGATTCC.................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................GTTGTAGACTTGTTTTCATAGAG.............................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................CGGTCAGCGGAAAGATGCATT........................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................TGTGTGTCAATGTGATTCCCGT............... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............GTGTAAAGGAGGTTGCTGT......................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................TGTAGACTTGTTTTCATAGAGA............................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................AGTTGTAGACTTGTTTTCATAGAG.............................................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................AGCGCCTAGTCGGTATTTGGCTAA................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AAACCGATAGTGTGTCAATGTGATT.................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................AAGGAGGTTGCTGTTGTTTTTTTGAATGT.......................................................................................................................................................................................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................TCAGCGGAAAGATGCATT........................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................AGCGAAGGACTTTGTTGTAGA............................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................TTCATAGAGACGGTCAGCGGAAAGA.............................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................AAGATGCATTAGCGCCTAGTCGGT.......................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TGGTGAACGTCGAATTTTAAA........................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................ACGGTCAGCGGAAAGATGCATT........................................................................................................................ 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................GCGGAAAGATGCATTAGCGCCT................................................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................TGTTGTAGACTTGTTTTC.................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................ATGCATTAGCGCCTAGTCGGTATT....................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................GGCTAAAAATACTTCGAACATTAT.............................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................CTAGTCGGTATTTGGCTAAAAATACTT........................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........TGTAGGTGTAAAGGAGGTTGCTGTT........................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................CGGTCAGCGGAAAGATGCATTAGCGGCT................................................................................................................. 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TGGCTAAAAATACTTTGAACATTATAT............................................................................ 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TTTAAAACCGATAGTGTGTCAATGTGAT..................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................TTGTTGTAGACTTGTTTTCATAGA............................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................AGGACTTTGTTGTAGACTTGTTTT..................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................TCGGTATTTGGCTAAAAATACTTCGA..................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................AAGAGACGGTCAGCGGAAAGATGCATT........................................................................................................................ 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......GGTGTAGGTGTAAAGGAGGT............................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................TGTAGACTTGTTTTCATAGAG.............................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TGGCTAAAAATACTTCGAACATTAT.............................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...TGTTGGTGTAGGTGTAAAGGAGGTT.............................................................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAGATGCATTAGCGCCTAGTCGGTA......................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CGATAGTGTGTCAATGTGATTCCCGT............... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................TTGTTGTAGACTTGTTTTCATAGAGAC............................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................AGACTTGTTTTCATAGAGACGGT......................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................TCATAGAGACGGTCAGCGGAAAGATGC........................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................CGGGCAGCGGAAAGATGCATTAGCGCCT................................................................................................................. 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CGATAGTGTGTCAATGTG....................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................TAGAGTCGTTTTCTTAGAGACG........................................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0
............................................................................................ACTTGTTTTCATAGAG.............................................................................................................................................. 16 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................TGTTGTAGACTTGTT....................................................................................................................................................... 15 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................TTGTTGTAGACTTGTT....................................................................................................................................................... 16 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................GGACTTTATGGTAGAGTTGTTT...................................................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................TTCCGTAGAGACGGTCAGCAG................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1
..................................................................................TCTGTTGTTGACTTCTTTTCAT.................................................................................................................................................. 22 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0
........................................................................AGCGATGGAGTTTGTTGT................................................................................................................................................................ 18 2 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................GAATTTTAAACCGATAGTGT................................ 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................ATGTTGGGAGACCGTCGAA.................................................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:25226-25475 - dsi_2452 ATAACAACC---------------A---CA------TCCACATTTCCTC------CAACGA---CAACAAAA---------AAACTTACAAGGTATTTTACCT-ATTCATTGGAAT------------------------CGCTTCCTGAA---------ACAACATCTGAA-----------------------CAAAAGTATCTCTGCCAGTCGCCTTTCTACGTAATCGCGGATCAGCCATAAACCGATTTT------------------------------TATGA---AGCTT----------------------------------------------------------------------------------------------------------------GTAATATATCATATTTAC----AAACCACTTGC-AGCTTAAAATTTTGGCTA-------TCA-----------------CACAGTTACACTA--AG-----------GGCAATGTTATGCAT---------------------------TTAT
droSec2 scaffold_14:38594-38843 - ATAACAACC---------------A---CA------TCCACATTTCCTC------CAACGA---CAACAAAA---------AAACTTACAAGGTATTTTACCT-ATTCATTGGAAT------------------------CGCTTCCTGAA---------ACAACATCTGAA-----------------------CAAAAGTATCTCTGCCAGTCGCCTTTCTACGTAATCGCGGATTAGCCATAAACCGATTTT------------------------------TATGA---AGCTT----------------------------------------------------------------------------------------------------------------GTAATATATCATATTTAC----AAACCACTTGC-AGCTTAAAATTTTGGCTA-------TCA-----------------CACAGTTACACTA--AG-----------GGCAATGTTATGCAT---------------------------TTAT
dm3 chr2L:33646-33894 - ATAACAACC---------------A---CA------TCCACATTTCCTC------CAACGA---CAACAACA---------AAACTTGCAAGGTATTTTACCT-ATTCATTGGAAT------------------------CGCTACCTGAA---------AAAACATCTGAA-----------------------CAAAAGTATCTCTGCCAGTCGCCTTTCAACGTAATCGCGGATCAGTCATAAACCGATTTT------------------------------CATGA---AGCTT----------------------------------------------------------------------------------------------------------------GTAATATATCATATTTAC----AAACCATTTGC-AGCTTAAAATTTTGGCTA-------TCA-----------------CACAGTTACACCCTTAT-----------AGCAATGTAATG------------------------------ATAT
droEre2 scaffold_4929:59926-60193 - ATAACAACC---------------A---CA------TCAACATTTCCTC------CAACAA---CAACAACA---------AAAGTTGCAAGGTATTTTACCT-ATCGATTTCAAT------------------------CGCGCTCTGAA---------ACAACATCTGAA-----------------------CAAAAGTATCTCTGAAAGGCGACTTTCTACGTAGTCGCGGCTCAGTCATAAACCGATTTT------------------------------TGTGT---AGCTT----------------------------------------------------------------------------------------------------------------G-AATATATCATACTTAC----ATACCACGTGC-AGCTTAAAATTTTGGCTA-------TCA-----------------CACAGTTACACTCTTAT-----------AGCAATCTTATGCATTTTTTA----------CATTCAATGTGATAT
droYak3 2L:27156-27421 - ATAACAAGC---------------A---CA------TCAACATTTCCTC------CAACGA---CAACATCA---------AAACTTGCAAGGTATTTTACCT-ATCCATTGCAAT------------------------CACGCTCTGAA---------ACAACATCTGAA-----------------------CAAAAGTATC-------------TTTTTACGTAATCGCGGCGCAGTCATAAGCCGATTTT------------------------------CGTAT---AGCTT----------------------------------------------------------------------------------------------------------------CTAATATACCATACTTAC----ATACCACGTGC-AGCTTAAAATTTTGGCTA-------TCA-----------------CACAGTTACACTCTTAT-----------AGCAAAGTTATGCATTTTTTTACAAGTTTTACATTCAAATTGATAT
droEug1 scf7180000409154:30367-30653 - ACAACAACC---------------A---CG---------CCATTTCC---AC---CACCTA---CAACAA-A---------AAACTTTCAAGGTATTTTCAAT-AGCC-CCGCGAT------------------------AGCGCCCTGAA---------ACGCCGTCTGAC-----------------------CTATAGTTTTTTTATCAGTAGCCATTCACCGCAATTGCAACTCAGTCATCTGCTGGCTTT-ATA------GTTATT--------------TGAAT---AGTTT----------------------------------------------------------------------------------------------------------------TTAAGCTCTTCTAGACGC----AAACCGCGCGT-AGCTTTGAAATTGGTTTA-------CCACTTTATGCAAAA---AAAACAGTTACACTCAACA-----------ATTTTGATTAGGAAGTTGTTG----------TATCTGTACAGTTAC
droBia1 scf7180000301455:38131-38363 - ACAACAACT---------------A---CATCCACGACACCATTTCC---AT---CGACAA---CAACAACA---------AAACTAGCAAGGTATTTTCACT-AGCCATTGCG----------------------------CG----------------------TCTGAA-----------------------G------CTCACTGCCAGCCGCCACCTTAATCAATTTCAACTCAGTCATTAGCTGGCTTT-GAT------ATTATT--------------CGCAT---AGTTT----------------------------------------------------------------------------------------------------------------ATAAGCTCTCATTCTCGC----ATTCCACATGC-AGCTTTAAAATTTGGCTA-------CCACATTATACAGAA---CACCCAGTTACAC---------------------------------------------------------------
droTak1 scf7180000413017:536200-536456 + ACCACAACT---------------A---CAACCACGACACCATTCCC---AT---CTACGA---CAACAACA---------AAACTAGCAAGGTATTTTCACT-AGCCATTGCGAT------------------------AGCGCCTTAGA---------ACAACGTAGGAA-----------------------GTAAAGTCTCACTGCCAGCGGCCATCCGAAGCAATTGCAACTCAGTCATTAGCTGGCTTT-ATT------ATTATT--------------TGCAT---AGTTT----------------------------------------------------------------------------------------------------------------GTAAGTTCTCATTCTCGC----ATAACACATGC-AGCTTGAAAGTTTGGCTA-------TCACATTATACAGAACATTAC--------ACACTCGC---------------------------------------------------------
droEle1 scf7180000490216:5889-6165 + ACAACAACC---------------A---CG------ACATCACTTCCAC------CAACAACAACAACAAAA---------AAACAAGCAAGGTATTCTGACC-AGTCATTGCAAA------------------------AGCGCCCTGAA---------ACCACGTTTAAA-----------------------CTTAATTTTCTCTGGCAGTCGCTCTCTAACGCAAATACAACGCAGTTATTAGCTGGCTTT-ATT------ATTATT--------------TATAT---ACTTT----------------------------------------------------------------------------------------------------------------ATAAGCTCTCATTCTCGC----ATACCACGTGC-ATTTTGAAAATTTGGC-------------ATAATACAGAA---CACACAGTTACACTCGCCC-----------AGTATGGCTAGGTAGTTTTT----------------------TTAT
droRho1 scf7180000779252:96648-96924 + ACAC------------------------------------CATTTTC---AC---CAC------CAACAACA---------AAACTAGCAAGGTATTTTCACT-AGTCATTGCAGA------------------------AGCTCCCTGAA---------ACATCGTTTGAA-----------------------CTAAAGTCTCTCTGCCAGCCGCTCGC-----TAATTGCAACTCAGTTATTACATGGCTTT-ATT------ATTATT--------------TATAT---TCTTT-----------------------------------------------------------------------------------------------------ATTTATACATTGTAAGCTCTCATTTCTGC----A-------TCG-ATCTTGAAAATTTGGCA---------CACATTATACAGAA---CACACAGCTACACTCGCCA-----------AGTATAGTTAGACAGTTTTGTA-------ATCATGCTATCTGATAT
droFic1 scf7180000453904:1465732-1466042 - ACAACAAAAA---CTACAAGTACAA---CAACCACCACACCACCTCC---AC---CAACGA---CAACAGAA---------AAACCAGCAAGGTATTTTCACT-AGCCATTGCGAT------------------------AGCGCCCTAAA---------AGACTGTCTTAA-----------------------GTGAAGTCTCCCTGGCAGTCGCCCTCTAACGCAACTGCAACTCAGTCATTAGCTGGCTTC-ATT------ACTATT---------------GC-T---AGTCT----------------------------------------------------------------------------------------------------------------TTAAGCTCTCATTCCGTC----ATA-CAAGTGC-AGTTTGAAAAATTGGCTTTGAAAGATCACACTATACAGAA---CACACAACTACACCCGA---------------CATGTTTAGGCAGTTTTTTA-------A-CATGCTA-CTGATAT
droKik1 scf7180000302401:508174-508414 + ATAACAACT---------------A---CA------CCACA---GCC---CCCAACGACAACAACAACAACA---------AAAGTAGCAAGGTATTGTCACCAATTGATAGCGAA---ATG------------------AGCGCCAAGACACAGGTC-------------------------------------------TTTCTCTGCCAGTCGCCTTCTATCGCAATCGCCACTAAGTCATTAGCCGGCTTTCAGT------GTTATAGTTTAGTT------TATA------TTC----------------------------------------------------------------------------------------------------------------CTAAGCTCTCATTCC----------------GC-CGCTTGCGATTTTGGCAA---------ACATTATACAGAA-AACACACAGCTACACG--------------------------------------------------------------
droAna3 scaffold_12916:2017127-2017405 - ACTACAAGT---------------A---CA------ACCACACCACCACCAT---CAACGA---CAACCACA---------AAAAGGTATAGGTATTTTGGCAGACCCGTTGCCAA------------------------AA------------------A--------------------GAGAAATACATGCAGATAGCTGACTC---TAGGCGCCTT-------------------------------------------------------------------------AGTCTGTAAGATCGCAT-AGAACACACTGC--------CACAAAATACAGTACGTACTAAGGTCGGAGCCATAAGTAGTATGGCCATCCGACGAGTTGTGGACTTCA-----------------------TCCAT----CTATCTATTAT-AAGCCAGGACTTTCC------------------------A---ACCACAGTTACACCCGCTT----------------AGTTAGCTAG---------------------------TTCT
droBip1 scf7180000396728:671187-671469 - ACTACAAGT---------------A---CA------ACCACACCACCACCAT---CAACGA---CAACTCCA---------AAAAGGTATAGGTATTTTGAGAGACCCATTGCCAA------------------------AA------------------A--------------------GAGA-------------AATTCTCGCAGATAGCTGACCTTAGGCGC---------------------------------------------------------------CTTAGTTCGTAAGATCTCATTAGATCACACCAC--------CACAAAATAAAGTACATACTAAGGTCGGAGCCATATACATCATGGCCATCCGACAAGT-----------------------TCTGGACCTCATCCAT----CTATCTATTAC-AAGCCAGGACTTTCAA---------------------AAA---AACACAAATACACCCGCTT----------------AGTTAGATAG---------------------------TTCT
dp5 4_group2:112216-112549 + ACAACAACCAGCACAACAAAAACAACATCAACTACAACACCACCATC---AC---CAACGA---CAACAACAACAACAACGAAACCCCAAAGGTATTTCGAGAGTCACATTGCGTTAGCATT------------------AGCGCCTGCATTCAATTCATTCACCGTTTGAGAGCAACAAAGTCAAA--CTAGCAGACTCGTCTCTCCGTTTTTCGTCTCTCGGTTTT---------------------------CCCTTGTGCAGTTTTAGTTTGCTTTTAGGC-----CACAGTTT----------------------------------------------------------------------------------------------------------------GTAAGTTCTCATTCG-GCAATCATCTCACGCGAAAGCTTTTCAAATCGGCT---------CACATTATACACAG-ACTAC--------ACACTCTC-----------CGGAACGGTATG--------------------------TCATAGAT
droPer2 scaffold_8:3782191-3782527 - ACAACAACCAGCACAACAAAAACAACATCAACTACAACACCACCACC---ACCAACGACAA---CAACAACAACAACAACGAAACCCCAAAGGTATTTCGAGAGTCACATTGCGTTAGCATT------------------AGCGCCTGCATTCAATTCATTCACCGTTTGAGAGCAACAAAGTCAAA--CTAGCAGACTCGTCTCTCCGTTTTTCGTCTCTCGGTTTT---------------------------CCCTTGTGCAGTTTTAGTTTGCTTTTAGGC-----CACAGTTT----------------------------------------------------------------------------------------------------------------GTAAGTTCTCATTCG-GCAATCATCTCACGCGAAAGCTTTTCAAATCGGCT---------CACATTATACACAG-ACTAC--------ACACTCTC-----------CGGAACGGTATG--------------------------TCATAGAT
droWil2 scf2_1100000004851:135743-135802 + AAAACAACA---------------A---CC------CCGACACCACCACCAC---CGACAT---CAACATCC---------AAATTATCAAGGTATTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13246:175243-175262 + ACAACAAAA---------------A---CA------ACTACATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:214461-214526 + AGAACAACA---------------A---CA------ACAACACCAGCAA------CAACTA---CAACTACAACTACATTGCAACCTTCAAGGTACTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15252:17067919-17068203 - ACAACAACA---------------C---CA------ACCACACTTCAAC------------------------------------CAACAAGGTACTTTCTAAGCCAAAAATTGGTAAATTCTGTACCACATATTTAGTACGCGTCATCTA---------GTTGCATTTTTA-----------------------CTATATTCTCT--GCGGGGCCC---------------------------------------------------------------------------------------------------AGACTGCCTTACTTTCG--CAATGATGTCTGCCTTACTTTCGCAAACGAAATATTTATGAGTGTGTCATTAGTTGTCAACTTTA-------------A---------ACTGC----AA------AAC-ACCATAAGATTTTCGA------------CATTACACAGAT---TAC--------ACATTTATACTGCGCTAAAGCTAATTGTTCTGAC---------------------------TGAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATAACAACC---------------A---CA------TCCACATTTCCTC------CAACGA---CAACAAAA---------AAACTTACAAGGTATTTTACCT-ATTCATTGGAAT------------------------CGCTTCCTGAA---------ACAACATCTGAA-----------------------CAAAAGTATCTCTGCCAGTCGCCTTTCTACGTAATCGCGGATCAGCCATAAACCGATTTT------------------------------TATGA---AGCTT----------------------------------------------------------------------------------------------------------------GTAATATATCATATTTAC----AAACCACTTGC-AGCTTAAAATTTTGGCTA-------TCA-----------------CACAGTTACACTA--AG-----------GGCAATGTTATGCAT---------------------------TTATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................AAAGTATCTCTGCCAGTCGCCTTTC.....................................................................................................................................................................................................................................................................................................................................................25121.0021002100000018000000
.....................................................................................................................................................................................................AAAGTATCTCTGCCAGTCGCC.........................................................................................................................................................................................................................................................................................................................................................21115.0015001000000005000000
..................................................................................................................................................................................................................................TAATCGCGGATCAGCCATAAACCGAT.......................................................................................................................................................................................................................................................................................................................26112.0012000000000012000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-----------------CACAGTTACACTA--AG-----------GGC...........................................2018.00800701000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCA-----------------CACAGTTACACTA--AG-----------GGC...........................................2117.00700700000000000000
.....................................................................................................................................................................................................AAAGTATCTCTGCCAGTCGCCT........................................................................................................................................................................................................................................................................................................................................................2217.00700500000002000000
.....................................................................................................................................................................................................AAAGTATCTCTGCCAGTC............................................................................................................................................................................................................................................................................................................................................................1814.00400000000004000000
..............................................................................................................................................................................................................................TACGTAATCGCGGATCAGCCATAAAC...........................................................................................................................................................................................................................................................................................................................2613.00300000000003000000
......................................................................................................................................................................................................AAGTATCTCTGCCAGTCGCCT........................................................................................................................................................................................................................................................................................................................................................2113.00300300000000000000
.....................................................................................................................................................................................................AAAGTATCTCTGCCAGTCGCCTTTCTA...................................................................................................................................................................................................................................................................................................................................................2713.00300000000003000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------CACAGTTACACTA--AG-----------GGCAA.........................................2113.00300000000003000000
..................................................................................................................................................................................................................................TAATCGCGGATCAGC..................................................................................................................................................................................................................................................................................................................................1523.00600000010050000000
........................................................................................................ATTCATTGGAAT------------------------CGCTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200200000000000000
.....................................................................................................................................................................................................AAAGTATCTCTGCCAGTCGCCTT.......................................................................................................................................................................................................................................................................................................................................................2312.00200000000002000000
...................................................................................................................................................................................................................................AATCGCGGATCAGCCATAAACCGAT.......................................................................................................................................................................................................................................................................................................................2512.00200000000002000000
................................................................................................................................................................................................................................CGTAATCGCGGATCAGCCATA..............................................................................................................................................................................................................................................................................................................................2112.00200000000002000000
.............................................................................................................................................................................................................................CTACGTAATCGCGGATCAGCC.................................................................................................................................................................................................................................................................................................................................2112.00200200000000000000
.....................................................................................................................................................AA---------ACAACATCTGAA-----------------------CAAAAGT.........................................................................................................................................................................................................................................................................................................................................................................2112.00200200000000000000
.....................................................................................................................................................................................................................................TCGCGGATCAGCCATAAACCGAT.......................................................................................................................................................................................................................................................................................................................2312.00200000000002000000
.....................................................................................................................................................................................................AAAGTATCTCTGCCAGTCGCCTTTCT....................................................................................................................................................................................................................................................................................................................................................2612.00200000000002000000
.....................................................................................................................................................................................................AAAGTATCTCTGCCAGTCGCCTTT......................................................................................................................................................................................................................................................................................................................................................2412.00200000000002000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTA--AG-----------GGCAATGTTATGCA................................2212.00200000000002000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-------TCA-----------------CACAGTTACACTA--AG-----------GGCAA.........................................2512.00200000000002000000
.................................................................................................................................................................................................................................GTAATCGCGGATCAG...................................................................................................................................................................................................................................................................................................................................1522.00400000000130000000
...............................................................................................................................................................................................................................................................................................TGA---AGCTT----------------------------------------------------------------------------------------------------------------GTAATATATCATATTTAC----...................................................................................................................................2611.00100000000001000000
.........................................................................................................................................................................................................................CTTTCTACGTAATCGCGGATCAGCCG................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
....................................................................................................................................................................................................AAAAGTATCTCTGCCAGTCGCCTTTC.....................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
...................................................................................................................................................................................................................................................TAAACCGATTTT------------------------------TATGA---AGCT..........................................................................................................................................................................................................................................................................2111.00100010000000000000
.....................................................................................................................................................................................................AAAGTATCTCTGCCAGTCGC..........................................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
...........................................................................................................................................................................A-----------------------CAAAAGTATCTCTGCCAGTCGCCTTT......................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
.........................................................................................................................................................................................................................CTTTCTACGTAATCGCGGATCAGCCA................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
....................................................................................................................................................................................................AAAAGTATCTCTGCCAGTCGCCTTT......................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
............................................................................................................................................................................................................................................................TTT------------------------------TATGA---AGCTT----------------------------------------------------------------------------------------------------------------GTAATATATCATA............................................................................................................................................2611.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAC----AAACCACTTGC-AGCT...................................................................................................................2111.00100000000001000000
...............................................................................................................................................................................................................................ACGTAATCGCGGATCAGCCAT...............................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
....................................................................................................................................................................................................................................ATCGCGGATCAGCCA................................................................................................................................................................................................................................................................................................................................1511.00100000000001000000
...............................................................................................................................................TTCCTGAA---------ACAACATCTGAA-----------------------CA..............................................................................................................................................................................................................................................................................................................................................................................2211.00100000000001000000
.............................................................................................................................................................................................................................................................TT------------------------------TATGA---AGCTT----------------------------------------------------------------------------------------------------------------GTAATATA.................................................................................................................................................2011.00100000000001000000
......................................................................................................................................................................................................................CGCCTTTCTACGTAATCGCGG........................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
.........................................................................................................................................................................................................................................................GATTTT------------------------------TATGA---AGCTT----------------------------------------------------------------------------------------------------------------GTAAT....................................................................................................................................................2111.00100000000001000000
.............................................................................................................................................................................................................................................................TT------------------------------TATGA---AGCTT----------------------------------------------------------------------------------------------------------------GTAATATATCATA............................................................................................................................................2511.00100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAC----AAACCACTTGC-AGCTT..................................................................................................................2111.00100010000000000000
........................................................................................................................................................................TGAA-----------------------CAAAAGTATCTCTGCCAGTCGCC.........................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTA-------TCA-----------------CACAGTTACACTA--AG-----------GGCAA.........................................2811.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTA--AG-----------GGCAATGTTATGCG................................2011.00100000000001000000
...............................................................................................................................................TTCCTGAA---------ACAACATCTGAA-----------------------CAAAAGT.........................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
............................................................................................................................................................................................................................................................TTT------------------------------TATGA---AGCTT----------------------------------------------------------------------------------------------------------------GTAATATATCAT.............................................................................................................................................2511.00100000000001000000
.....................................................................................................................................................................................................AAAGTATCTCTGCCA...............................................................................................................................................................................................................................................................................................................................................................1511.00100000000001000000
........................................................................................................................................................................TGAA-----------------------CAAAAGTATCTCTGCCAGTCGCCT........................................................................................................................................................................................................................................................................................................................................................2811.00100100000000000000
.................................................................................................TTACCT-ATTCATTGGAAT------------------------CGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
....................................................................................................................................................................CATCTGAA-----------------------CAAAAGTATCTCC...................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
....................................................................................................................................................................................................................................ATCGCGGATCAGCCATAAACCGAT.......................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
..............................................................................................................................................................................................................................TACGTAATCGCGGATCAGCCATA..............................................................................................................................................................................................................................................................................................................................2311.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACACTA--AG-----------GGCAA.........................................1611.00100000000001000000
............................................................................................................ATTGGAAT------------------------CGCTTCCTGAA---------AC.................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
................................................................................................................................................TCCTGAA---------ACAACATCTGAA-----------------------CAAAAGT.........................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
...........................................................................................................................................................................A-----------------------CAAAAGTATCTCTGCCAGTC............................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
....................................................................................................................................................................................................AAAAGTATCTCTGCCAGTCGCCTT.......................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTA-------TCA-----------------CACAGTTACACTA--AG-----------GGC...........................................2711.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TAC----AAACCACTTGC-AGCTTAAAATTT...........................................................................................................2611.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTA--AG-----------GGCAATGTTATG..................................2111.00100000000001000000
.....................................................................................................................................................................................................AAAGTATCTCTGCCAGT.............................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAC----AAACCACTTGC-AGCT...................................................................................................................2011.00100000000001000000
.................................................................................................................................................................................................................................GTAATCGCGGATCAGC..................................................................................................................................................................................................................................................................................................................................1620.50100000000010000000
..................................................................................................................................................................................................................................TAATCGCGGATCAGA..................................................................................................................................................................................................................................................................................................................................1590.11100000000010000000
droSec2
ATAACAACC---------------A---CA------TCCACATTTCCTC------CAACGA---CAACAAAA---------AAACTTACAAGGTATTTTACCT-ATTCATTGGAAT------------------------CGCTTCCTGAA---------ACAACATCTGAA-----------------------CAAAAGTATCTCTGCCAGTCGCCTTTCTACGTAATCGCGGATTAGCCATAAACCGATTTT------------------------------TATGA---AGCTT----------------------------------------------------------------------------------------------------------------GTAATATATCATATTTAC----AAACCACTTGC-AGCTTAAAATTTTGGCTA-------TCA-----------------CACAGTTACACTA--AG-----------GGCAATGTTATGCAT---------------------------TTATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
ATAACAACC---------------A---CA------TCCACATTTCCTC------CAACGA---CAACAACA---------AAACTTGCAAGGTATTTTACCT-ATTCATTGGAAT------------------------CGCTACCTGAA---------AAAACATCTGAA-----------------------CAAAAGTATCTCTGCCAGTCGCCTTTCAACGTAATCGCGGATCAGTCATAAACCGATTTT------------------------------CATGA---AGCTT----------------------------------------------------------------------------------------------------------------GTAATATATCATATTTAC----AAACCATTTGC-AGCTTAAAATTTTGGCTA-------TCA-----------------CACAGTTACACCCTTAT-----------AGCAATGTAATG------------------------------ATATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................GTAATCGCGGATCAGCAT................................................................................................................................................................................................................................................................................................................................18202.054100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000001000000000000000000000000000000000100000000000000000000000000300000000000000000000000000000000000020010000000000010000000000000000000000000000000000010000810070000004000000000000000000100000000000
.........................................................................................................TTCATTGGAAT------------------------CGCTACCTGA.............................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TTTACCT-ATTCATTGGAAT------------------------CGCTACC................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................................................AA---------AAAACATCTGAA-----------------------CAAAAGT.........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................AACCGATTTT------------------------------CATGA---AGCTT----------------------------------------------------------------------------------------------------------------G........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................GTAATCGCGGATCAGCA.................................................................................................................................................................................................................................................................................................................................1790.2220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................CGTAATCGCGGATCAGCAT................................................................................................................................................................................................................................................................................................................................19110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.................................................................................................................................................................................................................................GTAATCGCGGATCAGAAT................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ATAACAACC---------------A---CA------TCAACATTTCCTC------CAACAA---CAACAACA---------AAAGTTGCAAGGTATTTTACCT-ATCGATTTCAAT------------------------CGCGCTCTGAA---------ACAACATCTGAA-----------------------CAAAAGTATCTCTGAAAGGCGACTTTCTACGTAGTCGCGGCTCAGTCATAAACCGATTTT------------------------------TGTGT---AGCTT----------------------------------------------------------------------------------------------------------------G-AATATATCATACTTAC----ATACCACGTGC-AGCTTAAAATTTTGGCTA-------TCA-----------------CACAGTTACACTCTTAT-----------AGCAATCTTATGCATTTTTTA----------CATTCAATGTGATATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
ATAACAAGC---------------A---CA------TCAACATTTCCTC------CAACGA---CAACATCA---------AAACTTGCAAGGTATTTTACCT-ATCCATTGCAAT------------------------CACGCTCTGAA---------ACAACATCTGAA-----------------------CAAAAGTATC-------------TTTTTACGTAATCGCGGCGCAGTCATAAGCCGATTTT------------------------------CGTAT---AGCTT----------------------------------------------------------------------------------------------------------------CTAATATACCATACTTAC----ATACCACGTGC-AGCTTAAAATTTTGGCTA-------TCA-----------------CACAGTTACACTCTTAT-----------AGCAAAGTTATGCATTTTTTTACAAGTTTTACATTCAAATTGATATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
ACAACAACC---------------A---CG---------CCATTTCC---AC---CACCTA---CAACAA-A---------AAACTTTCAAGGTATTTTCAAT-AGCC-CCGCGAT------------------------AGCGCCCTGAA---------ACGCCGTCTGAC-----------------------CTATAGTTTTTTTATCAGTAGCCATTCACCGCAATTGCAACTCAGTCATCTGCTGGCTTT-ATA------GTTATT--------------TGAAT---AGTTT----------------------------------------------------------------------------------------------------------------TTAAGCTCTTCTAGACGC----AAACCGCGCGT-AGCTTTGAAATTGGTTTA-------CCACTTTATGCAAAA---AAAACAGTTACACTCAACA-----------ATTTTGATTAGGAAGTTGTTG----------TATCTGTACAGTTACSizeHit CountTotal NormTotal
No Reads
droBia1
ACAACAACT---------------A---CATCCACGACACCATTTCC---AT---CGACAA---CAACAACA---------AAACTAGCAAGGTATTTTCACT-AGCCATTGCG----------------------------CG----------------------TCTGAA-----------------------G------CTCACTGCCAGCCGCCACCTTAATCAATTTCAACTCAGTCATTAGCTGGCTTT-GAT------ATTATT--------------CGCAT---AGTTT----------------------------------------------------------------------------------------------------------------ATAAGCTCTCATTCTCGC----ATTCCACATGC-AGCTTTAAAATTTGGCTA-------CCACATTATACAGAA---CACCCAGTTACAC---------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ACCACAACT---------------A---CAACCACGACACCATTCCC---AT---CTACGA---CAACAACA---------AAACTAGCAAGGTATTTTCACT-AGCCATTGCGAT------------------------AGCGCCTTAGA---------ACAACGTAGGAA-----------------------GTAAAGTCTCACTGCCAGCGGCCATCCGAAGCAATTGCAACTCAGTCATTAGCTGGCTTT-ATT------ATTATT--------------TGCAT---AGTTT----------------------------------------------------------------------------------------------------------------GTAAGTTCTCATTCTCGC----ATAACACATGC-AGCTTGAAAGTTTGGCTA-------TCACATTATACAGAACATTAC--------ACACTCGC---------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
ACAACAACC---------------A---CG------ACATCACTTCCAC------CAACAACAACAACAAAA---------AAACAAGCAAGGTATTCTGACC-AGTCATTGCAAA------------------------AGCGCCCTGAA---------ACCACGTTTAAA-----------------------CTTAATTTTCTCTGGCAGTCGCTCTCTAACGCAAATACAACGCAGTTATTAGCTGGCTTT-ATT------ATTATT--------------TATAT---ACTTT----------------------------------------------------------------------------------------------------------------ATAAGCTCTCATTCTCGC----ATACCACGTGC-ATTTTGAAAATTTGGC-------------ATAATACAGAA---CACACAGTTACACTCGCCC-----------AGTATGGCTAGGTAGTTTTT----------------------TTATSizeHit CountTotal NormTotal
No Reads
droRho1
ACAC------------------------------------CATTTTC---AC---CAC------CAACAACA---------AAACTAGCAAGGTATTTTCACT-AGTCATTGCAGA------------------------AGCTCCCTGAA---------ACATCGTTTGAA-----------------------CTAAAGTCTCTCTGCCAGCCGCTCGC-----TAATTGCAACTCAGTTATTACATGGCTTT-ATT------ATTATT--------------TATAT---TCTTT-----------------------------------------------------------------------------------------------------ATTTATACATTGTAAGCTCTCATTTCTGC----A-------TCG-ATCTTGAAAATTTGGCA---------CACATTATACAGAA---CACACAGCTACACTCGCCA-----------AGTATAGTTAGACAGTTTTGTA-------ATCATGCTATCTGATATSizeHit CountTotal NormTotal
No Reads
droFic1
ACAACAAAAA---CTACAAGTACAA---CAACCACCACACCACCTCC---AC---CAACGA---CAACAGAA---------AAACCAGCAAGGTATTTTCACT-AGCCATTGCGAT------------------------AGCGCCCTAAA---------AGACTGTCTTAA-----------------------GTGAAGTCTCCCTGGCAGTCGCCCTCTAACGCAACTGCAACTCAGTCATTAGCTGGCTTC-ATT------ACTATT---------------GC-T---AGTCT----------------------------------------------------------------------------------------------------------------TTAAGCTCTCATTCCGTC----ATA-CAAGTGC-AGTTTGAAAAATTGGCTTTGAAAGATCACACTATACAGAA---CACACAACTACACCCGA---------------CATGTTTAGGCAGTTTTTTA-------A-CATGCTA-CTGATATSizeHit CountTotal NormTotal
No Reads
droKik1
ATAACAACT---------------A---CA------CCACA---GCC---CCCAACGACAACAACAACAACA---------AAAGTAGCAAGGTATTGTCACCAATTGATAGCGAA---ATG------------------AGCGCCAAGACACAGGTC-------------------------------------------TTTCTCTGCCAGTCGCCTTCTATCGCAATCGCCACTAAGTCATTAGCCGGCTTTCAGT------GTTATAGTTTAGTT------TATA------TTC----------------------------------------------------------------------------------------------------------------CTAAGCTCTCATTCC----------------GC-CGCTTGCGATTTTGGCAA---------ACATTATACAGAA-AACACACAGCTACACG--------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
ACTACAAGT---------------A---CA------ACCACACCACCACCAT---CAACGA---CAACCACA---------AAAAGGTATAGGTATTTTGGCAGACCCGTTGCCAA------------------------AA------------------A--------------------GAGAAATACATGCAGATAGCTGACTC---TAGGCGCCTT-------------------------------------------------------------------------AGTCTGTAAGATCGCAT-AGAACACACTGC--------CACAAAATACAGTACGTACTAAGGTCGGAGCCATAAGTAGTATGGCCATCCGACGAGTTGTGGACTTCA-----------------------TCCAT----CTATCTATTAT-AAGCCAGGACTTTCC------------------------A---ACCACAGTTACACCCGCTT----------------AGTTAGCTAG---------------------------TTCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
ACTACAAGT---------------A---CA------ACCACACCACCACCAT---CAACGA---CAACTCCA---------AAAAGGTATAGGTATTTTGAGAGACCCATTGCCAA------------------------AA------------------A--------------------GAGA-------------AATTCTCGCAGATAGCTGACCTTAGGCGC---------------------------------------------------------------CTTAGTTCGTAAGATCTCATTAGATCACACCAC--------CACAAAATAAAGTACATACTAAGGTCGGAGCCATATACATCATGGCCATCCGACAAGT-----------------------TCTGGACCTCATCCAT----CTATCTATTAC-AAGCCAGGACTTTCAA---------------------AAA---AACACAAATACACCCGCTT----------------AGTTAGATAG---------------------------TTCTSizeHit CountTotal NormTotal
No Reads
dp5
ACAACAACCAGCACAACAAAAACAACATCAACTACAACACCACCATC---AC---CAACGA---CAACAACAACAACAACGAAACCCCAAAGGTATTTCGAGAGTCACATTGCGTTAGCATT------------------AGCGCCTGCATTCAATTCATTCACCGTTTGAGAGCAACAAAGTCAAA--CTAGCAGACTCGTCTCTCCGTTTTTCGTCTCTCGGTTTT---------------------------CCCTTGTGCAGTTTTAGTTTGCTTTTAGGC-----CACAGTTT----------------------------------------------------------------------------------------------------------------GTAAGTTCTCATTCG-GCAATCATCTCACGCGAAAGCTTTTCAAATCGGCT---------CACATTATACACAG-ACTAC--------ACACTCTC-----------CGGAACGGTATG--------------------------TCATAGATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ACAACAACCAGCACAACAAAAACAACATCAACTACAACACCACCACC---ACCAACGACAA---CAACAACAACAACAACGAAACCCCAAAGGTATTTCGAGAGTCACATTGCGTTAGCATT------------------AGCGCCTGCATTCAATTCATTCACCGTTTGAGAGCAACAAAGTCAAA--CTAGCAGACTCGTCTCTCCGTTTTTCGTCTCTCGGTTTT---------------------------CCCTTGTGCAGTTTTAGTTTGCTTTTAGGC-----CACAGTTT----------------------------------------------------------------------------------------------------------------GTAAGTTCTCATTCG-GCAATCATCTCACGCGAAAGCTTTTCAAATCGGCT---------CACATTATACACAG-ACTAC--------ACACTCTC-----------CGGAACGGTATG--------------------------TCATAGATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AAAACAACA---------------A---CC------CCGACACCACCACCAC---CGACAT---CAACATCC---------AAATTATCAAGGTATTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
ACAACAAAA---------------A---CA------ACTACATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
AGAACAACA---------------A---CA------ACAACACCAGCAA------CAACTA---CAACTACAACTACATTGCAACCTTCAAGGTACTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ACAACAACA---------------C---CA------ACCACACTTCAAC------------------------------------CAACAAGGTACTTTCTAAGCCAAAAATTGGTAAATTCTGTACCACATATTTAGTACGCGTCATCTA---------GTTGCATTTTTA-----------------------CTATATTCTCT--GCGGGGCCC---------------------------------------------------------------------------------------------------AGACTGCCTTACTTTCG--CAATGATGTCTGCCTTACTTTCGCAAACGAAATATTTATGAGTGTGTCATTAGTTGTCAACTTTA-------------A---------ACTGC----AA------AAC-ACCATAAGATTTTCGA------------CATTACACAGAT---TAC--------ACATTTATACTGCGCTAAAGCTAATTGTTCTGAC---------------------------TGAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:24 PM