ID:

dsi_24506

Coordinate:

3r:10326628-10326777 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TAATCCATCAAATGCAAAGCCCAAAAGCGTTACGGTACATGTGCTCAATGGTAAGTAAAATCAACGACAACACACCCACACACAGCCACAGGATATCCACACAAAAAGTACAACAATGGGTCCTTGAAAAACAGTAGAGAACACACGAAATGAAACTGTGACAAAAAACGGAATTGCACAATGGGAATGCTAATGGGTTACACGACGAGTTTTGGCCTGGAAGACAACAAAAAATAATGGGTTGAATGGG ************************************************.......................(((((..((...(((((((..(((((.................))))).)))).............................((((........))))..........)))...))....)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries
.....................................CATGTGCTCAATGGT......................................................................................................................................................................................................	15	0	1	1.00	1	1	0	0
..........................GCGTTATGGGACATGTGCT.............................................................................................................................................................................................................	19	2	1	1.00	1	0	1	0
..................................................................................................................................................................................................................TTTGGCGTGGAAGAC.........................	15	1	10	0.10	1	0	0	1

Anti-sense strand reads

ATTAGGTAGTTTACGTTTCGGGTTTTCGCAATGCCATGTACACGAGTTACCATTCATTTTAGTTGCTGTTGTGTGGGTGTGTGTCGGTGTCCTATAGGTGTGTTTTTCATGTTGTTACCCAGGAACTTTTTGTCATCTCTTGTGTGCTTTACTTTGACACTGTTTTTTGCCTTAACGTGTTACCCTTACGATTACCCAATGTGCTGCTCAAAACCGGACCTTCTGTTGTTTTTTATTACCCAACTTACCC ************************************************.......................(((((..((...(((((((..(((((.................))))).)))).............................((((........))))..........)))...))....)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR553487 NRT_0-2 hours eggs	GSM343915 embryo	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
..............GTTTCGGGTTTTTGGAATGCCAG.....................................................................................................................................................................................................................	23	3	1	1.00	1	1	0	0	0	0
...............................................................................................................................................................................................TTGCCCAATGTGCTG............................................	15	1	2	0.50	1	0	1	0	0	0
......TAGTTTCCGGTTCGGGTATTC...............................................................................................................................................................................................................................	21	3	5	0.20	1	0	0	1	0	0
.............CGTTTCGGGTTTTCTAAAGG.........................................................................................................................................................................................................................	20	3	16	0.19	3	3	0	0	0	0
.............................................................................CGTGTGTCGGTGTCC..............................................................................................................................................................	15	1	20	0.10	2	0	0	0	0	2
................................................................GCTGATGTGTGGGTCTG.........................................................................................................................................................................	17	2	14	0.07	1	0	0	0	1	0
...................................................................GTAGTGTGGGTGTCTGTTGGT..................................................................................................................................................................	21	3	15	0.07	1	0	0	0	1	0
.....................................................................................................................................................................................................................CAGGATCTTCGGTTGTTTT..................	19	3	20	0.05	1	1	0	0	0	0
...........................................................................................................................................................................................................CTCCTCAATACCGGAC...............................	16	2	20	0.05	1	0	1	0	0	0

Generated: 04/24/2015 at 10:41 AM