dsi_24478

exon [3l_20395291_20395388_+]; three_prime_UTR [3l_20395291_20395388_+]; intron [3l_20394951_20395290_+]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GCAGTTTGTTTTGGGGATTTAAATGCTTGTTTATTAAGTTGTTCAGTTTTCCATTTAAATTTAATATCATTTTAGAATCTGATATGATTTTTTTGTTCAACATTCGAATTATTTAGTCATGCTGGTTTACCGTGTTCCGTTTAATTATCAGTTACGCTTTACTTTAAACTAAGTTAAAATTTAAAAATCTACTCTGCCAGCGATAATCATCCGGTTTCAGTTCGGTTTCAAGATCAGCGCTTTTAAATCT ************************************************...(((((((((..(((((..........)))))(((((.....((((.......)))).....))))).(((((((((..(((...(((.............)))...)))..)))))).)))..)))))))))...............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR902008 ovaries	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	GSM343915 embryo	M053 female body	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M023 head	SRR553485 Chicharo_3 day-old ovaries
..........................................................................................................................AGGTTTACCGTGTTCAGGTTA...........................................................................................................	21	3	3	4.00	12	12	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TAAAAATCTACTCTGCCAGCGACAATCAT........................................	29	1	1	2.00	2	0	0	2	0	0	0	0	0	0	0
...........................................................................................................................GGTTTACCGTGTTCAGGTTA...........................................................................................................	20	2	2	2.00	4	4	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TCTACTCTGCCAGCGACAATCATCCGGT...................................	28	1	1	2.00	2	1	1	0	0	0	0	0	0	0	0
.............................TTTATTAAGTTGTTCAGTTTTCCATT...................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TTTAAAAATCTACTCTGCCAGCGACA.............................................	26	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................AATCTACTCTGCCAGCGACAATCA.........................................	24	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TAAAATTTAAAAATCTACTCTGCCAGCGA...............................................	29	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.............................................................TAAGATCATTTTAAAATCTGATT......................................................................................................................................................................	23	3	2	0.50	1	0	0	0	0	0	1	0	0	0	0
.............................................................TAAGATCATTTTGGAAGCTGATA......................................................................................................................................................................	23	3	3	0.33	1	0	0	0	0	0	0	0	1	0	0
..................................................................................................................................................................................................................CCGGTCTCAGTTCGG.........................	15	1	7	0.29	2	0	0	0	1	0	0	1	0	0	0
............................................................................................................................GTTTACCGGGTTCCGTTG............................................................................................................	18	2	4	0.25	1	0	0	0	0	0	0	1	0	0	0
.............................................................TAAGATCATTTTGGAATCTGATT......................................................................................................................................................................	23	3	4	0.25	1	0	0	0	0	1	0	0	0	0	0
.............................................................TAAGATCATTTTGGAATCTGCT.......................................................................................................................................................................	22	3	4	0.25	1	0	0	0	0	1	0	0	0	0	0
.............................................................TGATATCATTTTTCAATCTGAT.......................................................................................................................................................................	22	3	5	0.20	1	0	0	0	0	1	0	0	0	0	0
.............................................................TAATGTCATTTTAAAATGTGAT.......................................................................................................................................................................	22	3	6	0.17	1	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................AGCCGGTCTCAGTTCGGATT......................	20	3	6	0.17	1	0	0	0	1	0	0	0	0	0	0
.......................................TGTTCAGTTGTCCATTCGAATTT............................................................................................................................................................................................	23	3	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.............................................................TAATATCATTTTGCAAGCTGAT.......................................................................................................................................................................	22	3	6	0.17	1	0	0	0	0	1	0	0	0	0	0
.............................................................................................TGTTCGACATTCGAATT............................................................................................................................................	17	1	6	0.17	1	1	0	0	0	0	0	0	0	0	0
.......GTTTTGGGGATTTACATGGA...............................................................................................................................................................................................................................	20	3	7	0.14	1	0	0	0	0	1	0	0	0	0	0
..AGTTTGTTTTGGGGACCT......................................................................................................................................................................................................................................	18	2	7	0.14	1	0	0	0	0	0	0	0	0	1	0
.......................................................TAAATTTAATAGCACTTTCGA..............................................................................................................................................................................	21	3	9	0.11	1	0	0	0	1	0	0	0	0	0	0
.........................................................................................TTTTTGTTGAACTTTGGAATTATT.........................................................................................................................................	24	3	13	0.08	1	0	0	0	0	0	0	0	0	0	1
GCAGTGTGATGTGGGGATTT......................................................................................................................................................................................................................................	20	3	14	0.07	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................AACATTCAAATTATGTAGGCA...................................................................................................................................	21	3	14	0.07	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................CGGTTTCAGTTCGGA........................	15	1	15	0.07	1	0	0	0	1	0	0	0	0	0	0
GCAGTGAGTTGTGGGGATTT......................................................................................................................................................................................................................................	20	3	16	0.06	1	0	0	1	0	0	0	0	0	0	0

CGTCAAACAAAACCCCTAAATTTACGAACAAATAATTCAACAAGTCAAAAGGTAAATTTAAATTATAGTAAAATCTTAGACTATACTAAAAAAACAAGTTGTAAGCTTAATAAATCAGTACGACCAAATGGCACAAGGCAAATTAATAGTCAATGCGAAATGAAATTTGATTCAATTTTAAATTTTTAGATGAGACGGTCGCTATTAGTAGGCCAAAGTCAAGCCAAAGTTCTAGTCGCGAAAATTTAGA ************************************************...(((((((((..(((((..........)))))(((((.....((((.......)))).....))))).(((((((((..(((...(((.............)))...)))..)))))).)))..)))))))))...............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	M025 embryo
...........................................................................................................................CCAAATGGCACAAGTCCAATT..........................................................................................................	21	2	1	2.00	2	0	2	0	0	0	0	0
.....................................................................................................................................................................................................GTCGCTATACTTAGGCCAAAGT...............................	22	3	1	2.00	2	0	0	2	0	0	0	0
....................................TCAACAAGTCAAAAGGTAAATT................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0
....................................TCAACAAGTCAAAAGGTAAATTT...............................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0
........................................CAAGTCAAAAGGTAAATTT...............................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................TCGCTATACTTAGGCCAAAGT...............................	21	3	2	0.50	1	0	0	1	0	0	0	0
..........................................................................................................................TCCAAATGGCACAAGTCCAATT..........................................................................................................	22	3	2	0.50	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................................ATTCGTAGGCCAAAGTC..............................	17	1	2	0.50	1	0	0	0	1	0	0	0
............................................................................................................................................................................................................TTCGTAGGCCAAAGTC..............................	16	1	2	0.50	1	0	0	0	1	0	0	0
.............................................................................................................................................................................................................TCGTAGGCCAAAGTC..............................	15	1	8	0.38	3	0	0	0	2	1	0	0
......................................................................................................................................................................TTGTTTCAAATTTAAAGTTTTAG.............................................................	23	3	3	0.33	1	0	0	0	0	1	0	0
.............................................................................................ACAAGCTGTAAGCTTA.............................................................................................................................................	16	1	8	0.25	2	0	0	0	0	0	2	0
.........................................................................................................................GACCAAGTCGCACAAGGCAG.............................................................................................................	20	3	6	0.17	1	1	0	0	0	0	0	0
...................................................................................................................................................................................AAATTTTTTGATGAGAAGGTG..................................................	21	3	6	0.17	1	0	1	0	0	0	0	0
.....................................................................AAAATCTTAGACTATGCTCT.................................................................................................................................................................	20	3	15	0.07	1	0	0	0	1	0	0	0
................................................................................................................................................................................................................TCGGCCAGAGTCAAGCCTA.......................	19	3	18	0.06	1	0	0	0	0	0	0	1
............................................................................................................................................................................................................TTTGTAGGCCAAAGTCC.............................	17	2	19	0.05	1	0	0	0	1	0	0	0
................................................................................................................................................................................................................................CAAAGTGCTAGTCCCG..........	16	2	20	0.05	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................ATTCGTACGCCAAAGTC..............................	17	2	20	0.05	1	0	0	0	0	0	1	0
..............................................................................................CAAGCTGTAAGCTTA.............................................................................................................................................	15	1	20	0.05	1	0	0	0	0	0	1	0

Species	Coordinate	ID	Alignment
droSim2	3l:20395091-20395340 +	dsi_24478	GCAGTTTGT---TTTGGGGATTTAAATGCTTGTTTATTAAGT---------TGT-TCA------------------GTT-TTCCATTTAAA-TTTAATATCATTTTAGAATCTGATATG-ATTTT-----------TTTG------------------TTCAACATTC-GAAT-T--AT-TTAG-TCATGC-TGGTTTACCGTGTTCCGT------------------------------------------TTAAT-----------------------------TATCAGTT-A-CGCTTTAC-TTTAAACTAAGT-----TAAAATTT-AAAAATCTACT-CT------------------------------------------------GCCAGCGATA------ATCATCC-GGTTTCAG-TTCGGTTTCA--AGATCAGCGC-----------------------TTTTA-AATCT-
droSec2	scaffold_11:732460-732708 +		GCAGTTTGT---TTTGGGGAATTAAATGCTTGTTTATTAAGT---------TGT-TCA------------------GTT-TTCCATTTAAA-TTTAATATCATTTTAGAATCTGATATG-ATTTT-----------TT-G------------------TTCAACATTC-GAAT-T--AT-TTAG-TCATGC-TGGTTTACCGTGTTCCGT------------------------------------------TTAAT-----------------------------TATCAGTT-A-CGCTTTAC-TTTAAACTAAGT-----TAAAATTT-AAAAATCTACT-CT------------------------------------------------GCCAGCGATA------ATCATCC-GGTTTCAG-TTCGGTTTCA--AGATCAGCGC-----------------------TTTTA-AATCT-
dm3	chr3L:20836827-20837076 +		GCAGTTTGT---TTTGGGGATTTAAATGCTTGTTTATTAAGT---------TGT-TCA------------------GTT-TTCCATTTAAA-TTTAATATCATTTTAGAATCTGATATG-ATTTT-----------TTTG------------------TTCAACATTC-GAAT-T--AT-TTAG-TCATGC-TGGTTTACCGTGTTCCGT------------------------------------------TTAAT-----------------------------TATCAGTT-A-CGCTTTAC-TTTAAACTAATT-----TAAAATTT-AAAAATCTACT-CT------------------------------------------------GCCAGCGATA------ATCATCC-GGTTTCAG-TTCGGTTTCA--AGATCAGCGC-----------------------CGTTA-AATCT-
droEre2	scaffold_4784:20524158-20524400 +		GCTGTTTGT---TTTGGGGATTTAAATGCTTGTTTATTAAGT---------TGT-TCA------------------GTT-TTCCATTTAAT-TTTAATATCATTTTAGAATCTGATATG-ATTTT-----------TTTG------------------TTCAACATTC-GAAT-T--AT-TTAG-TCATGC-TGGTTTACCGTGTTCCGT------------------------------------------TTAAT------------------------------------T-A-CGCTTTAC-TTTAAACTAATT-----TAAAATTT-AAAAATCTACT-CT------------------------------------------------GCCAGCGATA------ATCATCC-GGTTTCAG-TTCGGTTTCA--AGATCAGCGC-----------------------TTTTA-AATCT-
droYak3	3L:19702791-19703033 -		GCAGTTTGT---TTTGGGGATTTAAATGCTTGTTTATTAAGT---------TGT-TCA------------------GTT-TTCCATTTAAA-TTTAATATCATTTTAGAATCTGATATG-ATTTT-----------TTTG------------------TTCAACATTC-GAAT-T--AT-TTAG-TCATGC-TGGTTTACCGTGTTCCGA------------------------------------------TTAA------------------------------------TT-A-GGCTTTAC-TTTAAACTAATT-----TAAAAGTT-AAAAATCTACT-CT------------------------------------------------GCCAGCGATA------ATCATCC-GGATTCAG-TTCGGTTTGA--AGATCAGCGC-----------------------TTTTA-AATCT-
droEug1	scf7180000409711:5161025-5161279 -		GCAGTTTGT--TTTTGGGGATTTAAATGCTTGTTTATTAAGT---------TGT-TCA------------------GTTTTTCCATTTAAT-TTTAATATCATTTTAGAATCTGATATG-ATTTT-----------TTTT-----------------TTGCAACATTC-GAAT-T--AT-TTAG-TCATGC-TGGTTTACCGTGTTCCATT----------------------------------------TTTAAT-----------------------------TATCAGTT-A-CGTTTTAC-TTTAAACTAATT-----TAAAATTT-AAAAATCTACT-CT------------------------------------------------GCTGGCGATA------ATCATCC-GGTTTCAG-TTCGGTTTCA--AGATCAGCGC-----------------------TCTTT-AATCT-
droBia1	scf7180000302193:5211919-5212168 -		GCAGTTTGT---TTTGGGGATTTAAATGCTTGTTTATTAAGT---------TGTTTCA------------------GTT-TTCCATTTAAT-TTTAATATCATTTTAGAATCTGATATG-ATTTT-----------TT--------------------TTCAACATTC-GAAT-T--AT-TTAG-TCATGC-TGGTTTACCATGTTCCGA-----------------------------------------TTTAAT-----------------------------TATCAGTT-A-CGTTTTTC-TTTAAACTAATT-----TAAAATTT-AAAAATCTACT-CT------------------------------------------------GCTGGCGACA------ATCATCC-GGTTTCAG-TTCGGTTTCA--AGATCAGCGC-----------------------TCTTT-AATCT-
droTak1	scf7180000415664:77496-77747 -		GCAGTTTGT---TTTGGGGATTTAAATGCTTGTTTATTAAGT---------TGT-TCA------------------GTTTTTCCATTTAAT-TTTAATATCATTTCAGAATCTGATATG-ATTTT-----------TT-------------------TTGCAACATTC-GAAT-T--AT-TTAG-TCATGC-TGGTTTACCGTGTTCCGCT----------------------------------------TTTAAT-----------------------------TATCAGTT-A-CGTTTTTC-TTTAAACTAATT-----TAAAATTT-AAAAATCTACT-CT------------------------------------------------GCTGGCGACA------ATCATCC-GGTTTCAG-TTCGGTTTCA--AGATCGGCGC-----------------------TCTTT-AATCT-
droEle1	scf7180000491193:2540944-2541193 -		GCAGTTTGT--TTTTGGGGATTTAAATGCTCGTTTATTAAGT---------TGT-TCA------------------GTTTTTCCATTTAAT-TTTAATATCATTTTAGAATCTGATATG-ATTTT-----------TT--------------------TTCAACATTC-GAAT-T--AT-TTAG-TCATGC-TGGTTTACCGTGTTCAGT-----------------------------------------TTTAAT-----------------------------TATCAGTT-A-TGTTTTAG-TTTAAACTAATT-----TAAAATTT-AAAAATCTACT-CT------------------------------------------------GCTGGCGATA------ATCATCC-GGTTTCAG-TTCGGTTTCA--AGATCAGCGC-----------------------TTTT--AATCT-
droRho1	scf7180000779741:111628-111877 +		GCAGTTTGT----TTGGGGATTTAAATGCTTGTTTATTAAGT---------TGT-TCA------------------GTTTTTCCATTTAAT-TTTAATATCATTTTAGAATCTGATATG-ATTTT-----------TT-------------------TTTCAACATTC-GAAT-T--AT-TTAG-TCATGC-TGGTTTACCGTGTTCAGT-----------------------------------------TTTAAT-----------------------------TATCAAGT-A-CGTTTTAC-TTTAAACTAATT-----TAAAATTT-AAAAATCTACT-CT------------------------------------------------GCTGGCGATA------ATCATCC-GGTTTCAG-TTCGGTTTCA--CAATCAGCGC-----------------------TTTTT-AATCT-
droFic1	scf7180000453819:90957-91206 +		GCAGTTTGT---TTTGGGGATTTAAATGCTTGTTTATTAAGT---------TGT-TCA------------------GTTTTTCAATTTAAT-TTTAATATCATTTTAGAATCTGATATG-ATTTT-----------TT-------------------TTTCAACACTC-GAAT-T--AT-TTAG-TCATGC-TGGTTTACCGTGTTCCAT-----------------------------------------TTTAAT-----------------------------TATCAGTT-A-GGT-TTAA-TTTAAACTAATT-----TAAAATTT-AAAAATCTACT-CT------------------------------------------------GCTGGCGATA------ATCATCC-GGTTTCAG-TTCGGTTTCA--AGATCAGCGC-----------------------TTTTT-AATCT-
droKik1	scf7180000302697:512636-512895 +		GCAGTTTGTGGTTTTGGGGATTTAAATGCTCGTTTATTAAGT---------TGT-TCA------------------GTT-TTCCATTTAAT-TTTAATATCATTTTAGAATCTGATATG-ATTTT-----------TTTC-----------------TTTCAACATTC-GAAT-T--AT-TTAG-TCATGC-TGGTTTACCATGTTCCGTGT---------------------------------------TTTATT-----------------------------TATCAGTT-A-CGTTTCGC-TTTAAACTAATT-----TAAAATTT-AAAAATCTACT-CT------------------------------------------------GCAGGCGATACACATCATCATCC-GGTTTCAG-TTCGGTTTTA--AGATC---GC-----------------------TCATT-AAACT-
droAna3	scaffold_13337:8846495-8846793 -		GCAGTTGGT---TTTGGGGATTTGAATGCTCGTTTATTAAGT---------TTT-TCA------------------GTTTTTCCATTTAAT-TTTAATATCATTTTAGAATCTGATATG-ATTTT-----------T--GTTTT--GTT--TTCTTTTAGCAACATTC-GAAT-T--AT-TTAT-TCATGC-TAGTTTACCGTGTTCCGTTTTTGGGGTTTTTTTTTTC-------------------------TTT-----------------------TTTCATTACTATTA-G-GGTTTCAT-ATTAAACTAATT--GTTTAAAATTT-AAAAATCTACT-CT---------------------------------------------------TGCGATA------CTCATCT-GGTTTCAG-TTCGGCCTTA--AGATCAGAGC-----------GCACTCGCTCGCTTTAATAATCT-
droBip1	scf7180000396541:988309-988609 -		GCAGTTGGT---TTTGGGGATTTGAATGCTCGTTTATTAAGT---------TTT-TCA------------------GTTTTTCCATTTAAT-TTTAATATCATTTTAGAATCTGATATGTATTTT-----------TTTGTTTTTTTTTTTTTTTTTTGCCAACATTC-GAAT-T--AT-TTAT-TCATGC-TAGTTTACCGTGTTCCGTTTTTGGGGGTTTT----------------------------TTTCAT-----------------------------TACTATTATAGGGTTTTGT-ATTAAACTAATT-----TAAAATTT-AAAAATCTACT-CT---------------------------------------------------TGCGATA------CTCATCC-GGTTTCAG-TTCGGTTTTA--AGATCAGAGCA--TAACGCACT----CGCTCGCTTTAATAATCT-
dp5	XR_group6:1306150-1306401 -		GCAGTT-GT---TTGGGGGATTTAAATGCTTGTTTATTAAGT---------TGT-TCA------------------GTT-TTTGATTTAAT-TTTAATATCATTTTAGAATCTGATATG-ATTTC-----------TTTT-----------------TTGCAACATTT-GAAT-T-----TTAG-TCATGC-TGGTTTATCGTGTTCCGTG-----------------------------------------T---T-----------------------------TATCCGTT-A-AGTTTTAGATTTAAACTAATT-----TAAAATTT-AAAATTCTAATTC------------------------------------------------------------------TCATCC-A--TCCATATTTGGATTCA--AGATCAGCACAAATATCGATCG----CGTTCGC---TA-AGTCTA
droPer2	scaffold_12:1995428-1995679 -		GCAGTT-GT---TTGGGGGATTTAAATGCTTGTTTATTAAAT---------TGT-TCA------------------GTT-TTTGATTTAAT-TTTAATATCATTTTAGAATCTGATATG-ATTTC-----------TTTT-----------------TTGCAACATTT-GAAT-T-----TTAG-TCATGC-TGGTTTATCGTGTTCCGTG-----------------------------------------T---T-----------------------------TATCCGTT-A-ATTTTTAGATTTAAACTAATT-----TAAAATTT-AAAATTCTAATTC------------------------------------------------------------------TCATCC-A--TCCATATTTGGATTCA--AGATCAGCACAAATATCGATCG----CGTTCGC---TA-AGTCTA
droWil2	scf2_1100000004762:5612119-5612257 -		GTTCTTTCT------TTGGATTTAAATGTTCATTTATTGAATTAAGTTTTTTGT-TCA------------------GTT----CATTTAAT-GTGTTTATCATTTTAGAATCTGATATG-ATTTT---------------------------------TGCAACATTTTGGAATT--TTATTAG-CCATTTATGGTTTATCGCTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_13049:1762205-1762530 +		TTTGAT-------T--TGAATTTAAGTGTTCATTTATTGAGT---------T-T-AC-------------------GTTTTTCCCTTTAAT-GTTAATATCATTTTAGAATCTGATATG-ATTTTCGGTTTTTTTTT--GTTTTTTTTT--TTTTTTTTACAACATTT-CAAT-T------TA-----------GTTTA-CGTTTTCTGT------------------------------------------TTATTTACGGGTTTAATTTTGTTTTGGTTTTT--TTT----T----AATTTTC-TTTAAATTTTTTTTGT-TTAATTTT-AAAAATCTAAG-CTTATGTGGTCTTTGCAATTGTTGACGCTCTTCCGGGCCTCTGGCTTTTCGCCAGCA-----------CATCTTTGCCTCAG-TCCATTTAAATGAGATCGGCGC-----------------------ACATA-TATAT-
droMoj3	scaffold_6654:2068543-2068731 -		G-----------------AATTTAAATGTTCATTTATTGAGT---------T---TAC------------------GTT-TTCCATTTAAT-GTTAATATCATTTTAGAATCTGATATG-ATTTT-----------G--CTTTT---TT--TTTTCTTTACAACATTT-GAAA-TTTGT-TTAG-CTGTTT-GGGTTTAT---GTTT---------------------------------------------TTATT-----------------------TGTT--ATTTAGTT-A-TGTTTTT-------ACGTT-TTTATTGAATTTTTAAAAAATTTACT-TT------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15110:2834421-2834657 +		G-----------------AATTTAAATGTTCATTTATTGAGT---------TTT-TTTTTGTTTTTTGTCTTCTGCGTT-TTGCATTTAATGTTTAATATCATTTTAGAATCTGATATG-ATTTT-----------T--GTTTTTTGTT--TTATTTTTACAACATTTTGAA-----AT-TTAGCTTATGT-TGGTTTACG-TTTTTTTT----------------TTGTTTATTATGTGTGTTCTTGTATTTTAAT-----------------------------TT-----T-A-AGTTTAATATTTAAACTAGTT-TG--TTAATTTT-AAAAATCTA------------------------------------------------------------------------------------------------------------------------------------------ACCT-

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GCAGTTTGT---TTTGGGGATTTAAATGCTTGTTTATTAAGT---------TGT-TCA------------------GTT-TTCCATTTAAA-TTTAATATCATTTTAGAATCTGATATG-ATTTT-----------TTTG------------------TTCAACATTC-GAAT-T--AT-TTAG-TCATGC-TGGTTTACCGTGTTCCGT------------------------------------------TTAAT-----------------------------TATCAGTT-A-CGCTTTAC-TTTAAACTAAGT-----TAAAATTT-AAAAATCTACT-CT------------------------------------------------GCCAGCGATA------ATCATCC-GGTTTCAG-TTCGGTTTCA--AGATCAGCGC-----------------------TTTTA-AATCT-	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
................................TTTATTAAGT---------TGT-TCA------------------GTT-TTCCATT.............................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TAAAATTT-AAAAATCTACT-CT------------------------------------------------GCCAGCGA..................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................C-GGTTTCAG-TTCGGA...................................................	15	15	0.07	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0

droSec2

GCAGTTTGT---TTTGGGGAATTAAATGCTTGTTTATTAAGT---------TGT-TCA------------------GTT-TTCCATTTAAA-TTTAATATCATTTTAGAATCTGATATG-ATTTT-----------TT-G------------------TTCAACATTC-GAAT-T--AT-TTAG-TCATGC-TGGTTTACCGTGTTCCGT------------------------------------------TTAAT-----------------------------TATCAGTT-A-CGCTTTAC-TTTAAACTAAGT-----TAAAATTT-AAAAATCTACT-CT------------------------------------------------GCCAGCGATA------ATCATCC-GGTTTCAG-TTCGGTTTCA--AGATCAGCGC-----------------------TTTTA-AATCT-	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

GCAGTTTGT---TTTGGGGATTTAAATGCTTGTTTATTAAGT---------TGT-TCA------------------GTT-TTCCATTTAAA-TTTAATATCATTTTAGAATCTGATATG-ATTTT-----------TTTG------------------TTCAACATTC-GAAT-T--AT-TTAG-TCATGC-TGGTTTACCGTGTTCCGT------------------------------------------TTAAT-----------------------------TATCAGTT-A-CGCTTTAC-TTTAAACTAATT-----TAAAATTT-AAAAATCTACT-CT------------------------------------------------GCCAGCGATA------ATCATCC-GGTTTCAG-TTCGGTTTCA--AGATCAGCGC-----------------------CGTTA-AATCT-	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAG-TTCGGTTTCA--AGATCAGCGC-----------------------CGT.........	28	1	24.00	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AG-TTCGGTTTCA--AGATCAGCGC-----------------------CGTT........	26	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	6	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGTTTCA--AGATCAGCGC-----------------------CGTT........	24	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................TTTACCGTGTTCCGT------------------------------------------TTAAT-----------------------------TATCAGT...............................................................................................................................................................................................	27	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAG-TTCGGTTTCA--AGATCAGCGC-----------------------C...........	26	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................TCAG-TTCGGTTTCA--AGATCAGCGC-----------------------CGTT........	28	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0
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..........................................................................................................................................TG------------------TTCAACATTC-GAAT-T--AT-TTAG-TCA........................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................T-TCA------------------GTT-TTCCATTTAAA-TTTAATA.................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................AATTT-AAAAATCTACT-CT------------------------------------------------GCCAGCG...................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................GAAT-T--AT-TTAG-TCATGC-TGGTTT..............................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TTTGT---TTTGGGGATTTAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GCTGTTTGT---TTTGGGGATTTAAATGCTTGTTTATTAAGT---------TGT-TCA------------------GTT-TTCCATTTAAT-TTTAATATCATTTTAGAATCTGATATG-ATTTT-----------TTTG------------------TTCAACATTC-GAAT-T--AT-TTAG-TCATGC-TGGTTTACCGTGTTCCGT------------------------------------------TTAAT------------------------------------T-A-CGCTTTAC-TTTAAACTAATT-----TAAAATTT-AAAAATCTACT-CT------------------------------------------------GCCAGCGATA------ATCATCC-GGTTTCAG-TTCGGTTTCA--AGATCAGCGC-----------------------TTTTA-AATCT-	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAG-TTCGGTTTCA--AGAT.........................................	19	1	4.00	4	0	0	0	0	0	0	4
..............................................................................................................................................................................T--AT-TTAG-TCATGC-TGGTTTACCGTGT.......................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................CATGC-TGGTTTACCGTGTTCCGT------------------------------------------T.......................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAG-TTCGGTTTCA--AGATC........................................	21	1	1.00	1	0	0	0	0	0	1	0

droYak3

GCAGTTTGT---TTTGGGGATTTAAATGCTTGTTTATTAAGT---------TGT-TCA------------------GTT-TTCCATTTAAA-TTTAATATCATTTTAGAATCTGATATG-ATTTT-----------TTTG------------------TTCAACATTC-GAAT-T--AT-TTAG-TCATGC-TGGTTTACCGTGTTCCGA------------------------------------------TTAA------------------------------------TT-A-GGCTTTAC-TTTAAACTAATT-----TAAAAGTT-AAAAATCTACT-CT------------------------------------------------GCCAGCGATA------ATCATCC-GGATTCAG-TTCGGTTTGA--AGATCAGCGC-----------------------TTTTA-AATCT-

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEug1

GCAGTTTGT--TTTTGGGGATTTAAATGCTTGTTTATTAAGT---------TGT-TCA------------------GTTTTTCCATTTAAT-TTTAATATCATTTTAGAATCTGATATG-ATTTT-----------TTTT-----------------TTGCAACATTC-GAAT-T--AT-TTAG-TCATGC-TGGTTTACCGTGTTCCATT----------------------------------------TTTAAT-----------------------------TATCAGTT-A-CGTTTTAC-TTTAAACTAATT-----TAAAATTT-AAAAATCTACT-CT------------------------------------------------GCTGGCGATA------ATCATCC-GGTTTCAG-TTCGGTTTCA--AGATCAGCGC-----------------------TCTTT-AATCT-	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCAGTTTGT---TTTGGGGATTTAAATGCTTGTTTATTAAGT---------TGTTTCA------------------GTT-TTCCATTTAAT-TTTAATATCATTTTAGAATCTGATATG-ATTTT-----------TT--------------------TTCAACATTC-GAAT-T--AT-TTAG-TCATGC-TGGTTTACCATGTTCCGA-----------------------------------------TTTAAT-----------------------------TATCAGTT-A-CGTTTTTC-TTTAAACTAATT-----TAAAATTT-AAAAATCTACT-CT------------------------------------------------GCTGGCGACA------ATCATCC-GGTTTCAG-TTCGGTTTCA--AGATCAGCGC-----------------------TCTTT-AATCT-	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCAGTTTGT---TTTGGGGATTTAAATGCTTGTTTATTAAGT---------TGT-TCA------------------GTTTTTCCATTTAAT-TTTAATATCATTTCAGAATCTGATATG-ATTTT-----------TT-------------------TTGCAACATTC-GAAT-T--AT-TTAG-TCATGC-TGGTTTACCGTGTTCCGCT----------------------------------------TTTAAT-----------------------------TATCAGTT-A-CGTTTTTC-TTTAAACTAATT-----TAAAATTT-AAAAATCTACT-CT------------------------------------------------GCTGGCGACA------ATCATCC-GGTTTCAG-TTCGGTTTCA--AGATCGGCGC-----------------------TCTTT-AATCT-	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCAGTTTGT--TTTTGGGGATTTAAATGCTCGTTTATTAAGT---------TGT-TCA------------------GTTTTTCCATTTAAT-TTTAATATCATTTTAGAATCTGATATG-ATTTT-----------TT--------------------TTCAACATTC-GAAT-T--AT-TTAG-TCATGC-TGGTTTACCGTGTTCAGT-----------------------------------------TTTAAT-----------------------------TATCAGTT-A-TGTTTTAG-TTTAAACTAATT-----TAAAATTT-AAAAATCTACT-CT------------------------------------------------GCTGGCGATA------ATCATCC-GGTTTCAG-TTCGGTTTCA--AGATCAGCGC-----------------------TTTT--AATCT-	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCAGTTTGT----TTGGGGATTTAAATGCTTGTTTATTAAGT---------TGT-TCA------------------GTTTTTCCATTTAAT-TTTAATATCATTTTAGAATCTGATATG-ATTTT-----------TT-------------------TTTCAACATTC-GAAT-T--AT-TTAG-TCATGC-TGGTTTACCGTGTTCAGT-----------------------------------------TTTAAT-----------------------------TATCAAGT-A-CGTTTTAC-TTTAAACTAATT-----TAAAATTT-AAAAATCTACT-CT------------------------------------------------GCTGGCGATA------ATCATCC-GGTTTCAG-TTCGGTTTCA--CAATCAGCGC-----------------------TTTTT-AATCT-	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCAGTTTGT---TTTGGGGATTTAAATGCTTGTTTATTAAGT---------TGT-TCA------------------GTTTTTCAATTTAAT-TTTAATATCATTTTAGAATCTGATATG-ATTTT-----------TT-------------------TTTCAACACTC-GAAT-T--AT-TTAG-TCATGC-TGGTTTACCGTGTTCCAT-----------------------------------------TTTAAT-----------------------------TATCAGTT-A-GGT-TTAA-TTTAAACTAATT-----TAAAATTT-AAAAATCTACT-CT------------------------------------------------GCTGGCGATA------ATCATCC-GGTTTCAG-TTCGGTTTCA--AGATCAGCGC-----------------------TTTTT-AATCT-	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCAGTTTGTGGTTTTGGGGATTTAAATGCTCGTTTATTAAGT---------TGT-TCA------------------GTT-TTCCATTTAAT-TTTAATATCATTTTAGAATCTGATATG-ATTTT-----------TTTC-----------------TTTCAACATTC-GAAT-T--AT-TTAG-TCATGC-TGGTTTACCATGTTCCGTGT---------------------------------------TTTATT-----------------------------TATCAGTT-A-CGTTTCGC-TTTAAACTAATT-----TAAAATTT-AAAAATCTACT-CT------------------------------------------------GCAGGCGATACACATCATCATCC-GGTTTCAG-TTCGGTTTTA--AGATC---GC-----------------------TCATT-AAACT-	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GCAGTTGGT---TTTGGGGATTTGAATGCTCGTTTATTAAGT---------TTT-TCA------------------GTTTTTCCATTTAAT-TTTAATATCATTTTAGAATCTGATATG-ATTTT-----------T--GTTTT--GTT--TTCTTTTAGCAACATTC-GAAT-T--AT-TTAT-TCATGC-TAGTTTACCGTGTTCCGTTTTTGGGGTTTTTTTTTTC-------------------------TTT-----------------------TTTCATTACTATTA-G-GGTTTCAT-ATTAAACTAATT--GTTTAAAATTT-AAAAATCTACT-CT---------------------------------------------------TGCGATA------CTCATCT-GGTTTCAG-TTCGGCCTTA--AGATCAGAGC-----------GCACTCGCTCGCTTTAATAATCT-	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

GCAGTTGGT---TTTGGGGATTTGAATGCTCGTTTATTAAGT---------TTT-TCA------------------GTTTTTCCATTTAAT-TTTAATATCATTTTAGAATCTGATATGTATTTT-----------TTTGTTTTTTTTTTTTTTTTTTGCCAACATTC-GAAT-T--AT-TTAT-TCATGC-TAGTTTACCGTGTTCCGTTTTTGGGGGTTTT----------------------------TTTCAT-----------------------------TACTATTATAGGGTTTTGT-ATTAAACTAATT-----TAAAATTT-AAAAATCTACT-CT---------------------------------------------------TGCGATA------CTCATCC-GGTTTCAG-TTCGGTTTTA--AGATCAGAGCA--TAACGCACT----CGCTCGCTTTAATAATCT-	Size	Hit Count	Total Norm	Total
No Reads

dp5

GCAGTT-GT---TTGGGGGATTTAAATGCTTGTTTATTAAGT---------TGT-TCA------------------GTT-TTTGATTTAAT-TTTAATATCATTTTAGAATCTGATATG-ATTTC-----------TTTT-----------------TTGCAACATTT-GAAT-T-----TTAG-TCATGC-TGGTTTATCGTGTTCCGTG-----------------------------------------T---T-----------------------------TATCCGTT-A-AGTTTTAGATTTAAACTAATT-----TAAAATTT-AAAATTCTAATTC------------------------------------------------------------------TCATCC-A--TCCATATTTGGATTCA--AGATCAGCACAAATATCGATCG----CGTTCGC---TA-AGTCTA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................................................................................................................................................................................TATCGTGTTCCGTG-----------------------------------------T---T-----------------------------TATCC.................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACAAATATCGATCG----CGTTC..............	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

GCAGTT-GT---TTGGGGGATTTAAATGCTTGTTTATTAAAT---------TGT-TCA------------------GTT-TTTGATTTAAT-TTTAATATCATTTTAGAATCTGATATG-ATTTC-----------TTTT-----------------TTGCAACATTT-GAAT-T-----TTAG-TCATGC-TGGTTTATCGTGTTCCGTG-----------------------------------------T---T-----------------------------TATCCGTT-A-ATTTTTAGATTTAAACTAATT-----TAAAATTT-AAAATTCTAATTC------------------------------------------------------------------TCATCC-A--TCCATATTTGGATTCA--AGATCAGCACAAATATCGATCG----CGTTCGC---TA-AGTCTA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

GTTCTTTCT------TTGGATTTAAATGTTCATTTATTGAATTAAGTTTTTTGT-TCA------------------GTT----CATTTAAT-GTGTTTATCATTTTAGAATCTGATATG-ATTTT---------------------------------TGCAACATTTTGGAATT--TTATTAG-CCATTTATGGTTTATCGCTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

TTTGAT-------T--TGAATTTAAGTGTTCATTTATTGAGT---------T-T-AC-------------------GTTTTTCCCTTTAAT-GTTAATATCATTTTAGAATCTGATATG-ATTTTCGGTTTTTTTTT--GTTTTTTTTT--TTTTTTTTACAACATTT-CAAT-T------TA-----------GTTTA-CGTTTTCTGT------------------------------------------TTATTTACGGGTTTAATTTTGTTTTGGTTTTT--TTT----T----AATTTTC-TTTAAATTTTTTTTGT-TTAATTTT-AAAAATCTAAG-CTTATGTGGTCTTTGCAATTGTTGACGCTCTTCCGGGCCTCTGGCTTTTCGCCAGCA-----------CATCTTTGCCTCAG-TCCATTTAAATGAGATCGGCGC-----------------------ACATA-TATAT-	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................TATGTGGTCTTTGCAATTGTTGACG.................................................................................................................	25	1	15.00	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	2	5	0	2	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TATGTGGTCTTTGCAATTGTTGACGC................................................................................................................	26	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	2	5	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TGTGGTCTTTGCAATTGTTGACGCTC..............................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TATGTGGTCTTTGCAATTGTTGACGCTC..............................................................................................................	28	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TGTGGTCTTTGCAATTGTTGACGC................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TATGTGGTCTTTGCAATTGTTG....................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................TTTAGAATCTGATATG-ATTTTCGGTT..................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................TCTTTGCAATTGTTGACGCTCTTCCGGG.......................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
....................................................................................................................................................................................................................................................................................................................................................................TTGCAATTGTTGACGCTCTTCCGGG.......................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GTGGTCTTTGCAATTGTTGACGCTC..............................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................TACGGGTTTAATTTTGTTTTGGTTC..........................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................GGTCTTTGCAATTGTTGACGCTCTTCC..........................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................TTT-AAAAATCTAAG-CTTATGTGG...................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................TACAACATTT-CAAT-T------TA-----------GTTTA-CGTT........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TTTT-AAAAATCTAAG-CTTATGTGGTCT................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................TAATTTT-AAAAATCTAAG-CTTATGTGG...................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCCTCAG-TCCATTTAAATGAGATCG.......................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGCCTCAG-TCCATTTAAATGAGATCG.......................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................TTATGTGGTCTTTGCAATTGTTGACGC................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TTTT-AAAAATCTAAG-CTTATGTGGTC.................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATGAGATCGGCGC-----------------------ACATA-TATA..	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTTAAATGAGATCGGCGC-----------------------ACATA-TA....	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GTGGTCTTTGCAATTGTTGACGCTCTT............................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................GATATG-ATTTTCGGTTTTTTTTT--GT.......................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................GTCTTTGCAATTGTTGACGCTCTTCCGG........................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATGAGATCGGCGC-----------------------ACATA-TATAT-	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TGCAATTGTTGACGCTCTTCCGGG.......................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................TTGCAATTGTTGACGCTCTTCC..........................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TATCATTTTAGAATCTGATATG-ATTTT.......................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................TCAG-TCCATTTAAATGAGATCGGC.....................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................TTTTCGCCAGCA-----------CATCTTTGCCTCAG-.........................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TGCAATTGTTGACGCTCTTCCGGGCCT....................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................G-CTTATGTGGTCTTTGCAATTGTTGAC..................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................TCATTTTAGAATCTGATATG-ATTTT.......................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAATGAGATCGGCGC-----------------------ACA.........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TTTGCAATTGTTGACGCTCTTCCGGGCC.....................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................ATGTGGTCTTTGCAATTGTTGACGCTC..............................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TTAATTTT-AAAAATCTAAG-CTTATG......................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TATGTGGTCTTTGCAATTGTTGAC..................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TTCGCCAGCA-----------CATCTTTGCCTCAG-.........................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TTCCGGGCCTCTGGCTTTTCGCCAGCA-----------........................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................TTAGAATCTGATATG-ATTTTCGGTTTT................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TAAG-CTTATGTGGTCTTTGCAATTGT......................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TTCGCCAGCA-----------CATCTTTGCCTCAG-T........................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TGTGGTCTTTGCAATTGTTGACGCT...............................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................ATTTTCGGTTTTTTTTT--GTTT.....................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................TTTTTTTT--TTTTTTTTACAA.................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTTTT--TTTTTTTTACAA.................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................TTTTTTT--TTTTTTTTACAA.................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TTTTTTTTT--GTTTTTTTTT--T............................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

G-----------------AATTTAAATGTTCATTTATTGAGT---------T---TAC------------------GTT-TTCCATTTAAT-GTTAATATCATTTTAGAATCTGATATG-ATTTT-----------G--CTTTT---TT--TTTTCTTTACAACATTT-GAAA-TTTGT-TTAG-CTGTTT-GGGTTTAT---GTTT---------------------------------------------TTATT-----------------------TGTT--ATTTAGTT-A-TGTTTTT-------ACGTT-TTTATTGAATTTTTAAAAAATTTACT-TT------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

G-----------------AATTTAAATGTTCATTTATTGAGT---------TTT-TTTTTGTTTTTTGTCTTCTGCGTT-TTGCATTTAATGTTTAATATCATTTTAGAATCTGATATG-ATTTT-----------T--GTTTTTTGTT--TTATTTTTACAACATTTTGAA-----AT-TTAGCTTATGT-TGGTTTACG-TTTTTTTT----------------TTGTTTATTATGTGTGTTCTTGTATTTTAAT-----------------------------TT-----T-A-AGTTTAATATTTAAACTAGTT-TG--TTAATTTT-AAAAATCTA------------------------------------------------------------------------------------------------------------------------------------------ACCT-	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_24478

3l:20395141-20395290 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads