ID:

dsi_24470

Coordinate:

3r:4419239-4419298 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

CDS [3r_4419032_4419238_+]; exon [3r_4416807_4419238_+]; CDS [3r_4419299_4419483_+]; exon [3r_4419299_4419483_+]; intron [3r_4419239_4419298_+]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------################################################## CCTACTTCAGCGACGAGAAGGTCCTTATACCCGACGATGATAGCACAAACGTAAGACCCGCTTGAATAGTAATGTTACTCAAACTTTATCTAATATCTGGTGATCTGCAGGTGGGTTTCAGCTTTCGCAAGCTGTGGGCCTTCACGGGACCCGGTTTTCT ************************************************(((.((..((((.((.((((((.(((.....))).))).)))...)).)))).)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR902008 ovaries	SRR553487 NRT_0-2 hours eggs
...........................................................................................................................TTCGCAAGCTGTGGGCCTTCACGGGAA..........	27	1	1	2.00	2	0	2	0
....................................................................................................................TTCAGCTTTCGCAAGCTGTGGGC.....................	23	0	1	1.00	1	1	0	0
.........................................................................................................................CTTTCGCAAGCTGTGGGCCT...................	20	0	1	1.00	1	1	0	0
..........................................................................................................................TTTCGCAAGCTGTGGGCCC...................	19	1	1	1.00	1	1	0	0
...............................................................................................................TGTGTTTCAGGTTTCTCAAGCT...........................	22	3	2	0.50	1	0	0	1
.............................................................................................................................CGCAAGCTGTGGGGGTTC.................	18	2	2	0.50	1	0	0	1

Anti-sense strand reads

GGATGAAGTCGCTGCTCTTCCAGGAATATGGGCTGCTACTATCGTGTTTGCATTCTGGGCGAACTTATCATTACAATGAGTTTGAAATAGATTATAGACCACTAGACGTCCACCCAAAGTCGAAAGCGTTCGACACCCGGAAGTGCCCTGGGCCAAAAGA ************************************************(((.((..((((.((.((((((.(((.....))).))).)))...)).)))).)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries
......................................................CTGGGCAAACTTTTCATT........................................................................................	18	2	2	0.50	1	1	0	0	0	0
..........................................................GCGAACTTATGACTAC......................................................................................	16	2	20	0.20	4	0	4	0	0	0
......AGTCGCTGCACTTCC...........................................................................................................................................	15	1	8	0.13	1	0	0	1	0	0
....................................................................................................ACTAGACATCCACACAA...........................................	17	2	17	0.06	1	0	0	0	1	0
..........................................................................................................................AAAGCGTTAGACACC.......................	15	1	19	0.05	1	0	0	0	0	1

Generated: 04/24/2015 at 06:56 AM