ID:

dsi_24465

Coordinate:

3l:15925772-15925891 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_15925760_15925771_+]; five_prime_UTR [3l_15925726_15925759_+]; exon [3l_15925726_15925771_+]; exon [3l_15925892_15926384_+]; CDS [3l_15925892_15926152_+]; intron [3l_15925772_15925891_+]

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

----##############################################------------------------------------------------------------------------------------------------------------------------################################################## TTCTATGTCAAATCGTTGCAAACCATCAACAAAACAAAATGTTCAAGCTGGTGAGTGCTCTAAGCCAATCAAGAATATTCTTTGTAAAAAGAAAAGGATTCTGTAAAAACAGTGAACATATGCTGACATCCTTCTAATATATATATATATATATTTGAATTGTTTTCCAGTGCGTCTTCGTTGCTCTCCTTAGCCTGGCTGCTGCTGCCCCAGCTCCCGC ************************************************.......((......((((((((.((((....((((.......(((((...(((.....((((........))))))))))))......)))).....)))).))))).)))......))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O002 Head	M023 head	SRR902008 ovaries	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	M053 female body	M024 male body	SRR553488 RT_0-2 hours eggs
.....................................................................................................TGAAGAAACAGTGAACATGTGCT................................................................................................	23	3	1	2.00	2	0	0	2	0	0	0	0	0	0	0
..................CAAACCATCAACAAAACAAAA.....................................................................................................................................................................................	21	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0
............TCGTTGCAAACCATCAACAAAACA........................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................CTGTGCGTCTTCGTTGCTCC.................................	20	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................ATGTTCAAGCTGGTGAGTGCTCT...............................................................................................................................................................	23	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............TCGTTGCAAACCATCAACAAA...........................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
......................................................................................AAAAGAGAAGGGTTCTGTACA.................................................................................................................	21	3	2	0.50	1	0	0	0	1	0	0	0	0	0	0
...........................................................................................AAAAGGATTCTGAAAAA................................................................................................................	17	1	4	0.50	2	0	0	0	0	1	0	1	0	0	0
.....................................................................................................................................................................TCCAGTGCGTCGTCGTT......................................	17	1	3	0.33	1	0	0	0	0	0	1	0	0	0	0
...................................TAAATGTTGAAGCTGGTG.......................................................................................................................................................................	18	2	6	0.17	1	0	0	0	0	0	0	0	1	0	0
..........................................................................................GAAAAGGATTCGGTGAAAA...............................................................................................................	19	2	8	0.13	1	0	0	0	0	0	0	0	0	1	0
............................................................................................AAAGGATTCTGAAAAA................................................................................................................	16	1	13	0.08	1	0	0	0	0	0	0	1	0	0	0
.............................................................................................AAGGATTGTGTAACAAC..............................................................................................................	17	2	14	0.07	1	0	0	0	0	1	0	0	0	0	0
............................................................TAAGCCGATCAAGAA.................................................................................................................................................	15	1	15	0.07	1	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................TGTTGTACAGTGCGTCTTG.........................................	19	3	18	0.06	1	0	0	0	0	0	0	0	0	0	1
............TCGTTGGCAACCATCATCA.............................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1	0	0	0	0
....GTACCAAATCGTTGCAAAC.....................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	1

Anti-sense strand reads

AAGATACAGTTTAGCAACGTTTGGTAGTTGTTTTGTTTTACAAGTTCGACCACTCACGAGATTCGGTTAGTTCTTATAAGAAACATTTTTCTTTTCCTAAGACATTTTTGTCACTTGTATACGACTGTAGGAAGATTATATATATATATATATAAACTTAACAAAAGGTCACGCAGAAGCAACGAGAGGAATCGGACCGACGACGACGGGGTCGAGGGCG ************************************************.......((......((((((((.((((....((((.......(((((...(((.....((((........))))))))))))......)))).....)))).))))).)))......))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo	SRR902009 testis	M025 embryo	SRR553485 Chicharo_3 day-old ovaries	M023 head	SRR553488 RT_0-2 hours eggs	M024 male body	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs
.................................................................................ACCATTTTTCTTTTCCTGA........................................................................................................................	19	2	5	12.40	62	45	0	8	0	0	4	3	0	0	1	1
.................................................................................ACCATTTTTCTTTTCCTAA........................................................................................................................	19	1	3	2.67	8	0	3	0	4	0	0	0	1	0	0	0
.................................................................................ACCATTTTTCTTTTCCTG.........................................................................................................................	18	2	20	2.55	51	18	0	1	0	25	0	0	0	7	0	0
.................................................................................ACCATTTTTCTTTTCCTGAGA......................................................................................................................	21	2	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..................................................................................CCATTTTTCTTTTCCTAA........................................................................................................................	18	1	4	1.00	4	0	4	0	0	0	0	0	0	0	0	0
.................................................................................ACCATTTTTCTTTTCCTA.........................................................................................................................	18	1	3	0.67	2	0	1	0	0	0	0	1	0	0	0	0
.................................................................................ACCATTTTTCTTTTCC...........................................................................................................................	16	1	20	0.55	11	0	2	0	0	0	5	0	3	0	0	1
..................................................................................ACATTTTTCTTTTCC...........................................................................................................................	15	0	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................ACCATTTTTCTTTTCCT..........................................................................................................................	17	1	9	0.33	3	0	2	0	0	0	1	0	0	0	0	0
.................................................................................AGCATTTTTCTTTTCCTGATA......................................................................................................................	21	3	5	0.20	1	1	0	0	0	0	0	0	0	0	0	0
.................................................................................ACCATTTTTCTTTTCCTGACA......................................................................................................................	21	3	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GTCGCGAAGCAGCAACGAGA.................................	20	3	9	0.11	1	0	0	0	0	0	0	0	0	0	1	0
.................................................................................ACCATTTTTCTTTTCCTGAAA......................................................................................................................	21	3	11	0.09	1	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................AGGAAGAGTATATATA............................................................................	16	1	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..............CAACGGTTGGTATTTGTT............................................................................................................................................................................................	18	2	17	0.06	1	0	0	0	0	0	0	0	0	1	0	0
..................................................................................CCATTTTTCTTTTCCTGA........................................................................................................................	18	2	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0
.............................................................................ATGAAACATTTTTCT................................................................................................................................	15	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1

Generated: 04/23/2015 at 10:28 PM