ID:

dsi_24445

 Coordinate:

3l:22545688-22545763 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.0 -13.9 -13.8

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DMRT1BLINER1+

Sense Strand Reads

TGGGCGAAATTCCGAGAACTCAGCAAGGTGAGCCTTTGCTCGAAGTAGAGGTATAAGAGCGATCTGGATGCGGCGATCTTAGGCCTCTGTGCGCACCGGTGCTTAAAGAATAACACTATCCTGCAGCGGACTGGGCGAGGCTACGACAGCAGAGGAGCTCCGCAGCTGCGAGAGGA
**************************************************......(((((..((((.((((((........))).......))))))))))))......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 O001
Testis
 O002
Head
 M025
embryo
 M023
head
 M053
female body
 SRR1275487
Male larvae
TGGGCGAAATTCCGAGAACTCAGCAAGG.................................................................................................................................................... 28 0 1 252.00 252 94 0 110 40 8 0 0 0 0 0 0 0 0
TGGGCGAAATTCCGAGAACTCAGC........................................................................................................................................................ 24 0 1 180.00 180 77 0 66 29 8 0 0 0 0 0 0 0 0
............................TGAGCCTTAGGTCGAAGTAGAGGTA........................................................................................................................... 25 2 1 56.00 56 4 47 0 1 1 3 0 0 0 0 0 0 0
...................................TAGGTCGAAGTAGAGGTATAAGAGCGA.................................................................................................................. 27 2 1 39.00 39 0 35 0 0 1 3 0 0 0 0 0 0 0
.........TTCCGAGAACTCAGCAAGGTGAGCCT............................................................................................................................................. 26 0 1 34.00 34 4 22 3 2 3 0 0 0 0 0 0 0 0
.............................................................................................................................................TACGACAGCAGAGGAGCTCCGCAGC.......... 25 0 1 28.00 28 0 24 2 2 0 0 0 0 0 0 0 0 0
........................................................................................................................................GAGGCTACGACAGCAGAGGAGCT................. 23 0 5 27.60 138 80 0 30 14 14 0 0 0 0 0 0 0 0
TGGGCGAAATTCCGAGAACTCAGCAAG..................................................................................................................................................... 27 0 1 24.00 24 13 0 8 2 1 0 0 0 0 0 0 0 0
.........TTCCGAGAACTCAGCAAGGTGAGCCTT............................................................................................................................................ 27 0 1 24.00 24 10 0 6 6 2 0 0 0 0 0 0 0 0
...........CCGAGAACTCAGCAAGGTGAGCCT............................................................................................................................................. 24 0 1 19.00 19 3 0 9 6 1 0 0 0 0 0 0 0 0
............................TGAGCCTTAGGTCGAAGTAGAGGTATA......................................................................................................................... 27 2 1 19.00 19 0 18 0 0 1 0 0 0 0 0 0 0 0
..........TCCGAGAACTCAGCAAGGTGAGCCT............................................................................................................................................. 25 0 1 18.00 18 6 8 2 2 0 0 0 0 0 0 0 0 0
.........TTCCGAGAACTCAGCAAGGTGAGCC.............................................................................................................................................. 25 0 1 17.00 17 5 11 0 0 0 1 0 0 0 0 0 0 0
..........TCCGAGAACTCAGCAAGGTGAGCCTT............................................................................................................................................ 26 0 1 11.00 11 4 1 4 2 0 0 0 0 0 0 0 0 0
.........................................GAAGTAGAGGTATAAGAGCGATCTGGA............................................................................................................ 27 0 1 9.00 9 1 5 0 1 0 2 0 0 0 0 0 0 0
............................TGAGCCTTAGGTCGAAGTAGAGGTAT.......................................................................................................................... 26 2 1 9.00 9 0 9 0 0 0 0 0 0 0 0 0 0 0
..................................TTAGGTCGAAGTAGAGGTATAAGAG..................................................................................................................... 25 2 1 8.00 8 0 7 0 0 0 1 0 0 0 0 0 0 0
..............................................................TCTGGATGCGGCGATCTTAGGCCTC......................................................................................... 25 0 1 8.00 8 1 0 5 1 0 0 1 0 0 0 0 0 0
........................................................................................................................................GAGGCTACGACAGCAGAG...................... 18 0 5 8.00 40 0 0 0 0 0 0 0 20 20 0 0 0 0
........................................................................................................................................GAGGCTACGACAGCAGAGGA.................... 20 0 5 7.60 38 27 0 4 1 1 0 0 5 0 0 0 0 0
..................................TTAGGTCGAAGTAGAGGTATAAGAGC.................................................................................................................... 26 2 1 7.00 7 0 6 0 0 0 1 0 0 0 0 0 0 0
....................................AGGTCGAAGTAGAGGTATAAGAGCGA.................................................................................................................. 26 2 1 7.00 7 0 6 0 0 1 0 0 0 0 0 0 0 0
................................................................................................CGGCGCTTAGAGAATAGCACT........................................................... 21 3 1 7.00 7 0 0 0 7 0 0 0 0 0 0 0 0 0
............CGAGAACTCAGCAAGGTGAGCCTT............................................................................................................................................ 24 0 1 6.00 6 2 0 3 0 0 0 1 0 0 0 0 0 0
............................TGAGCCTTAGGTCGAAGTAGAGGTAA.......................................................................................................................... 26 3 1 6.00 6 0 6 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GAGGCTACGACAGCAGAGGAGCTC................ 24 0 5 5.40 27 10 0 3 2 5 0 2 0 5 0 0 0 0
...........CCGAGAACTCAGCAAGGTGAGCCTT............................................................................................................................................ 25 0 1 5.00 5 2 0 3 0 0 0 0 0 0 0 0 0 0
TGGGCGAAATTCCGAGAACTCAG......................................................................................................................................................... 23 0 1 5.00 5 3 0 2 0 0 0 0 0 0 0 0 0 0
..........TCCGAGAACTCAGCAAGGTGAGCC.............................................................................................................................................. 24 0 1 5.00 5 0 1 1 1 2 0 0 0 0 0 0 0 0
TGGGCGAAATTCCGAGAACTCAGCAAGGT................................................................................................................................................... 29 0 1 5.00 5 1 0 4 0 0 0 0 0 0 0 0 0 0
............................TGAGCCTTTGCTCGAAGTAGAGGTA........................................................................................................................... 25 0 1 5.00 5 1 0 1 0 1 0 2 0 0 0 0 0 0
.....GAAATTCCGAGAACTCAGCAAGGTGA................................................................................................................................................. 26 0 1 5.00 5 3 2 0 0 0 0 0 0 0 0 0 0 0
.......................................TCGAAGTAGAGGTATAAGAGCGATC................................................................................................................ 25 0 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0 0 0
...................................................TATAAGAGCGATCTGGATGCGGCGC.................................................................................................... 25 1 1 4.00 4 1 2 0 0 1 0 0 0 0 0 0 0 0
..................................TTAGGTCGAAGTAGAGGTATAAG....................................................................................................................... 23 2 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0 0 0
TGGGCGAAATTCCGAGAACTCAGCA....................................................................................................................................................... 25 0 1 4.00 4 1 1 1 0 1 0 0 0 0 0 0 0 0
.....................................................TAAGAGCGATCTGGATGCGGCGATC.................................................................................................. 25 0 1 3.00 3 0 0 1 1 0 0 0 0 0 0 0 1 0
.............................................................................................................................................TACGACAGCAGAGGAGCTCCGCAGCA......... 26 1 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0
........ATTCCGAGAACTCAGCAAGGTGAGCC.............................................................................................................................................. 26 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0
...................................TAGGTCGAAGTAGAGGTATAAGAGCGAA................................................................................................................. 28 3 1 3.00 3 0 2 0 0 0 1 0 0 0 0 0 0 0
.....................................................TAAGAGCGATCTGGATGCGGCG..................................................................................................... 22 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0
...........CCGAGAACTCAGCAAGGTGAGCC.............................................................................................................................................. 23 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0
..................................TTAGGTCGAAGTAGAGGTATAAGA...................................................................................................................... 24 2 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0
............CGAGAACTCAGCAAGGTGAGCCTTA........................................................................................................................................... 25 1 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0
........................AAGGTGAGCCTTAGGTCGAAGTAGAGGA............................................................................................................................ 28 3 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CGGGCTGGGCGAGGCT.................................. 16 1 2 2.50 5 0 0 0 5 0 0 0 0 0 0 0 0 0
...................................TAGGTCGAAGTAGAGGTATAAGAGC.................................................................................................................... 25 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..................................TTAGGTCGAAGTAGAGGTATAAGAGCGA.................................................................................................................. 28 2 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0 0 0
............................................................GATCTGGATGCGGCGATCTTAGGCCT.......................................................................................... 26 0 1 2.00 2 0 0 0 0 0 0 0 0 0 2 0 0 0
...................................TAGGTCGAAGTAGAGGTATAAGAGCGATC................................................................................................................ 29 2 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0
.....GAAATTCCGAGAACTCAGCAAGGTGAGCC.............................................................................................................................................. 29 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0
........................AAGGTGAGCCTTAGGTCGAAGTAGAGGTA........................................................................................................................... 29 2 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TGCAGCGGACTGGGCGAGGCTACGA.............................. 25 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0
.............................................TAGAGGTATAAGAGCGATCTGGATGC......................................................................................................... 26 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................TTAGGTCGAAGTAGAGGTATAAGAGCG................................................................................................................... 27 2 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
...........CCGAGAACTCAGCAAGGTGAGC............................................................................................................................................... 22 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0
................................................................TGGATGCGGCGATCTTAGGCCTCTGT...................................................................................... 26 0 1 2.00 2 0 0 0 1 0 0 1 0 0 0 0 0 0
TGGGCGAAATTCCGAGAACTCAGCAAGGTG.................................................................................................................................................. 30 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TAAGAGCGATCTGGATGCGGT...................................................................................................... 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
...........CCGAGAACTCAGCAAGGTGAG................................................................................................................................................ 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
........................AAGGTGAGCCTTAGGTCGAAGTAGAGG............................................................................................................................. 27 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.....................................................TAAGAGCGATCTGGATGCGGCGATCT................................................................................................. 26 0 1 2.00 2 0 0 1 0 0 0 1 0 0 0 0 0 0
TGCGCGAAATTCCGAGAACTCAGCAAGG.................................................................................................................................................... 28 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TATAAGAGCGATCTGGATGCGGCGA.................................................................................................... 25 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0
.......................................TCGAAGTAGAGGTATAAGAGCGATCT............................................................................................................... 26 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................AGGTCGAAGTAGAGGTATAAGAGCGAA................................................................................................................. 27 3 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
............................................................................TCTTAGGCCTCTGTGCGCACCGGTGCT......................................................................... 27 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TACGACAGCAGAGGAGCTCCGCAGCT......... 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
TGGGCGAAATTCCGAGAACCCAGCAAGG.................................................................................................................................................... 28 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................TATAAGAGCGATCTGGATGCGGCG..................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GAGGCTACGACAGCAGAGGAGCTCCGC............. 27 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................GCGATCTGGATGCGGCGATCT................................................................................................. 21 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 2 0 0
.............................................TAGAGGTATAAGAGCGATCTGGATG.......................................................................................................... 25 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0
...............................................................................TAGGCCTCTGTGCGCACCGGTGCTTAA...................................................................... 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CGGGCTGGGCGAGGC................................... 15 1 9 1.11 10 0 0 0 9 1 0 0 0 0 0 0 0 0
.........................................GAAGTAGAGGTATAAGAGCGAT................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................TAGGTCGAAGTAGAGGTATAAGAGAGA.................................................................................................................. 27 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................GATCTTAGGCCTCTGTGCGCACCGG............................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................TAAGAGCGATCTGGATGCGGCGAT................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................TGAGCCTTAGGTCGAAGTAGAGGTT........................................................................................................................... 25 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........CCGAGAACTCAGCAAGGTGAGCCTTT........................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................TACGACAGCAGAGGAGCTCCGCAGCTA........ 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................TTTGCTCGAAGTAGAGGTATAAGAG..................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................GGCTACGACAGCAGAGGAGCTCCG.............. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......AATTCCGAGAACTCAGCAAGGTGAGCC.............................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CTATCCTGCAGCGGACTGGGCGAG..................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
............................TGAGCCTTAGGTCGAAGTAGAGG............................................................................................................................. 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................CGAGGTAGAGGTATAAGAGCGAT................................................................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........TCCGAGAACTCAGCAAGGTGAGACT............................................................................................................................................. 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................AGCCTTAGGTCGAAGTAGAGGTATA......................................................................................................................... 25 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............CGAGAACTCAGCAAGGTGAGCCT............................................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............CGAGAACTCAGCAAGGTGAGCCTTAGGT........................................................................................................................................ 28 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TTAGGCCTCTGTGCGCACCGGTGCTTAA...................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................TCTTAGGCCTCTGTGCGCACCGGTGCTT........................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................TCGAAGTAGAGGTATAAGAGCGAA................................................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................GGTCGAAGTAGAGGTATAAGAGCGT.................................................................................................................. 25 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........TCCGAGAACTCAGCAGGGTGAGCCT............................................................................................................................................. 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
TGTGCGAAATTCCGAGAACTCAGCAAGG.................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................TAGGTCGAAGTAGAGGTATAAGAGCGAT................................................................................................................. 28 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................TAAAGAATAACACTATCCTGCAGCGGACA............................................ 29 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............CGAGAACTCAGCAAGGTGAGCCTTT........................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................CGAAGTAGAGGTATAAGAGCGATCTGG............................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................GCCTCTGTGCGCACCGGTGCTTAAAGAA.................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........TTCCGAGAACTCAGCAAGGTGAGCCTC............................................................................................................................................ 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
TGGGCAAAATTCCGAGAACTCAGC........................................................................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATCCTGCAGCGGACTGGGCGAGGC................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................GTAGAGGTATAAGAGCGATCTGGATGC......................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................TATAAGAGCGATCTGGATGCGGCGAT................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................TCGAAGTAGAGGTATAAGAGCGAT................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................TAGGTCGAAGTAGAGGTATAAGA...................................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................AACTCAGCAAGGTGAGCCTTTTCTCGA..................................................................................................................................... 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................GGCTACGACAGCAGAGGAGCTCCGCA............ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................CTGCAGCGGACTGGGC........................................ 16 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......AATTCCGAGAACTCAGCAAGGTGAGCCT............................................................................................................................................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................TCAGCAAGGTGAGCCTTAGGTCGAAG................................................................................................................................... 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................TCTGGATGCGGCGAGCTTAGGCCTC......................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................TATAAGAGCGATCTGGATGCGGCGATC.................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....CGAAATTCCGAGAACTCAGCAAGG.................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................TAAGAGCGATCTGGATGCGGCGA.................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................AAGGTGAGCCTTAGGTCGAAGTAGAGGTT........................................................................................................................... 29 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................AGAGGTATAAGAGCGATCTGGATGCGG....................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................TAGAGGTATAAGAGCGATCTGGATGCGGC...................................................................................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..GGCGAAATTCCGAGAACTCAGCAAGG.................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
TGGGCGAAATTCCTAGAACTCAGCAAGG.................................................................................................................................................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
TGGGCGAAATTCCGAGCACTCAGC........................................................................................................................................................ 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
TGGGCGAAATTCCGAGAACTCAGCAAGGC................................................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TCTTAGGCCTCTGTGCGCACCGG............................................................................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................CGGCGCTTAGAGAATAGCAC............................................................ 20 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................GCCTTAGGTCGAAGTAGAGGTATAAGA...................................................................................................................... 27 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TTAAAGAATAACACTATCCTGCAGCGGAC............................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TCTGTGCGCACCGGTGCTTAAAGAAT................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..........TCTGAGAACTCAGCAAGGTGAGCCTT............................................................................................................................................ 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
TGGGCGAAATTCCGAGAACTCAGCAAGGTGA................................................................................................................................................. 31 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CTATCCTGCAGCGGACTGGGCGA...................................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................CGAAGTAGAGGTATAAGAGCGATC................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
TGGTCGAAATTCCGAGAACTCAGCAAG..................................................................................................................................................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................CGAAGTAGAGGTATAAGAGCGATCTGGA............................................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................AGGTATAAGAGCGATCTGGATGCGGC...................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
AGGGCGAAATTCCGAGAACTCAGC........................................................................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
TGGGCGAAATCCCGAGAACTCAG......................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................AGAGGTATAAGAGCGATCTGGATGC......................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................AAGAGCGATCTGGATGCGGCG..................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................AAGGTGAGCCTTTGCTCGAAGTAGAGGTA........................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................GGTCGAAGTAGAGGTATAAGAGCGAT................................................................................................................. 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................TGAGCCTTAGGTTGAAGTAGAGGTA........................................................................................................................... 25 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................TCAGCAAGGTGAGCCTT............................................................................................................................................ 17 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.......AATTCCGAGAACTCAGCAAGGTGAGCCTT............................................................................................................................................ 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................GAAGTAGAGGTATAAGAGCGATCTGG............................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................TAGGTCGAAGTAGAGGTATAAGAGCG................................................................................................................... 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................AGGTGAGCCTTAGGTCGAAGTAGAGGA............................................................................................................................ 27 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
TGGTCGAAATTCCGAGAACTCAGCAAGG.................................................................................................................................................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.TGGCGAAATTCCGAGAACTCAGCAAGG.................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........TCCGAGAACTCAGCAAGGTGAGCCTTA........................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.........TTCCGAGAACTCAGCAAGGAA.................................................................................................................................................. 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................TGAGCCTAAGGTCGAAGTAGAGGTA........................................................................................................................... 25 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TAAAGAATAACACTATCCTGCAGCGGACTGGGC........................................ 33 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................GGCTACGACAGCAGAGGAGCTCCGCAG........... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TAAAGAATAACACTATCCTGCAGCGGAC............................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..GGCGAAATTCCGAGAACTCAGCAAGGAG.................................................................................................................................................. 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TAACACTATCCTGCAGCGGACTGGGC........................................ 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CGACAGCAGAGGAGCTCCGCA............ 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
............CGAGAACTCAGCAAGGTGAGCCTTAGG......................................................................................................................................... 27 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................TTAGGTCGAAGTAGAGGTATAAGAGCGAT................................................................................................................. 29 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.........TTCCGAGAACTCAGCAAGGTGAGCCA............................................................................................................................................. 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................AGGTCGAAGTAGAGGTATAAGAGCGAT................................................................................................................. 27 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................TCTTAGGCCTCTGTGCGCACCGGC............................................................................ 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................GGTATAAGAGCGATCT............................................................................................................... 16 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................TACGACAGCAGAGGAGCTCCGT............. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................TAGGTCGAAGTAGAGGTATAAAA...................................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................AGTAGAGGTATAAGAGCGATCTGGA............................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................TGAGCCTTAGGTCAAAGTAGAGGTA........................................................................................................................... 25 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........CCGAGAACTCAGCAAGGTGAGT............................................................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................AAGGTGAGCCTTAGGTCGAAGTAGAG.............................................................................................................................. 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................AAGGTGAGCCTTTGCTCGAAGTAGA............................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................AGCGATCTGGATGCGGCG..................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
TGGGCGAAATTCCGAGAACTCAGCAAGGA................................................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................TGAGCCTTTGCTCGAAGTATAGGTA........................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................TCGAAGTACAGGTATAAGAGCGA.................................................................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....CGAAATTCCGAGAACTCAGCAAGGTGA................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................TTAGGTCGAAGTAGAGGTATAAGAGCA................................................................................................................... 27 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........TCCGAGAACTCAGCAAGGGGAGCCTT............................................................................................................................................ 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GCGGACTGGTCGAGG.................................... 15 1 13 0.92 12 0 0 0 0 12 0 0 0 0 0 0 0 0
........................................................................................................................................GAGGCTACGACAGCAGAGGAGCTCC............... 25 0 5 0.80 4 1 0 0 0 2 0 1 0 0 0 0 0 0
............................................................................................................................AGCGGACTGGTCGAG..................................... 15 1 11 0.73 8 0 0 0 0 8 0 0 0 0 0 0 0 0
..............................................................................................................TAACACTATCCTGCAGCGGACTGGACG....................................... 27 1 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.....................................................TAAGAGCGATCTGGATGCGGCGC.................................................................................................... 23 1 3 0.67 2 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GAGGCTACAACAGCAGAGGAGCT................. 23 1 5 0.60 3 2 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................GAGGCTACGACAGCAGAGGAGC.................. 22 0 5 0.60 3 3 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TAACACTATCCTGCAGCGGACTGGGTT....................................... 27 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................AATAACACTATCCTGCAGCGGACT............................................ 24 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................TAGGTCGAAGTAGAGGTATA......................................................................................................................... 20 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................ATAAGATTGATCTGGATACGG....................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1
...........................................................................................................................TAGCGGACTGGTCGAGG.................................... 17 2 12 0.42 5 0 0 0 0 5 0 0 0 0 0 0 0 0
........................................................................................................................................GAGGCTACGACAGTAGAGGAGCT................. 23 1 5 0.40 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................AGGCTACGACAGCAGAGGATCTCC............... 24 1 5 0.40 2 0 0 0 2 0 0 0 0 0 0 0 0 0
........................................................................................................................................GAGACTACGACAGCAGAGGAGCTC................ 24 1 5 0.40 2 0 0 0 0 0 0 2 0 0 0 0 0 0
.............................................................................................................................................TACGACAGCAGAGGAGCTCC............... 20 0 5 0.40 2 0 0 0 0 0 0 2 0 0 0 0 0 0
........................................................................................................................................GATGCTACGACAGCAGAGGAGCT................. 23 1 5 0.40 2 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................AGCGGACTGGTCGAGG.................................... 16 1 9 0.33 3 0 0 0 0 3 0 0 0 0 0 0 0 0
.............................................................................................................................................TACGACAGCAGAGGAGCT................. 18 0 6 0.33 2 0 0 0 0 0 0 2 0 0 0 0 0 0
..............................................................................................................TAACACTATCCTGCAGCGGACTGGACGA...................................... 28 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............CGAGAACTCAGAAAGGTGAGT............................................................................................................................................... 21 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........TCCTTAGAACTCAGCAAGGTGAGC............................................................................................................................................... 24 3 6 0.33 2 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................GAGGCTACGACGGCACAGGATCT................. 23 3 6 0.33 2 1 0 0 1 0 0 0 0 0 0 0 0 0
............CGAGAACTCAGAAAGGT................................................................................................................................................... 17 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................GAGGCTACGACAGCAGA....................... 17 0 12 0.25 3 2 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TACGACAGCAGATGAGCTCCGCAGC.......... 25 1 8 0.25 2 0 1 0 0 0 0 1 0 0 0 0 0 0
.................ACTCAGAAAGGTGAGCC.............................................................................................................................................. 17 1 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................TAGCGGACTGGTCGAG..................................... 16 2 20 0.25 5 0 0 0 0 5 0 0 0 0 0 0 0 0
...................................................................................................................................TGGGCGAGGCTACGACAGCAGATGAGC.................. 27 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CGACAGCAGAGGAGCTCCGCAGCTGCA...... 27 1 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................TGATTAGGCCTCTGTGCGCACCGGTG........................................................................... 26 3 9 0.22 2 0 2 0 0 0 0 0 0 0 0 0 0 0
............TTAGAACTCAGCAAGGTGAGC............................................................................................................................................... 21 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................GAGGCTACGACAGCCGAGGAGCT................. 23 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................TACGACAGCAGAGGAGCTC................ 19 0 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................GAGGCTACGAGAGCAGAGGAGCT................. 23 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GAGGCTACAACAGCAGAGGAGCTC................ 24 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GAGGCTACGAGAGCAGAGGA.................... 20 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GAGGCTACGACAGCAGAGGAGCTCT............... 25 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............TAGAACTCAGCAAGGTGA................................................................................................................................................. 18 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................GAGACTACGACAGCAGAGG..................... 19 1 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................GAGGCTACGACAGCAGAGGAG................... 21 0 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................GACAGCAGAGGAGCTCC............... 17 0 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................GAGACTACGACAGCAGAG...................... 18 1 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................TACGACAGCAGAGGAGC.................. 17 0 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................TACGACAGCAGAGGA.................... 15 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GAGGCTACGACAGCATAGGAGCTCC............... 25 1 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................TACGACAGCATAGGAGCTC................ 19 1 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................GAGGCTACGACAGCATAGGAGCT................. 23 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................ACGGGCTGGGCGAGGCT.................................. 17 2 15 0.13 2 0 0 0 0 2 0 0 0 0 0 0 0 0
...................................................................................................................CTATCCTGCAGCGGACTGGTCGA...................................... 23 1 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TAGCGGACTGGGCGA...................................... 15 1 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................TGATTAGGCCTCTGTGCGCACCGGT............................................................................ 25 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................AGCGGACTGGTCGAGGA................................... 17 2 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0
..................................................................................GCCTCAGTGTGCACCGG............................................................................. 17 2 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................TATCCTGCAGCGGACTGGTT........................................ 20 2 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CTATCCTGCAGCGGAC............................................. 16 0 14 0.07 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................CTATCCTGCAGCGGA.............................................. 15 0 14 0.07 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................ATCCTGCACCGGACTG........................................... 16 1 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................CTATCCTGCAGCGGACTGTTT........................................ 21 3 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GCATCGGTGCTTAGAG.................................................................... 16 2 19 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................GTAGCGTACTGGTCGAGG.................................... 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................ACAGCGGACTGGTCGAG..................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACCCGCTTTAAGGCTCTTGAGTCGTTCCACTCGGAAACGAGCTTCATCTCCATATTCTCGCTAGACCTACGCCGCTAGAATCCGGAGACACGCGTGGCCACGAATTTCTTATTGTGATAGGACGTCGCCTGACCCGCTCCGATGCTGTCGTCTCCTCGAGGCGTCGACGCTCTCCT
**************************************************......(((((..((((.((((((........))).......))))))))))))......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 M053
female body
 SRR902009
testis
 M024
male body		 O001
Testis
 GSM343915
embryo
..........................................TTCATCTCCATATTCTCGCTAGACCT............................................................................................................ 26 0 1 13.00 13 0 4 2 0 1 6 0 0 0 0 0 0
.......................................................TCTCGCTAGACCTACGCCGCTAGAAT............................................................................................... 26 0 1 12.00 12 2 3 5 0 1 0 1 0 0 0 0 0
.............................................................................................................................CGCCTGACCCGCTCCGATGCT.............................. 21 0 1 8.00 8 0 6 2 0 0 0 0 0 0 0 0 0
..............................................................AGACCTACGCCGCTAGAATCCGGAG......................................................................................... 25 0 1 8.00 8 0 3 5 0 0 0 0 0 0 0 0 0
...............................CGGAAACGAGCTTCATCTCCATATT........................................................................................................................ 25 0 1 8.00 8 0 2 2 0 2 2 0 0 0 0 0 0
..................................................................................................CACGAATTTCTTATTGTGATAGGACGT................................................... 27 0 1 7.00 7 6 0 0 1 0 0 0 0 0 0 0 0
...........................................TCATCTCCATATTCTCGCTAGACCT............................................................................................................ 25 0 1 5.00 5 2 1 0 0 2 0 0 0 0 0 0 0
.................................................................................................CCACGAATTTCTTATTGTGATAGGACGT................................................... 28 0 1 5.00 5 0 0 0 0 0 0 1 2 0 1 1 0
..............................................................AGACCTACGCCGCTAGAATCCGGAGA........................................................................................ 26 0 1 5.00 5 0 4 1 0 0 0 0 0 0 0 0 0
............................................................................AGAATCCGGAGACACGCGTGGCCACGAAT....................................................................... 29 0 1 4.00 4 0 0 4 0 0 0 0 0 0 0 0 0
......TTTAAGGCTCTTGAGTCGTTCCACT................................................................................................................................................. 25 0 1 4.00 4 0 1 0 3 0 0 0 0 0 0 0 0
...........................................................................................................................GTCGCCTGACCCGCTCCGATGCT.............................. 23 0 1 4.00 4 0 3 1 0 0 0 0 0 0 0 0 0
.....................................................................CGCCGCTAGAATCCGGAGACACGCGT................................................................................. 26 0 1 4.00 4 2 0 0 0 0 0 0 2 0 0 0 0
...CGCTTTAAGGCTCTTGAGTCGTTCCACT................................................................................................................................................. 28 0 1 4.00 4 0 1 1 0 1 1 0 0 0 0 0 0
....................................................................................................CGAATTTCTTATTGTGATAGGACGT................................................... 25 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0
...................AGTCGTTCCACTCGGAATCCAGCTT.................................................................................................................................... 25 2 1 3.00 3 0 0 0 3 0 0 0 0 0 0 0 0
...............................................CTCCATATTCTCGCTAGACCTACGC........................................................................................................ 25 0 1 3.00 3 1 0 0 0 0 1 1 0 0 0 0 0
.......TTAAGGCTCTTGAGTCGTTCCACT................................................................................................................................................. 24 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0
....................................................................ACGCCGCTAGAATCCGGAGACACGCGT................................................................................. 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
...................AGTCGTTCCACTCGGAATCCAGCTTCA.................................................................................................................................. 27 2 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
............................ACTCGGAATCCAGCTTCATCTCCATAT......................................................................................................................... 27 2 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0
..............................................................................................TGGCCACGAATTTCTTATTGTGAT.......................................................... 24 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0
...................AGTCGTTCCACTCGGAAACGAGCTTCAT................................................................................................................................. 28 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................CGCCTGACCCGCTCCGATGCTGTCGTCT....................... 28 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................TCCGATGCTGTCGTCTCCTCGAGGCGT............ 27 0 1 2.00 2 0 0 0 0 1 0 0 1 0 0 0 0
.......................................................................................................................................................CTCCTCGAGGCGTCGACGCTCTCCT 25 0 1 2.00 2 1 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................AATGCTGTCGTCTCCTCGAGGCGT............ 24 1 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0
........................................................CTCGCTAGACCTACGCCGCTAGAAT............................................................................................... 25 0 1 2.00 2 0 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................GGCCACGAATTTCTTATTGTGATAGGA...................................................... 27 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................ATGCTGTCGTCTCCTCGAGGCGT............ 23 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................AGGACGTCGCCTGACCCGCTCCGATGCT.............................. 28 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0
.........AAGGCTCTTGAGTCGTTCCACT................................................................................................................................................. 22 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
..........................................................................................................................CGTCGCCTGACCCGCTCCGATGCT.............................. 24 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................AGACACGCGTGGCCACGAATTTCTTAT................................................................ 27 0 1 2.00 2 0 0 1 0 0 1 0 0 0 0 0 0
.........................................................................................................TTCTTATTGTGATAGGACGTCGCCTGA............................................ 27 0 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0 0
......................CGTTCCACTCGGAAACGAGCTTCAT................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................TTCATCTCCATATTCTCGCTAGACCTA........................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................TGCCTGACCCGCTCCGATGCT.............................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................AGCGTGGCCACGAATTTCTTATTGTGAT.......................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TTGCGATAGGACGTCGCCTGACCCG........................................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......TTTAAGGCTCTTGAGTCGTTCCAC.................................................................................................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................TCTCGCTAGACCTACGCCGCTA................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................ACGAATTTCTTATTGTGATAGGACGT................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................CTACGCCGCTAGAATCCGGAGACACG.................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......TTTAAGGCTCTTGAG........................................................................................................................................................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................CATCTCCATATTCTCGCTAGACCTA........................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................GCCGCTAGAATCCGGAGACACGCGT................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................GGAGACACGCGTGGCCACGAATTTCTT.................................................................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................CATCTCCATATTCTCGCTAGACCT............................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................CTACGCCGCTAGAATCCGGAGACACGC................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................TCGGAATCCAGCTTCATCTCCATAT......................................................................................................................... 25 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................GACCCGCTCCGATGCTGTCGTCTCCT.................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................CTCCGATGCTGTCGTCTCCTCGAGGCGT............ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................CATCTCCATATTCTCGCTAGACCTAC.......................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................AGACCTACGCCGCTAGAATCCGGAGACA...................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................CTTCATCTCCATATTCTCGCTAGACCT............................................................................................................ 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
......TTTAAGGCTCTTGAGTCGTTCCACTCG............................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................CCTACGCCGCTAGAATCCGGAGA........................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................GATAGGACGTCGCCTGACCCGCT...................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CGCCTGACCCGCTCCGATGCTGTCG.......................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................GCTAGACCTACGCCGCTAGAATCCG............................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................GGACCTACGCCGCTAGAATCCGGAGA........................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................CACGAATTTCTTATTGTGATAG........................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......TTAAGGCTCTTGAGTCGT....................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................AGCTTCATCTCCATATTCTCGCTAGACCT............................................................................................................ 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................TCTCGCTAGACCTACGCCGCTAGAATC.............................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................GAGTCGTTCCACTCGGAATCCAGCTT.................................................................................................................................... 26 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................GTGGCCACGAATTTCTTATTGTGATAGGA...................................................... 29 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................GCTTCATCTCCATATTCTCGCTAGAC.............................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................ACGCGTGGCCACGAATTTCTTATTGTGAT.......................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................GCCGCTAGAATCCGGAG......................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................TCGCTAGACCTACGCC....................................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................ACTCGGAATCCAGCTTCATCTCCATATT........................................................................................................................ 28 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................CGGAAACGAGCTTCATCTCCATAG......................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................CGGAAACGAGCTTCATCTCCATAT......................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................AGGACGTCGCCTGACCCGCTCCGGTGCT.............................. 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...CGCTTTAAGGCTCTTGAGTCGTTCCAC.................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................CGCGTGGCCACGAATTTCTTATTGTGAT.......................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................GTTCCACTCGGAAACGAGCTTCATCT............................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ACACGCGTGGCCACGAATTTCTTAT................................................................ 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................TCTCCATATTCTCGCTAGACCTACGC........................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................ACACGCGTGGCCACGAATTTCTTATTGT............................................................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................AAGTCTCTTCGAGGCGTCGACGCTCT... 26 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................................AACTCCATATTCTCGCTAGACCTACGC........................................................................................................ 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................GCCTGACCCGCTCCGATGCTGTCGT......................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TAATCCGGAGACACGCGTGGCCACGAAT....................................................................... 28 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................CGCTAGAATCCGGAGACACG.................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................AGACACGCGTGGCCACGAATTTCTTATT............................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................TATTCTCGCTAGACCTACGCCGCTA................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................ACGCCGCTAGAATCCGGAGACACGC................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........AGGCTCTTGAGTCGTTCCACTCGG.............................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................TATTCTCGCTAGACCTACGCCGCT.................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..CCGCTTTAAGGCTCTTGAGTCGTTCCA................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................GACCCGCTCCGATGCTGTCGTCT....................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TTGTGATAGGACGTCGCCTGACCCG........................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................CGGAAACGAGCTTCATCTCCATATTCT...................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................ACTCGGAAACGAGCTTCATCTCCAT........................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................GTCGCCAGACCCGCTCCGATGCT.............................. 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................ATCCGGAGACACGCGTGGCCACGAAT....................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................CCATATTCTCGCTAGACCTACGCCGCT.................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................AGACCTACGCCGCTAGAATCCGGAGAC....................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................ACGCGTGGCCACGAATTTCTTAT................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................TGTGATAGGACGTCGCCTGACCCGCT...................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................CTCGGAATCCAGCTTCATCTCCATAT......................................................................................................................... 26 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................ACGCGTGGCCACGAATTTCTTATTGT............................................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................TCCACTCGGAAACGAGCTTCATCT............................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................AGTCGTTCCACTCGGAATCCAGCTTC................................................................................................................................... 26 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................GTTCCACTCGGAAACGAGCTTCAT................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................CTAGACCTACGCCGCTAGAATCCGGAG......................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......TTAAGGCTCTTGAGTCGTTCCACTCGG.............................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................ATTGTGATAGGACGTCGCCTGACCCG........................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................TCTCGCTAGACCTACGTCGCT.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................CCTACGCCGCTAGAAT............................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................ATGGCCACGAATTTCTTATTGTGAT.......................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................TCTCCATATTCTCGCTAGACCT............................................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................TATTCTCGCTAGACCT............................................................................................................ 16 0 2 1.00 2 0 0 1 0 0 1 0 0 0 0 0 0
............................................................................AGAATCCGGAGACACGCGTGGCCACGA......................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................CCACTCGGAATCCAGCTTCATCTCCATAT......................................................................................................................... 29 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................TCCATATTCTCGCTAGACCTACGCCGCTA................................................................................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................GGAATCCAGCTTCATCTCCATATTCT...................................................................................................................... 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................ACGCCGCTAGAATCCGGAGACACG.................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............TCTCGAGTCGTTCCTCACGGAA............................................................................................................................................ 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................TCTCGCTAGACCTACGCCGCTAGAATCC............................................................................................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................CTCCATATTCTCGCTAGACCTACGCCGC..................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....GCTTTAAGGCTCTTGAGTCGTTCCA................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................GACCTACGCCGCTAGAATCCGGAGAC....................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................TGGCCACGAATTTCTTATT............................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.CCCGCTTTAAGGCTCTTGAGTCGTTCCA................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
....GCTTTAAGGCTCTTGAGTCGT....................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................ACGAGCTTCGTCGCCATATTA....................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................CGTGATAGGACGTCGCCTGACCCGCT...................................... 26 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TCCTTATTGTGATAGGACGTCGCCTGA............................................ 27 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TTTCTTATTGTGATAGGACGTCG................................................. 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TTATTGTGATAAGACGT................................................... 17 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.......TTAAGGCTGTTGAGTCGCTAC.................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0
.........AAGACTCTTGAGTCGTTCCACT................................................................................................................................................. 22 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................CGCTTATTGTGATAGGACGTCGCCTGA............................................ 27 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TTTTGTGATAGGACGTCA................................................. 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................CCGATGCTGTCGTCTCTTCGAGG............... 23 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TCCGATGCTGTCGTCTCCTCGAGG............... 24 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................CCGATGCTGTCGTCTCCTCGAGGGG............. 25 1 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................CTCCGATGCTGTCGTCTCTTCGAGG............... 25 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TCCGATGTTGTCGTCTCCTCGAGG............... 24 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CGATGCTGTCGTCTCCTCGAGG............... 22 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................CCGATGCTGTCGTCTCCTCGAGG............... 23 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................CTCCGATGCTGTCGTCTCCTCGAGG............... 25 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................ATCCGATGCTGTCGTCTCCTCGAGG............... 25 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0
.........AGGAATCTTGAGTCGTTCCACT................................................................................................................................................. 22 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TGATAGGACGTCGCCTGA............................................ 18 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TTCCGATGCTGTCGTCTCCTCGAGG............... 25 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................CGCCTCCTCGAGGCGT............ 16 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0
...................AGTCGTCCCTCTCGGAAA........................................................................................................................................... 18 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................CTGTCGTCTACTCGAGGCGTCGA......... 23 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................ATGCTGTCGTCGACTCGAGGCGT............ 23 2 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................CTGTCGTCTACTCGAGGCGTCGACG....... 25 1 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0
ACCCCCTGTAAGGCTCT............................................................................................................................................................... 17 2 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................TCCGATGCTGTCGTCT....................... 16 0 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................CTCCGATGCTGTCGTCT....................... 17 0 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................GAGCTTCGTCGCCATAT......................................................................................................................... 17 2 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TTTGTGATAGGACGTCA................................................. 17 2 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................ATAGGACGTCGCCTGA............................................ 16 0 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TCCGATGCTGTCGTCA....................... 16 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
ACCCCCCCTAAGGCTCTTG............................................................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................GAGCTTCGTCGCCATATTA....................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
ACCCGCTTTAAGACTG................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................AGAATGCGTAGACACG.................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:22545638-22545813 + dsi_24445 TGGGC------------GAAATTCCGAGAACTCAGCAAGGTGAGCCTTTGCTCGAAGTAGAGGTATA--------------------------AGAGCGATCTGGATGCGGCGATCT-----TAGGCCTCTGTGCGCACCGGTGCTTAAAGAATAACACTATCCTGCAGCGGACTGGGCGAGGCTACGACAGCAGAGGAGCTCCGCAGCTGC----------------------------------GAGAGGA
droSec2 scaffold_9643:109-332 - TGGGCAGCCACGTACGTAAAATCCGGAGAACGCAGAAAGGTGAGCTGTTGCTTGAGGTAGAGGGGAAAGCTTCGGAAAGCGTTCCCAAGTTTAAGAGCGACCTGGAAGCGGCGCTCAATGACTTGGCCTCTGTGCGCACGGGAGCGCAAAAAATAGCTCTATCTTGCAGCGGATTGGACGAGGCTACGACAGCAGATGAGCTCCACAGCTGCATGGTCGCCCAA-----------------------------
dm3 chrU:4631535-4631742 - TGGGCAGCAACGTACGCAAAATCCGGAGAACACAGCAAGGTGAGCCGTTGCTCGAAGTAGAGGGAAG--------------------------AGAGCGATCTTGAAGCGGCGCTCAAAGATTTGGCCTCTGTGCGCACGGGAGCTCAAAGAAAAGCGCTATCCTGCAGCGGACAGGACCAGGCTTCGACAGCAGAGGAGCTCCACAGCTGCATGGTCGCCCAG-------------------ATCCAGGGGA
droEre2 scaffold_4845:1133613-1133732 + T------------ACGCAAAATACGGAGAACGCAGCAAGGTGAGCTACTGCTGGAAGTAGAGAAAAAAGCCTCGGAAAGCGTTCC-------------------------------------------------------------------------------------------------------------------------ATCTGCCTGGTCACTCAATTCAAAGGCGTCCTGTTAAATCCAGAGGA
droYak3 v2_chr2h_random_004:464317-464553 - TCGGCAAACACGTACGCAAAATACGGAGAACTTATCAAGGTGAGCTGCAGCTGGAAGTAGGGGAAGAAGCCTC-----------CTAAGTTTAAGAGCGATCTTGAGGAGACGCTCAAAGAGAAAGCCACGGTGCATACGGGTGCGCAGAGAATTGCGCTATCTTGTAGCGAAATGGACGAGGCTACGACAGCAGAGGAGCTT-----CTGCCTAGTCACCCAATTCCAGGAAGTACGGTTAAATCCTGAGGA
droFic1 scf7180000453575:7745-7770 - AAG----------------------------------------------------------------------------AGTTTC-------------------------------------------------------------------------------------------------------------------------GAGGTTCTGGGCGATAA------------------------------
droVir3 scaffold_13324:966096-966103 - TCGGTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGGGC------------GAAATTCCGAGAACTCAGCAAGGTGAGCCTTTGCTCGAAGTAGAGGTATA--------------------------AGAGCGATCTGGATGCGGCGATCT-----TAGGCCTCTGTGCGCACCGGTGCTTAAAGAATAACACTATCCTGCAGCGGACTGGGCGAGGCTACGACAGCAGAGGAGCTCCGCAGCTGC----------------------------------GAGAGGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
TGGGC------------GAAATTCCGAGAACTCAGCAAGG.....................................................................................................................................................................................................................281252.00252000000110944080000000
TGGGC------------GAAATTCCGAGAACTCAGC.........................................................................................................................................................................................................................241180.0018000000066772980000000
.....................TTCCGAGAACTCAGCAAGGTGAGCCT..............................................................................................................................................................................................................26134.0034000000342300220000
........................................................................................................................................................................................TACGACAGCAGAGGAGCTCCGCAGC............................................25128.0028000000202000240000
...................................................................................................................................................................................GAGGCTACGACAGCAGAGGAGCT...................................................23527.60138000000308014140000000
TGGGC------------GAAATTCCGAGAACTCAGCAAG......................................................................................................................................................................................................................27124.0024000000813210000000
.....................TTCCGAGAACTCAGCAAGGTGAGCCTT.............................................................................................................................................................................................................27124.0024000000610620000000
.......................CCGAGAACTCAGCAAGGTGAGCCT..............................................................................................................................................................................................................24119.001900000093610000000
......................TCCGAGAACTCAGCAAGGTGAGCCT..............................................................................................................................................................................................................25118.001800000026200080000
.....................TTCCGAGAACTCAGCAAGGTGAGCC...............................................................................................................................................................................................................25117.0017000000050000111000
......................TCCGAGAACTCAGCAAGGTGAGCCTT.............................................................................................................................................................................................................26111.001100000044200010000
.....................................................GAAGTAGAGGTATA--------------------------AGAGCGATCTGGA...................................................................................................................................................2719.00900000001100052000
....................................................................................................TCTGGATGCGGCGATCT-----TAGGCCTC...........................................................................................................................2518.00800000051101000000
...................................................................................................................................................................................GAGGCTACGACAGCAGAG........................................................1858.00400000202000000000000
...................................................................................................................................................................................GAGGCTACGACAGCAGAGGA......................................................2057.6038000050427110000000
........................CGAGAACTCAGCAAGGTGAGCCTT.............................................................................................................................................................................................................2416.00600000032001000000
...................................................................................................................................................................................GAGGCTACGACAGCAGAGGAGCTC..................................................2455.4027000005310252000000
.......................CCGAGAACTCAGCAAGGTGAGCCTT.............................................................................................................................................................................................................2515.00500000032000000000
TGGGC------------GAAATTCCGAGAACTCAG..........................................................................................................................................................................................................................2315.00500000023000000000
......................TCCGAGAACTCAGCAAGGTGAGCC...............................................................................................................................................................................................................2415.00500000010120010000
TGGGC------------GAAATTCCGAGAACTCAGCAAGGT....................................................................................................................................................................................................................2915.00500000041000000000
........................................TGAGCCTTTGCTCGAAGTAGAGGTA............................................................................................................................................................................................2515.00500000011012000000
.................GAAATTCCGAGAACTCAGCAAGGTGA..................................................................................................................................................................................................................2615.00500000003000020000
...................................................TCGAAGTAGAGGTATA--------------------------AGAGCGATC.......................................................................................................................................................2514.00400000000000040000
...............................................................TATA--------------------------AGAGCGATCTGGATGCGGCGC...........................................................................................................................................2514.00400000001010020000
TGGGC------------GAAATTCCGAGAACTCAGCA........................................................................................................................................................................................................................2514.00400000011010010000
.................................................................TA--------------------------AGAGCGATCTGGATGCGGCGATC.........................................................................................................................................2513.00300010010100000000
........................................................................................................................................................................................TACGACAGCAGAGGAGCTCCGCAGCA...........................................2613.00300000000000030000
....................ATTCCGAGAACTCAGCAAGGTGAGCC...............................................................................................................................................................................................................2613.00300000002000010000
.................................................................TA--------------------------AGAGCGATCTGGATGCGGCG............................................................................................................................................2213.00300000000000030000
.......................CCGAGAACTCAGCAAGGTGAGCC...............................................................................................................................................................................................................2313.00300000030000000000
........................CGAGAACTCAGCAAGGTGAGCCTTA............................................................................................................................................................................................................2513.00300000000000030000
..................................................................................................GATCTGGATGCGGCGATCT-----TAGGCCT............................................................................................................................2612.00200200000000000000
.................GAAATTCCGAGAACTCAGCAAGGTGAGCC...............................................................................................................................................................................................................2912.00200000011000000000
....................................................................................................................................................................TGCAGCGGACTGGGCGAGGCTACGA................................................................2512.00200000000002000000
.........................................................TAGAGGTATA--------------------------AGAGCGATCTGGATGC................................................................................................................................................2612.00200000001010000000
.......................CCGAGAACTCAGCAAGGTGAGC................................................................................................................................................................................................................2212.00200000000200000000
......................................................................................................TGGATGCGGCGATCT-----TAGGCCTCTGT........................................................................................................................2612.00200000000101000000
TGGGC------------GAAATTCCGAGAACTCAGCAAGGTG...................................................................................................................................................................................................................3012.00200000002000000000
.................................................................TA--------------------------AGAGCGATCTGGATGCGGT.............................................................................................................................................2112.00200000000000020000
.......................CCGAGAACTCAGCAAGGTGAG.................................................................................................................................................................................................................2112.00200000020000000000
.................................................................TA--------------------------AGAGCGATCTGGATGCGGCGATCT-----...................................................................................................................................2612.00200000010001000000
...............................................................TATA--------------------------AGAGCGATCTGGATGCGGCGA...........................................................................................................................................2512.00200000010100000000
...................................................TCGAAGTAGAGGTATA--------------------------AGAGCGATCT......................................................................................................................................................2612.00200000011000000000
..................................................................................................................TCT-----TAGGCCTCTGTGCGCACCGGTGCT...........................................................................................................2712.00200000020000000000
........................................................................................................................................................................................TACGACAGCAGAGGAGCTCCGCAGCT...........................................2612.00200000000000020000
...............................................................TATA--------------------------AGAGCGATCTGGATGCGGCG............................................................................................................................................2412.00200000002000000000
...................................................................................................................................................................................GAGGCTACGACAGCAGAGGAGCTCCGC...............................................2712.00200000010000010000
................................................................................................GCGATCTGGATGCGGCGATCT-----...................................................................................................................................2112.00220000000000000000
.........................................................TAGAGGTATA--------------------------AGAGCGATCTGGATG.................................................................................................................................................2512.00200000000200000000
..........................................................................................................................TAGGCCTCTGTGCGCACCGGTGCTTAA........................................................................................................2712.00200000000000020000
.....................................................GAAGTAGAGGTATA--------------------------AGAGCGAT........................................................................................................................................................2211.00100000000000001000
................................................................................................................GATCT-----TAGGCCTCTGTGCGCACCGG...............................................................................................................2511.00100000010000000000
.................................................................TA--------------------------AGAGCGATCTGGATGCGGCGAT..........................................................................................................................................2411.00100000000100000000
.......................CCGAGAACTCAGCAAGGTGAGCCTTT............................................................................................................................................................................................................2611.00100000000010000000
........................................................................................................................................................................................TACGACAGCAGAGGAGCTCCGCAGCTA..........................................2711.00100000000000010000
..............................................TTTGCTCGAAGTAGAGGTATA--------------------------AGAG............................................................................................................................................................2511.00100000010000000000
.....................................................................................................................................................................................GGCTACGACAGCAGAGGAGCTCCG................................................2411.00100000000000010000
...................AATTCCGAGAACTCAGCAAGGTGAGCC...............................................................................................................................................................................................................2711.00100000000000010000
..............................................................................................................................................................CTATCCTGCAGCGGACTGGGCGAG.......................................................................2411.00100010000000000000
........................CGAGAACTCAGCAAGGTGAGCCT..............................................................................................................................................................................................................2311.00100000000000010000
....................................................................................................................T-----TAGGCCTCTGTGCGCACCGGTGCTTAA........................................................................................................2811.00100000000000010000
..................................................................................................................TCT-----TAGGCCTCTGTGCGCACCGGTGCTT..........................................................................................................2811.00100000010000000000
...................................................TCGAAGTAGAGGTATA--------------------------AGAGCGAA........................................................................................................................................................2411.00100000000000010000
..................................................................................................................................................TAAAGAATAACACTATCCTGCAGCGGACA..............................................................................2911.00100000000000010000
........................CGAGAACTCAGCAAGGTGAGCCTTT............................................................................................................................................................................................................2511.00100000001000000000
....................................................CGAAGTAGAGGTATA--------------------------AGAGCGATCTGG....................................................................................................................................................2711.00100000000000001000
.............................................................................................................................GCCTCTGTGCGCACCGGTGCTTAAAGAA....................................................................................................2811.00100000001000000000
.....................TTCCGAGAACTCAGCAAGGTGAGCCTC.............................................................................................................................................................................................................2711.00100000010000000000
...............................................................................................................................................................TATCCTGCAGCGGACTGGGCGAGGC.....................................................................2511.00100000000001000000
........................................................GTAGAGGTATA--------------------------AGAGCGATCTGGATGC................................................................................................................................................2711.00100000000001000000
...............................................................TATA--------------------------AGAGCGATCTGGATGCGGCGAT..........................................................................................................................................2611.00100000000100000000
...................................................TCGAAGTAGAGGTATA--------------------------AGAGCGAT........................................................................................................................................................2411.00100000000000010000
.....................................................................................................................................................................................GGCTACGACAGCAGAGGAGCTCCGCA..............................................2611.00100000000000010000
...................................................................................................................................................................CTGCAGCGGACTGGGC..........................................................................1611.00100000010000000000
...................AATTCCGAGAACTCAGCAAGGTGAGCCT..............................................................................................................................................................................................................2811.00100000000100000000
...............................................................TATA--------------------------AGAGCGATCTGGATGCGGCGATC.........................................................................................................................................2711.00100000010000000000
....C------------GAAATTCCGAGAACTCAGCAAGG.....................................................................................................................................................................................................................2411.00100000010000000000
.................................................................TA--------------------------AGAGCGATCTGGATGCGGCGA...........................................................................................................................................2311.00100000010000000000
..........................................................AGAGGTATA--------------------------AGAGCGATCTGGATGCGG..............................................................................................................................................2711.00100000000000010000
.........................................................TAGAGGTATA--------------------------AGAGCGATCTGGATGCGGC.............................................................................................................................................2911.00100000010000000000
..GGC------------GAAATTCCGAGAACTCAGCAAGG.....................................................................................................................................................................................................................2611.00100000000000010000
TGGGC------------GAAATTCCGAGAACTCAGCAAGGC....................................................................................................................................................................................................................2911.00100000001000000000
..................................................................................................................TCT-----TAGGCCTCTGTGCGCACCGG...............................................................................................................2311.00100000010000000000
.................................................................................................................................................TTAAAGAATAACACTATCCTGCAGCGGAC...............................................................................2911.00100000001000000000
................................................................................................................................TCTGTGCGCACCGGTGCTTAAAGAAT...................................................................................................2611.00100100000000000000
TGGGC------------GAAATTCCGAGAACTCAGCAAGGTGA..................................................................................................................................................................................................................3111.00100000010000000000
..............................................................................................................................................................CTATCCTGCAGCGGACTGGGCGA........................................................................2311.00100000000001000000
....................................................CGAAGTAGAGGTATA--------------------------AGAGCGATC.......................................................................................................................................................2411.00100000000000010000
....................................................CGAAGTAGAGGTATA--------------------------AGAGCGATCTGGA...................................................................................................................................................2811.00100000010000000000
............................................................AGGTATA--------------------------AGAGCGATCTGGATGCGGC.............................................................................................................................................2611.00100000001000000000
..........................................................AGAGGTATA--------------------------AGAGCGATCTGGATGC................................................................................................................................................2511.00100000001000000000
..................................................................A--------------------------AGAGCGATCTGGATGCGGCG............................................................................................................................................2111.00100000000000010000
....................................AAGGTGAGCCTTTGCTCGAAGTAGAGGTA............................................................................................................................................................................................2911.00100000001000000000
...............................TCAGCAAGGTGAGCCTT.............................................................................................................................................................................................................1711.00100000000001000000
...................AATTCCGAGAACTCAGCAAGGTGAGCCTT.............................................................................................................................................................................................................2911.00100000010000000000
.....................................................GAAGTAGAGGTATA--------------------------AGAGCGATCTGG....................................................................................................................................................2611.00100000000000010000
......................TCCGAGAACTCAGCAAGGTGAGCCTTA............................................................................................................................................................................................................2711.00100000000000001000
.....................TTCCGAGAACTCAGCAAGGAA...................................................................................................................................................................................................................2111.00100000000000010000
..................................................................................................................................................TAAAGAATAACACTATCCTGCAGCGGACTGGGC..........................................................................3311.00100000010000000000
.....................................................................................................................................................................................GGCTACGACAGCAGAGGAGCTCCGCAG.............................................2711.00100000000000010000
..................................................................................................................................................TAAAGAATAACACTATCCTGCAGCGGAC...............................................................................2811.00100000001000000000
.........................................................................................................................................................TAACACTATCCTGCAGCGGACTGGGC..........................................................................2611.00100000000100000000
..........................................................................................................................................................................................CGACAGCAGAGGAGCTCCGCA..............................................2111.00100000000001000000
.....................TTCCGAGAACTCAGCAAGGTGAGCCA..............................................................................................................................................................................................................2611.00100000000000010000
..................................................................................................................TCT-----TAGGCCTCTGTGCGCACCGGC..............................................................................................................2411.00100100000000000000
.............................................................GGTATA--------------------------AGAGCGATCT......................................................................................................................................................1611.00100000000001000000
........................................................................................................................................................................................TACGACAGCAGAGGAGCTCCGT...............................................2211.00100000000000010000
.......................................................AGTAGAGGTATA--------------------------AGAGCGATCTGGA...................................................................................................................................................2511.00100000000000010000
.......................CCGAGAACTCAGCAAGGTGAGT................................................................................................................................................................................................................2211.00100000000100000000
....................................AAGGTGAGCCTTTGCTCGAAGTAGA................................................................................................................................................................................................2511.00100000000100000000
...............................................................................................AGCGATCTGGATGCGGCG............................................................................................................................................1811.00100001000000000000
TGGGC------------GAAATTCCGAGAACTCAGCAAGGA....................................................................................................................................................................................................................2911.00100000001000000000
....C------------GAAATTCCGAGAACTCAGCAAGGTGA..................................................................................................................................................................................................................2711.00100000010000000000
...................................................................................................................................................................................GAGGCTACGACAGCAGAGGAGCTCC.................................................2550.80400000001021000000
.................................................................TA--------------------------AGAGCGATCTGGATGCGGCGC...........................................................................................................................................2330.67200000001000010000
...................................................................................................................................................................................GAGGCTACGACAGCAGAGGAGC....................................................2250.60300000003000000000
.........................................................................................................................................................TAACACTATCCTGCAGCGGACTGGGTT.........................................................................2720.50100000010000000000
.......................................................................................................................................................AATAACACTATCCTGCAGCGGACT..............................................................................2420.50100000010000000000
........................................................................................................................................................................................TACGACAGCAGAGGAGCTCC.................................................2050.40200000000002000000
........................................................................................................................................................................................TACGACAGCAGAGGAGCT...................................................1860.33200000000002000000
...................................................................................................................................................................................GAGGCTACGACAGCAGA.........................................................17120.25300000012000000000
..........................................................................................................................................................................................CGACAGCAGAGGAGCTCCGCAGCTGC----------------------------------A......2740.25100000000001000000
........................................................................................................................................................................................TACGACAGCAGAGGAGCTC..................................................1950.20100000000001000000
...................................................................................................................................................................................GAGGCTACGACAGCAGAGGAGCTCT.................................................2550.20100000001000000000
...................................................................................................................................................................................GAGGCTACGACAGCAGAGGAG.....................................................2150.20100000000001000000
...........................................................................................................................................................................................GACAGCAGAGGAGCTCC.................................................1760.17100000000001000000
........................................................................................................................................................................................TACGACAGCAGAGGAGC....................................................1760.17100000000001000000
........................................................................................................................................................................................TACGACAGCAGAGGA......................................................1560.17100000001000000000
...............................................................................................................................................................TATCCTGCAGCGGACTGGTT..........................................................................20130.08100000001000000000
..............................................................................................................................................................CTATCCTGCAGCGGAC...............................................................................16140.07100000000001000000
..............................................................................................................................................................CTATCCTGCAGCGGA................................................................................15140.07100000000001000000
..............................................................................................................................................................CTATCCTGCAGCGGACTGTTT..........................................................................21170.06100000000000010000
droSec2
TGGGCAGCCACGTACGTAAAATCCGGAGAACGCAGAAAGGTGAGCTGTTGCTTGAGGTAGAGGGGAAAGCTTCGGAAAGCGTTCCCAAGTTTAAGAGCGACCTGGAAGCGGCGCTCAATGACTTGGCCTCTGTGCGCACGGGAGCGCAAAAAATAGCTCTATCTTGCAGCGGATTGGACGAGGCTACGACAGCAGATGAGCTCCACAGCTGCATGGTCGCCCAA-----------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................CTATCTTGCAGCGGATTGGACGAGG......................................................................25201.903838000
..............................................................................................................................................................CTATCTTGCAGCGGATTGGACGAGGC.....................................................................26201.603232000
..............................................................................................................................................................CTATCTTGCAGCGGATTGGACGAG.......................................................................24201.402827100
.................................................................................................CGACCTGGAAGCGGCGCTCAATG.....................................................................................................................................23201.152323000
...............................GCAGAAAGGTGAGCTGTTGCTTGAG.....................................................................................................................................................................................................25200.901818000
.................................................................................................CGACCTGGAAGCGGCGCTCAATGA....................................................................................................................................24200.751515000
...............................GCAGAAAGGTGAGCTGTTGCTTGAGG....................................................................................................................................................................................................26200.4599000
...............................GCAGAAAGGTGAGCTGTTGCTTGA......................................................................................................................................................................................................24200.3060510
..............................................................................................................................................................CTATCTTGCAGCGGATTGGACGAGT......................................................................25200.2044000
...............................GCAGAAAGGTGAGCTGTTGCTT........................................................................................................................................................................................................22200.2043010
...........................................................................................................................TGGCCTCTGTGCGCACGGGAGCGCAAA.......................................................................................................27200.1530030
...............................................................................................................................................................TATCTTGCAGCGGATTGGACGAGGC.....................................................................25200.1533000
...............................................................................................................................................................TATCTTGCAGCGGATTGGACGAG.......................................................................23200.1533000
...............................GCAGAAAGGTGAGCTGTTGCTTGAGGT...................................................................................................................................................................................................27200.1533000
...............................................................................................................................................................TATCTTGCAGCGGATTGGACGA........................................................................22200.1533000
..................................................................................................GACCTGGAAGCGGCGCTCAATG.....................................................................................................................................22200.1533000
.................................................................................................CGACCTGGAAGCGGCGCTCAATGAT...................................................................................................................................25200.1533000
..............................CGCAGAAAGGTGAGCTGTTGCTTGA......................................................................................................................................................................................................25200.1020020
...............................GCAGAAAGGTGAGCTGTTGCTTGAA.....................................................................................................................................................................................................25200.1022000
........................................................................................................................................................................................TACGACAGCAGATGAGCTCCACAG.............................................24200.1020020
...............................GCAGAAAGGTGAGCTGTTGCTTGAT.....................................................................................................................................................................................................25200.1022000
...............................GCAGAAAGGTGAGCTGTTGCTTG.......................................................................................................................................................................................................23200.1020200
..........................................................................................................................TTGGCCTCTGTGCGCACGGGAGCGCAA........................................................................................................27200.1020020
...............................GCAGAAAGGTGAGCTGTTGCTTGAGC....................................................................................................................................................................................................26200.1022000
...............................GCAGAAAGGTGAGCTGTTGCTTGAGT....................................................................................................................................................................................................26200.1020011
...............................GCAGAAAGGTGAGCTGTTGCTTGT......................................................................................................................................................................................................24200.1021001
...............................GCAGAAAGGTGAGCTGTTGC..........................................................................................................................................................................................................20200.1021010
..............................................................................................................................................................CTATCTTGCAGCGGATTGGAC..........................................................................21200.1022000
...............................GCAGAAAGGTGAGCTGTTGCTTGAGA....................................................................................................................................................................................................26200.1022000
................................CAGAAAGGTGAGCTGTTGCTTGA......................................................................................................................................................................................................23200.1022000
...............................................................................................................................................................TATCTTGCAGCGGATTGGACGAGG......................................................................24200.1022000
...........................................................GAGGGGAAAGCTTCGGAAAGCGTTCCC.......................................................................................................................................................................27100.1010010
........................................................................................................................................................................................TACGACAGCAGATGAGCTCCACAGC............................................25200.1020002
..............................................................................................................................................................CTATCTTGCAGCGGATTGGACGTTT......................................................................25200.1022000
.....AGCCACGTACGTAAAATCCGGAGAAC..............................................................................................................................................................................................................................26110.0911000
..........................................................AGAGGGGAAAGCTTCGGAAAGCGTT..........................................................................................................................................................................25130.0811000
.........................................................TAGAGGGGAAAGCTTCGGAAAGCGT...........................................................................................................................................................................25130.0811000
................TAAAATCCGGAGAACGCAGAAAGG.....................................................................................................................................................................................................................24150.0711000
............TACGTAAAATCCGGAGAACGCAGAAAGG.....................................................................................................................................................................................................................28150.0711000
...................................................TTGAGGTAGAGGGGAAAGA.......................................................................................................................................................................................19200.0511000
...............................................................................................................................................................TATCTTGCAGCGGATTGGAC..........................................................................20200.0511000
........................................................................................................................................................................................TACGACAGCAGATGAGCTCCACAGCTGC.........................................28200.0511000
.................................................................................................CGACCTGGAAGCGGCGCTCAATT.....................................................................................................................................23200.0511000
.................................................................................................CGACCTGGAAGCGGCGCTCAATGACAC.................................................................................................................................27200.0511000
..............................................................................................................................................................CTATCTTGCAGCGGATTGGACGACT......................................................................25200.0511000
...............................................................................................................................CTCTGTGCGCACGGGAGCGCAAA.......................................................................................................23200.0510001
..............................................................................................................................................................CTATCTTGCAGCGGATTGGACGATC......................................................................25200.0510001
.................................................................................................CGACCTGGAAGCGGCGCTCAATGACT..................................................................................................................................26200.0510010
......................................................................................................................TGACTTGGCCTCTGTGCGCAC..................................................................................................................21200.0511000
...............................GCAGAAAGGTGAGCTGTTGCTTGACT....................................................................................................................................................................................................26200.0510100
..........................AGAACGCAGAAAGGTGAGCTGTT............................................................................................................................................................................................................23200.0511000
..........................................AGCTGTTGCTTGAGGTAGAGGGGAAAG........................................................................................................................................................................................27200.0511000
..............................................................................................................................................................CTATCTTGCAGCGGATTGGACGAGA......................................................................25200.0511000
..........................................................................................................................TTGGCCTCTGTGCGCACGGGAGCGCAAA.......................................................................................................28200.0510100
..........................AGAACGCAGAAAGGTGAGCTGTTG...........................................................................................................................................................................................................24200.0511000
.......................................................................................................GGAAGCGGCGCTCAATGACTTGGC..............................................................................................................................24200.0511000
................................................................................................GCGACCTGGAAGCGGCGCTCAATGACT..................................................................................................................................27200.0511000
...............................GCAGAAAGGTGAGCTGTTGCTTGACA....................................................................................................................................................................................................26200.0510010
.................................................................................................CGACCTGGAAGCGGCGCTCAATGACA..................................................................................................................................26200.0511000
.........................................................................................................................................................TAGCTCTATCTTGCAGCGGATTGG............................................................................24200.0510001
...............................GCAGAAAGGTGAGCTGTTGCTTT.......................................................................................................................................................................................................23200.0510010
..............................................GTTGCTTGAGGTAGAGGGGAAG.........................................................................................................................................................................................22200.0510001
...............................GCAGAAAGGTGAGCTGTTGCTTGTT.....................................................................................................................................................................................................25200.0510010
...............................GCAGAAAGGTGAGCTGTTGCT.........................................................................................................................................................................................................21200.0511000
...............................GCAGAAAGGTGAGCTGTTGCTTTC......................................................................................................................................................................................................24200.0510010
......................................................................................AAGTTTAAGAGCGACCTGGAAGCGGC.............................................................................................................................................26200.0511000
..........................................................................................................................TTGGCCTCTGTGCGCACGGGAGCGCAAAA......................................................................................................29200.0510010
..................................................................................................................................................................CTTGCAGCGGATTGGACGAGG......................................................................21200.0511000
.................................................................................................................................................................TCTTGCAGCGGATTGGACGAGG......................................................................22200.0510010
......................................................................TTCGGAAAGCGTTCCCAAGTTTAAGAGC...........................................................................................................................................................28200.0511000
..............................................................................................................................................................CTATCTTGCAGCGGATTGGACGAGTT.....................................................................26200.0511000
......................................................................TTCGGAAAGCGTTCCCAAGTT..................................................................................................................................................................21200.0511000
..............................................................................................................................................................CTATCTTGCAGCGGATTGGACGAAC......................................................................25200.0511000
......................................................................................................................TGACTTGGCCTCTGTGCGCACGGGT..............................................................................................................25200.0510010
.............................................................................................................................................................TCTATCTTGCAGCGGATTGGACGCT.......................................................................25200.0510001
...............................................................................................................................................................TATCTTGCAGCGGATTGGACGAT.......................................................................23200.0511000
.................................................................................................CGACCTGGAAGCGGCGCTCAA.......................................................................................................................................21200.0510010
........................................................................................GTTTAAGAGCGACCTGGAAGCGGCGCT..........................................................................................................................................27200.0510010
.........................................................................................................................................................................................................TCCACAGCTGCATGGTCGCCA...............................21200.0511000
................................CAGAAAGGTGAGCTGTTGCTTGAGG....................................................................................................................................................................................................25200.0511000
.........................GAGAACGCAGAAAGGTGAGCTGTTG...........................................................................................................................................................................................................25200.0511000
......................................................................TTCGGAAAGCGTTCCCAAGTTT.................................................................................................................................................................22200.0511000
.......................................................................................AGTTTAAGAGCGACCTGGAAGCGGCGCT..........................................................................................................................................28200.0510010
.......................................................................TCGGAAAGCGTTCCCAAGTTTAAGAG............................................................................................................................................................26200.0511000
...............................GCAGAAAGGTGAGCTGTTGCTTGC......................................................................................................................................................................................................24200.0511000
....................................................................................................................AATGACTTGGCCTCTGTGCGC....................................................................................................................21200.0510010
..............................................................................................................................................................CTATCTTGCAGCGGATTGGACGAGGCT....................................................................27200.0510001
..............................CGCAGAAAGGTGAGCTGTTGCTTGAGG....................................................................................................................................................................................................27200.0511000
...........................GAACGCAGAAAGGTGAGCTGTTGCTTGT......................................................................................................................................................................................................28200.0510100
...............................................................................................................................................................................................GCAGATGAGCTCCACAGCTG..........................................20200.0510001
.............................................................................................................................................................TCTATCTTGCAGCGGATTGGACGAGG......................................................................26200.0511000
.......................CGGAGAACGCAGAAAGGTGAGCT...............................................................................................................................................................................................................23200.0510010
dm3
TGGGCAGCAACGTACGCAAAATCCGGAGAACACAGCAAGGTGAGCCGTTGCTCGAAGTAGAGGGAAG--------------------------AGAGCGATCTTGAAGCGGCGCTCAAAGATTTGGCCTCTGTGCGCACGGGAGCTCAAAGAAAAGCGCTATCCTGCAGCGGACAGGACCAGGCTTCGACAGCAGAGGAGCTCCACAGCTGCATGGTCGCCCAG-------------------ATCCAGGGGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................TTGGCCTCTGTGCGCACGGGAGC............................................................................................................23719.001330000000000000000000001000000000000000020200000000000100000000000000000000000000000000000000000000000000000000000100100000000000000000030010100000100320125000000000000000000000000000000000010101001500000000000000000018001404061200000000000000000000000000000000000000000000000000000000000000000007220000001474000000000000002626000000
..........................................................................................................................TTGGCCTCTGTGCGCACGGGA..............................................................................................................2188.7570000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003010000110010000000000000000000000000000000000000000000000000000100000000010200112110010000000000000000000000000000000000000000000001003170000000000000000932000000210000000000000001021000000
...........................................................................................................................TGGCCTCTGTGCGCACGGGAGC............................................................................................................2276.57460000000000000000000001100000000000000010001000000000000000000000000000000000000000000200000000000000000000000000000600000000000000000000000033000000000100000000000000000000000000000000000000000000000000001000000000500010001000000000000000000000000000000000000000000000000000000000000002000000123000000131000000000000002301000000
..............................................................................................GAGCGATCTTGAAGCGGCGCT..........................................................................................................................................2144.00160000000000000000000000000000000000000000000000010020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000010000000210000000000000000000000000000000000000000000000000000000000010000000000000001002000000210000000000000000100000000
..........................................................................................................................TTGGCCTCTGTGCGCACGGGAG.............................................................................................................2283.75300000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001010000024000000000000000000000000000000000000000001010000000000000000400020100220000000000000000000000000000000000000000000000010000000000000000000310000000110000000000000000000000000
.............................................................................................................................................................................................CAGCAGAGGAGCTCCACAGCTGCA........................................2442.50100000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000001100000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................TGGCCTCTGTGCGCACGGGAG.............................................................................................................2182.38190000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000001000000000000000000000000000000000000000000000000000000000200000000400000200100000000000000000000000000000000000000000000000000000000000000000001100000000120000000000000000010000000
.............................................................................................................................GCCTCTGTGCGCACGGGAGCT...........................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
............................................................................................................................GGCCTCTGTGCGCACGGGAGC............................................................................................................2171.86130000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000001000000001000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000140000000000000000000000000
...............................................................................................................................................................................................GCAGAGGAGCTCCACAGCTGCATGG.....................................2551.8090000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000010050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................AGAGCGATCTTGAAGCGGCGCT..........................................................................................................................................2241.5060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........................................................................................................................TGGCCTCTGTGCGCACGGGA..............................................................................................................2081.25100000000000000000000000100000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000010000000000001000000010000000002000000000000000000000000
.............................................................................................AGAGCGATCTTGAAGCGGCGC...........................................................................................................................................2141.2550000000000000000000000000000000000000000200010000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...............................................................................................................................................................................................GCAGAGGAGCTCCACAGCTGCATG......................................2451.2060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000310000000000000000000000000
.............................................................................................................................GCCTCTGTGCGCACGGGAGC............................................................................................................2071.1480000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000100000000000000000000000100000000000000000001000000000000000000000000000000000000000000000000000000000100000000011000000000000000000000000
................................................................................................................GCTCAAAGATTTGGCCTCTGTGCGCACG.................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TTGGCCTCTGTGCGCACGGGAGCTA..........................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................GCAGAGGAGCTCCACAGCTGCATGGTCG..................................2841.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004
..................................................................................................................................................................................................GAGGAGCTCCACAGCTGCATGGTCG..................................2571.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000
..........................................................................................................................TTGGCCTCTGTGCGCACGGGAGCT...........................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................TTCGACAGCAGAGGAGCTCCACAGC............................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................GCAGAGGAGCTCCACAGCTGCATGGTC...................................2750.8040000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................CAGCAGAGGAGCTCCACAGCTG..........................................22200.75150000000000000000000000000000000000000000001000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000103000000000600000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
............................................................................................................................GGCCTCTGTGCGCACGGGA..............................................................................................................1980.7560000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000010000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................................................................GAGCGATCTTGAAGCGGCGCTCA........................................................................................................................................2340.7530000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
..................................................................................................................................................................................................GAGGAGCTCCACAGCTGCATGGTCGC.................................2670.7150000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................TTGGCCTCTGTGCGCACGGG...............................................................................................................2080.6350000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..........................................................................................................................TTGGCCTCTGTGCGCACGG................................................................................................................1980.6350000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000001000000000
...............................................................................................................................................................................................GCAGAGGAGCTCCACAGCTGCATGGT....................................2650.6030000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
...............................................................................................AGCGATCTTGAAGCGGCGCT..........................................................................................................................................2050.6030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................AGCGCTATCCTGCAGCGGA................................................................................1950.6030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
..............................................................................................................................................................................................AGCAGAGGAGCTCCACAGCTGCATG......................................2550.6030000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................GGCCTCTGTGCGCACGGGTT.............................................................................................................2080.5040000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................CAGCAGAGGAGCTCCACAGCTGCATG......................................2640.5020000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TACGCAAAATCCGGAGAACAC............................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................AGGAGCTCCACAGCTGCATGG.....................................2180.5040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................................................................................................................................................................................................GAGGAGCTCCACAGCTGCATGGT....................................2380.5040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000002
....................................................................................................................................................................................................GGAGCTCCACAGCTGCATGGTCGC.................................2470.4330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................AGAGGAGCTCCACAGCTGCATGGTCG..................................2670.4330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000
...............................................................................................................................................................................................GCAGAGGAGCTCCACAGCTGCA........................................2250.4020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010000000000000000000000000
................................................................................................................................................................................................CAGAGGAGCTCCACAGCTGCA........................................2150.4020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001000000000000000000000000000000000
...........................................................................................................................TGGCCTCTGTGCGCACGGGAT.............................................................................................................2180.3830000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................GGCCTCTGTGCGCACGGGAG.............................................................................................................2080.3830000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................GAGGAGCTCCACAGCTGCATG......................................2180.3830000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................GAGGAGCTCCACAGCTGCATGG.....................................2280.3830000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........................................................................................................................................................................................CGACAGCAGAGGAGCTCCACAGCTG..........................................25200.3570000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CGTACGCAAAATCCGGAGAAC..............................................................................................................................................................................................................................2160.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................GCAGAGGAGCTCCACAGCTGC.........................................21200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................CTCCACAGCTGCATGGTCGCC................................2170.2920000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TGGCCTCTGTGCGCACGGG...............................................................................................................1980.2520000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TTGGCCTCTGTGCGCACGGGT..............................................................................................................2180.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................AGAGGAGCTCCACAGCTGCAT.......................................2180.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................GACAGCAGAGGAGCTCCACAGCTGCA........................................2640.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TTGGCCTCTGTGCGCACGGGAA.............................................................................................................2280.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001000000000000000000000000000000000000
.............................................................................................AGAGCGATCTTGAAGCGGCG............................................................................................................................................2040.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................................................................................ACAGCAGAGGAGCTCCACAGCTGCAT.......................................2640.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........................................................................................................................TTGGCCTCTGTGCGCACGGGAT.............................................................................................................2280.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................CGACAGCAGAGGAGCTCCACAGCTGCA........................................2740.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TTGGCCTCTGTGCGCACGGGAGT............................................................................................................2380.2520000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........................................................................................................................................................................................GACAGCAGAGGAGCTCCACAGCTGCATGGT....................................3040.2510000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................GAGCGATCTTGAAGCGGC.............................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................................CAGCAGAGGAGCTCCACAGCTGCATGG.....................................2740.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................TGGCCTCTGTGCGCACGGGAGA............................................................................................................2280.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................ACAGCAGAGGAGCTCCACAGCTGCA........................................2540.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...........................................................................................................................TGGCCTCTGTGCGCACGGGAGT............................................................................................................2280.2520000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TTGGCCTCTGTGCGCACGGGAGA............................................................................................................2380.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............................................................................................................................................................................................CAGCAGAGGAGCTCCACAGCTGT.........................................23200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................ACAGCAGAGGAGCTCCACAGCTGCATGG.....................................2840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................CAGAGGAGCTCCACAGCTGCATGGT....................................2550.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................CGATCTTGAAGCGGCGCTCAA.......................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TCTTGAAGCGGCGCTCAA.......................................................................................................................................1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................AGCTCCACAGCTGCATGGTCG..................................21100.2020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................CAGAGGAGCTCCACAGCTGCATGG.....................................2450.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TTTGGCCTCTGTGCGCAC..................................................................................................................1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................CGACAGCAGAGGAGCTCCACAGCTGC.........................................26200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................ACAGCAGAGGAGCTCCACAGCTGC.........................................24200.1530000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................GACAGCAGAGGAGCTCCACAGCTG..........................................24200.1530000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
....................................................................................................................................................................................................GGAGCTCCACAGCTGCATGGTCG..................................2370.1410000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TGGCCTCTGTGCGCACGGGAGCA...........................................................................................................2370.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................GCGCTATCCTGCAGCGGTA...............................................................................1970.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........................................................................................................................TGGCCTCTGTGCGCACGGGAGCATT.........................................................................................................2570.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TTGGCCTCTGTGCGCACGGGAGCAT..........................................................................................................2570.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TTGGCCTCTGTGCGCACGGGAGCATC.........................................................................................................2670.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................GAGGAGCTCCACAGCTGCATGGTCGT.................................2670.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
droEre2
T------------ACGCAAAATACGGAGAACGCAGCAAGGTGAGCTACTGCTGGAAGTAGAGAAAAAAGCCTCGGAAAGCGTTCC-------------------------------------------------------------------------------------------------------------------------ATCTGCCTGGTCACTCAATTCAAAGGCGTCCTGTTAAATCCAGAGGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................GGAAAGCGTTCC-------------------------------------------------------------------------------------------------------------------------ATCTGCCTGGTCA..................................2511.0011000000
droYak3
TCGGCAAACACGTACGCAAAATACGGAGAACTTATCAAGGTGAGCTGCAGCTGGAAGTAGGGGAAGAAGCCTC-----------CTAAGTTTAAGAGCGATCTTGAGGAGACGCTCAAAGAGAAAGCCACGGTGCATACGGGTGCGCAGAGAATTGCGCTATCTTGTAGCGAAATGGACGAGGCTACGACAGCAGAGGAGCTT-----CTGCCTAGTCACCCAATTCCAGGAAGTACGGTTAAATCCTGAGGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droFic1
AAG----------------------------------------------------------------------------AGTTTC-------------------------------------------------------------------------------------------------------------------------GAGGTTCTGGGCGATAA------------------------------SizeHit CountTotal NormTotal
No Reads
droVir3
TCGGTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads

Generated: 05/18/2015 at 07:01 PM