ID:

dsi_24436

Coordinate:

2r:5629098-5629155 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [2r_5628876_5629097_+]; CDS [2r_5628876_5629097_+]; CDS [2r_5629156_5629265_+]; exon [2r_5629156_5629265_+]; intron [2r_5629098_5629155_+]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------################################################## GTTGACGTGGGAGTAATATTTGTCGGACATGGTCTGAAGAACGACTTCAGGTGGGATGCCCTGCTTTATAGAGAACCGACAGACCACTAAACTTTCATGTGATTGCAGGGTCATAAACATCTACGTACCGTCGGAGCAGATAATAGACACGGTGCACC ************************************************((((..((.....(((....)))......))..)))).....................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M053 female body	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries
.................................................................................................................TAAACATCTACGTACCGTCGGAGCAGA..................	27	0	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................CATCTACGTACCGTCGGG.......................	18	1	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................GTCGGAGCAGATAATAGACAC........	21	0	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................TCGGAGCAGATAATAGACACGGTGCA..	26	0	1	1.00	1	0	0	0	1	0	0
..............AATATTTGTCGGACATGGTCTGA.........................................................................................................................	23	0	1	1.00	1	0	1	0	0	0	0
................................................................................................................ATAAACATCTACGTACCGTCGGA.......................	23	0	1	1.00	1	0	1	0	0	0	0
......................TCGGACATGGTCTGAAGAACGACTTTAGGGT.........................................................................................................	31	3	1	1.00	1	0	0	1	0	0	0
..............................................................................................................TCATAAACATCTACGTACCGTCGG........................	24	0	1	1.00	1	0	0	1	0	0	0
.............................TGGTCGGAAGAACGA..................................................................................................................	15	1	15	0.07	1	0	0	0	0	1	0
..TGACGTGGGAGAAATT............................................................................................................................................	16	2	20	0.05	1	0	0	0	1	0	0
............................................................................................................................GTATCGTCGAAGCAGA..................	16	2	20	0.05	1	0	0	0	0	0	1

Anti-sense strand reads

CAACTGCACCCTCATTATAAACAGCCTGTACCAGACTTCTTGCTGAAGTCCACCCTACGGGACGAAATATCTCTTGGCTGTCTGGTGATTTGAAAGTACACTAACGTCCCAGTATTTGTAGATGCATGGCAGCCTCGTCTATTATCTGTGCCACGTGG ************************************************((((..((.....(((....)))......))..)))).....................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	M024 male body	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries
..................................................................................................................TTTGTAGATGCATGGCAGCCT.......................	21	0	1	1.00	1	1	0	0	0	0	0
............................................................................................................................CATGGCAGACTCGTCTATTAT.............	21	1	1	1.00	1	0	1	0	0	0	0
.......................................................................TCTTGGTTGACTGGTGAT.....................................................................	18	2	9	0.11	1	0	0	1	0	0	0
....................ACACCCTGTACCAGCCT.........................................................................................................................	17	2	17	0.06	1	0	0	0	1	0	0
.......................................................................TCGTGGCAGTCTAGTGAT.....................................................................	18	3	20	0.05	1	0	0	0	0	1	0
......................................................................CTCTTGGCTGGCAGGT........................................................................	16	2	20	0.05	1	0	0	0	0	0	1

Generated: 04/23/2015 at 08:08 PM